EY728351

Overview
NameEY728351
Unique NameEY728351
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_VIBPA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Vibrio parahaemolyticus GN=clpX PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 3.797e-12
Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PFT+ DAT LT+AGYVGED E+++ +LL   D+ V   +R
Sbjct:  141 PFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAER 180

HSP 2 Score: 43.8986 bits (102), Expect = 3.797e-12
Identity = 23/55 (41.82%), Postives = 33/55 (60.00%), Query Frame = 3 
Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            ENP   R VSGEG+   LLK+++ T  +VPP   G RK P  E + ++T  + F+
Sbjct:  196 ENPSITRDVSGEGVQQALLKLIEGTVASVPP--QGGRKHPQQEFLQVDTSKILFI 248
[Close]
BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_VIBHB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=clpX PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 3.797e-12
Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PFT+ DAT LT+AGYVGED E+++ +LL   D+ V   +R
Sbjct:  141 PFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAER 180

HSP 2 Score: 43.8986 bits (102), Expect = 3.797e-12
Identity = 23/55 (41.82%), Postives = 33/55 (60.00%), Query Frame = 3 
Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            ENP   R VSGEG+   LLK+++ T  +VPP   G RK P  E + ++T  + F+
Sbjct:  196 ENPSITRDVSGEGVQQALLKLIEGTVASVPP--QGGRKHPQQEFLQVDTSKILFI 248
[Close]
BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_VIBCM (ATP-dependent Clp protease ATP-binding subunit clpX OS=Vibrio cholerae serotype O1 (strain M66-2) GN=clpX PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 3.797e-12
Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PFT+ DAT LT+AGYVGED E+++ +LL   D+ V   +R
Sbjct:  141 PFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAER 180

HSP 2 Score: 43.8986 bits (102), Expect = 3.797e-12
Identity = 23/55 (41.82%), Postives = 33/55 (60.00%), Query Frame = 3 
Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            ENP   R VSGEG+   LLK+++ T  +VPP   G RK P  E + ++T  + F+
Sbjct:  196 ENPSITRDVSGEGVQQALLKLIEGTVASVPP--QGGRKHPQQEFLQVDTSKILFI 248
[Close]
BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_VIBCH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Vibrio cholerae GN=clpX PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 3.797e-12
Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PFT+ DAT LT+AGYVGED E+++ +LL   D+ V   +R
Sbjct:  141 PFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAER 180

HSP 2 Score: 43.8986 bits (102), Expect = 3.797e-12
Identity = 23/55 (41.82%), Postives = 33/55 (60.00%), Query Frame = 3 
Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            ENP   R VSGEG+   LLK+++ T  +VPP   G RK P  E + ++T  + F+
Sbjct:  196 ENPSITRDVSGEGVQQALLKLIEGTVASVPP--QGGRKHPQQEFLQVDTSKILFI 248
[Close]
BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_VIBC3 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=clpX PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 3.797e-12
Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PFT+ DAT LT+AGYVGED E+++ +LL   D+ V   +R
Sbjct:  141 PFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAER 180

HSP 2 Score: 43.8986 bits (102), Expect = 3.797e-12
Identity = 23/55 (41.82%), Postives = 33/55 (60.00%), Query Frame = 3 
Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            ENP   R VSGEG+   LLK+++ T  +VPP   G RK P  E + ++T  + F+
Sbjct:  196 ENPSITRDVSGEGVQQALLKLIEGTVASVPP--QGGRKHPQQEFLQVDTSKILFI 248
[Close]
BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_SALTY (ATP-dependent Clp protease ATP-binding subunit clpX OS=Salmonella typhimurium GN=clpX PE=3 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 3.798e-12
Identity = 22/40 (55.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PFT+ DAT LT+AGYVGED E+++ +LL   D+ V+  QR
Sbjct:  139 PFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178

HSP 2 Score: 41.5874 bits (96), Expect = 3.798e-12
Identity = 22/55 (40.00%), Postives = 32/55 (58.18%), Query Frame = 3 
Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            +NP   R VSGEG+   LLK+++ T   VPP   G RK P  E + ++T  + F+
Sbjct:  194 DNPSITRDVSGEGVQQALLKLIEGTVAAVPP--QGGRKHPQQEFLQVDTSKILFI 246
[Close]
BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_SALTI (ATP-dependent Clp protease ATP-binding subunit clpX OS=Salmonella typhi GN=clpX PE=3 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 3.798e-12
Identity = 22/40 (55.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PFT+ DAT LT+AGYVGED E+++ +LL   D+ V+  QR
Sbjct:  139 PFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178

HSP 2 Score: 41.5874 bits (96), Expect = 3.798e-12
Identity = 22/55 (40.00%), Postives = 32/55 (58.18%), Query Frame = 3 
Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            +NP   R VSGEG+   LLK+++ T   VPP   G RK P  E + ++T  + F+
Sbjct:  194 DNPSITRDVSGEGVQQALLKLIEGTVAAVPP--QGGRKHPQQEFLQVDTSKILFI 246
[Close]
BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_SALSV (ATP-dependent Clp protease ATP-binding subunit clpX OS=Salmonella schwarzengrund (strain CVM19633) GN=clpX PE=3 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 3.798e-12
Identity = 22/40 (55.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PFT+ DAT LT+AGYVGED E+++ +LL   D+ V+  QR
Sbjct:  139 PFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178

HSP 2 Score: 41.5874 bits (96), Expect = 3.798e-12
Identity = 22/55 (40.00%), Postives = 32/55 (58.18%), Query Frame = 3 
Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            +NP   R VSGEG+   LLK+++ T   VPP   G RK P  E + ++T  + F+
Sbjct:  194 DNPSITRDVSGEGVQQALLKLIEGTVAAVPP--QGGRKHPQQEFLQVDTSKILFI 246
[Close]
BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_SALPK (ATP-dependent Clp protease ATP-binding subunit clpX OS=Salmonella paratyphi A (strain AKU_12601) GN=clpX PE=3 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 3.798e-12
Identity = 22/40 (55.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PFT+ DAT LT+AGYVGED E+++ +LL   D+ V+  QR
Sbjct:  139 PFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178

HSP 2 Score: 41.5874 bits (96), Expect = 3.798e-12
Identity = 22/55 (40.00%), Postives = 32/55 (58.18%), Query Frame = 3 
Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            +NP   R VSGEG+   LLK+++ T   VPP   G RK P  E + ++T  + F+
Sbjct:  194 DNPSITRDVSGEGVQQALLKLIEGTVAAVPP--QGGRKHPQQEFLQVDTSKILFI 246
[Close]
BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_SALPC (ATP-dependent Clp protease ATP-binding subunit clpX OS=Salmonella paratyphi C (strain RKS4594) GN=clpX PE=3 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 3.798e-12
Identity = 22/40 (55.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PFT+ DAT LT+AGYVGED E+++ +LL   D+ V+  QR
Sbjct:  139 PFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178

HSP 2 Score: 41.5874 bits (96), Expect = 3.798e-12
Identity = 22/55 (40.00%), Postives = 32/55 (58.18%), Query Frame = 3 
Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            +NP   R VSGEG+   LLK+++ T   VPP   G RK P  E + ++T  + F+
Sbjct:  194 DNPSITRDVSGEGVQQALLKLIEGTVAAVPP--QGGRKHPQQEFLQVDTSKILFI 246
The following BLAST results are available for this feature:
BLAST of EY728351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_VIBPA3.797e-1252.50ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_VIBHB3.797e-1252.50ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_VIBCM3.797e-1252.50ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_VIBCH3.797e-1252.50ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_VIBC33.797e-1252.50ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SALTY3.798e-1255.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SALTI3.798e-1255.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SALSV3.798e-1255.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SALPK3.798e-1255.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SALPC3.798e-1255.00ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-F01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728351 ID=EY728351; Name=EY728351; organism=Citrus sinensis; type=EST; length=811bp
CCACGCGTCCGGCCATTTACCATCACTGATGCAACAGCTTTAACGCAGGC
TGGGTATGTTGGAGAAGACTCGGAATCACTATTGTACCAGTTGTTATCGG
CTGCTGATTTCCACGTGGAAACACCTCAGAGACGGAATCGTCTACATTGA
TTAAGTTGAAAAAAATATTGAAAGGTGAAAATCCAAAAAATGGCAGAAAA
GTTTCGGGCGAAGGAATCTCCACAGGCTTACTCAAAATGCTAAAAAGGAC
TGGCATTAATGTTCCCCCACCTGATAACGGAACTCGGAAACCTCCCCCTT
GGGAAAACATTCCAATTGAAACCAAAGACCTGCCTTTCCTATCGTTGTGG
GGCCCTTCGCTGCTTTCCGACAAGCCGACTCCCACAAACCCCCCGAGCCC
TCTGTCCGCGGTCGGGCGCCTGCTCTCCCCCACATGCCAACGCCTTGTCT
GCGGGTACGCCGGTGGCATCCCCGTTGTGTGTCGCTGGATAGGGCAGGCG
TTCGGGTGTTGATGTGCCTGGTCCGGGGGCGCGCGCACGGCCCCTCTACG
TCGCAACGTCCTCTTGTGACTGGCGTCTGCACGCAGTGATTCGTAGTCAT
CCGCAAAGGTGGGGTTTGGGCTTCGGGGCGTGCGGGCACGAGGAGGTGGT
AGCTGTCCCCGGGGTTATCCGGTGTGTGGCGCCCATACGGTCTTCTCCCC
CGGAGCCGATGTGTGTGGCTGAGGATTATCTACTTCTCCGTGTCCCGACC
GCCGGCGTGTACTTGATCTGAGTCGGCGGATGCCACCCCAGGTCTCTCCG
CGCTCCAGGCA
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