EY728351 | Citrus Genome Database

Overview


Name	EY728351
Unique Name	EY728351
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	811

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_ANASP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Anabaena sp. (strain PCC 7120) GN=clpX PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 2.031e-14
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PF + DAT LT+AGYVGED E++L +LL  AD  VE  QR
Sbjct:  161 PFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQR 200

HSP 2 Score: 47.7506 bits (112), Expect = 2.031e-14
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 3

Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            ENP   R VSGEG+   LLKML+ T  NVPP   G RK P  + I I+T ++ F+
Sbjct:  216 ENPSITRDVSGEGVQQALLKMLEGTVANVPP--QGGRKHPYQDCIQIDTSNILFI 268

[Close]

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_CYAA5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Cyanothece sp. (strain ATCC 51142) GN=clpX PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 2.032e-14
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PF + DAT LT+AGYVGED E++L +LL  AD  VE  QR
Sbjct:  151 PFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQR 190

HSP 2 Score: 47.7506 bits (112), Expect = 2.032e-14
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 3

Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            ENP   R VSGEG+   LLKML+ T  NVPP   G RK P  + I I+T ++ F+
Sbjct:  206 ENPSITRDVSGEGVQQALLKMLEGTVANVPP--QGGRKHPYQDCIQIDTSNILFI 258

[Close]

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_STRA5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Streptococcus agalactiae serotype V GN=clpX PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 2.036e-14
Identity = 24/40 (60.00%), Postives = 33/40 (82.50%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PF I DAT+LT+AGYVGED E++L +L+ AAD++VE  +R
Sbjct:  137 PFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 176

HSP 2 Score: 45.4394 bits (106), Expect = 2.036e-14
Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 3

Query:  174 GENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            GEN    R VSGEG+   LLK+++ T  +VPP   G RK P  E I I TK++ F+
Sbjct:  191 GENVSITRDVSGEGVQQALLKIIEGTVASVPP--QGGRKHPNQEMIQINTKNILFI 244

[Close]

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_STRA3 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Streptococcus agalactiae serotype III GN=clpX PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 2.036e-14
Identity = 24/40 (60.00%), Postives = 33/40 (82.50%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PF I DAT+LT+AGYVGED E++L +L+ AAD++VE  +R
Sbjct:  137 PFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 176

HSP 2 Score: 45.4394 bits (106), Expect = 2.036e-14
Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 3

Query:  174 GENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            GEN    R VSGEG+   LLK+++ T  +VPP   G RK P  E I I TK++ F+
Sbjct:  191 GENVSITRDVSGEGVQQALLKIIEGTVASVPP--QGGRKHPNQEMIQINTKNILFI 244

[Close]

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_STRA1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Streptococcus agalactiae serotype Ia GN=clpX PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 2.036e-14
Identity = 24/40 (60.00%), Postives = 33/40 (82.50%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PF I DAT+LT+AGYVGED E++L +L+ AAD++VE  +R
Sbjct:  137 PFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 176

HSP 2 Score: 45.4394 bits (106), Expect = 2.036e-14
Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 3

Query:  174 GENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            GEN    R VSGEG+   LLK+++ T  +VPP   G RK P  E I I TK++ F+
Sbjct:  191 GENVSITRDVSGEGVQQALLKIIEGTVASVPP--QGGRKHPNQEMIQINTKNILFI 244

[Close]

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_RHOBA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodopirellula baltica GN=clpX PE=3 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 2.635e-14
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PF I DAT LT+AGYVGED E+LL +LL AADF VE  QR
Sbjct:  189 PFAIGDATTLTEAGYVGEDVENLLLKLLHAADFDVEAAQR 228

HSP 2 Score: 43.1282 bits (100), Expect = 2.635e-14
Identity = 23/49 (46.94%), Postives = 31/49 (63.27%), Query Frame = 3

Query:  195 RKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            R VSGEG+   LLKML+ T  NVPP   G RK P  + I ++T ++ F+
Sbjct:  250 RDVSGEGVQQSLLKMLEGTVANVPP--QGGRKHPEQQYIQLDTSNILFI 296

[Close]

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_PROMT (ATP-dependent Clp protease ATP-binding subunit clpX OS=Prochlorococcus marinus (strain NATL2A) GN=clpX PE=3 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 2.637e-14
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PF + DAT LT+AGYVGED E++L +LL  AD  V+  QR
Sbjct:  161 PFAVADATTLTEAGYVGEDVENILLRLLQKADMDVDLAQR 200

HSP 2 Score: 48.9062 bits (115), Expect = 2.637e-14
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 3

Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            ENP   R VSGEG+   LLKML+ T  NVPP   G RK P  ++I I+T  + F+
Sbjct:  216 ENPSITRDVSGEGVQQALLKMLEGTVANVPP--QGGRKHPYGDSIQIDTSQILFI 268

[Close]

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_PROM1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Prochlorococcus marinus (strain NATL1A) GN=clpX PE=3 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 2.637e-14
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PF + DAT LT+AGYVGED E++L +LL  AD  V+  QR
Sbjct:  161 PFAVADATTLTEAGYVGEDVENILLRLLQKADMDVDLAQR 200

HSP 2 Score: 48.9062 bits (115), Expect = 2.637e-14
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 3

Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            ENP   R VSGEG+   LLKML+ T  NVPP   G RK P  ++I I+T  + F+
Sbjct:  216 ENPSITRDVSGEGVQQALLKMLEGTVANVPP--QGGRKHPYGDSIQIDTSQILFI 268

[Close]

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_SYNJB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Synechococcus sp. GN=clpX PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 2.638e-14
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PF + DAT LT+AGYVGED E++L +LL  AD  VE  QR
Sbjct:  162 PFAVADATTLTEAGYVGEDVENILLRLLQVADMDVEEAQR 201

HSP 2 Score: 47.3654 bits (111), Expect = 2.638e-14
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 3

Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            ENP   R VSGEG+   LLKML+ T  NVPP   G RK P  + I I+T ++ F+
Sbjct:  217 ENPSITRDVSGEGVQQALLKMLEGTIANVPP--QGGRKHPYQDCIQIDTSNILFI 269

[Close]

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_SYNJA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Synechococcus sp. (strain JA-3-3Ab) GN=clpX PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 2.638e-14
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PF + DAT LT+AGYVGED E++L +LL  AD  VE  QR
Sbjct:  162 PFAVADATTLTEAGYVGEDVENILLRLLQVADMDVEEAQR 201

HSP 2 Score: 47.3654 bits (111), Expect = 2.638e-14
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 3

Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            ENP   R VSGEG+   LLKML+ T  NVPP   G RK P  + I I+T ++ F+
Sbjct:  217 ENPSITRDVSGEGVQQALLKMLEGTIANVPP--QGGRKHPYQDCIQIDTSNILFI 269

The following BLAST results are available for this feature:

BLAST of EY728351 vs. ExPASy Swiss-Prot

BLAST of EY728351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CLPX_ANASP	2.031e-14	60.00	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_CYAA5	2.032e-14	60.00	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_STRA5	2.036e-14	60.00	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_STRA3	2.036e-14	60.00	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_STRA1	2.036e-14	60.00	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_RHOBA	2.635e-14	70.00	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_PROMT	2.637e-14	57.50	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_PROM1	2.637e-14	57.50	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_SYNJB	2.638e-14	60.00	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_SYNJA	2.638e-14	60.00	ATP-dependent Clp protease ATP-binding subunit clp...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-704-002-F01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY728351 ID=EY728351; Name=EY728351; organism=Citrus sinensis; type=EST; length=811bp
CCACGCGTCCGGCCATTTACCATCACTGATGCAACAGCTTTAACGCAGGC
TGGGTATGTTGGAGAAGACTCGGAATCACTATTGTACCAGTTGTTATCGG
CTGCTGATTTCCACGTGGAAACACCTCAGAGACGGAATCGTCTACATTGA
TTAAGTTGAAAAAAATATTGAAAGGTGAAAATCCAAAAAATGGCAGAAAA
GTTTCGGGCGAAGGAATCTCCACAGGCTTACTCAAAATGCTAAAAAGGAC
TGGCATTAATGTTCCCCCACCTGATAACGGAACTCGGAAACCTCCCCCTT
GGGAAAACATTCCAATTGAAACCAAAGACCTGCCTTTCCTATCGTTGTGG
GGCCCTTCGCTGCTTTCCGACAAGCCGACTCCCACAAACCCCCCGAGCCC
TCTGTCCGCGGTCGGGCGCCTGCTCTCCCCCACATGCCAACGCCTTGTCT
GCGGGTACGCCGGTGGCATCCCCGTTGTGTGTCGCTGGATAGGGCAGGCG
TTCGGGTGTTGATGTGCCTGGTCCGGGGGCGCGCGCACGGCCCCTCTACG
TCGCAACGTCCTCTTGTGACTGGCGTCTGCACGCAGTGATTCGTAGTCAT
CCGCAAAGGTGGGGTTTGGGCTTCGGGGCGTGCGGGCACGAGGAGGTGGT
AGCTGTCCCCGGGGTTATCCGGTGTGTGGCGCCCATACGGTCTTCTCCCC
CGGAGCCGATGTGTGTGGCTGAGGATTATCTACTTCTCCGTGTCCCGACC
GCCGGCGTGTACTTGATCTGAGTCGGCGGATGCCACCCCAGGTCTCTCCG
CGCTCCAGGCA