EY728351 | Citrus Genome Database

Overview


Name	EY728351
Unique Name	EY728351
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	811

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_CYAP8 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Cyanothece sp. (strain PCC 8801) GN=clpX PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 2.638e-14
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PF + DAT LT+AGYVGED E++L +LL  AD  VE  QR
Sbjct:  163 PFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQR 202

HSP 2 Score: 47.3654 bits (111), Expect = 2.638e-14
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 3

Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            ENP   R VSGEG+   LLKML+ T  NVPP   G RK P  + I I+T ++ F+
Sbjct:  218 ENPSITRDVSGEGVQQALLKMLEGTIANVPP--QGGRKHPYQDCIQIDTSNILFI 270

[Close]

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_ANAVT (ATP-dependent Clp protease ATP-binding subunit clpX OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=clpX PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 2.638e-14
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PF + DAT LT+AGYVGED E++L +LL  AD  VE  QR
Sbjct:  162 PFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQR 201

HSP 2 Score: 47.3654 bits (111), Expect = 2.638e-14
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 3

Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            ENP   R VSGEG+   LLKML+ T  NVPP   G RK P  + I I+T ++ F+
Sbjct:  217 ENPSITRDVSGEGVQQALLKMLEGTIANVPP--QGGRKHPYQDCIQIDTSNILFI 269

[Close]

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_ACAM1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acaryochloris marina (strain MBIC 11017) GN=clpX PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 2.638e-14
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PF + DAT LT+AGYVGED E++L +LL  AD  VE  QR
Sbjct:  161 PFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQR 200

HSP 2 Score: 47.3654 bits (111), Expect = 2.638e-14
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 3

Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            ENP   R VSGEG+   LLKML+ T  NVPP   G RK P  + I I+T ++ F+
Sbjct:  216 ENPSITRDVSGEGVQQALLKMLEGTVANVPP--QGGRKHPYQDCIQIDTTNILFI 268

[Close]

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_SALTO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=clpX PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 2.641e-14
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVE 120
            PF I DATALT+AGYVGED E++L +L+ AAD+ ++
Sbjct:  140 PFAIADATALTEAGYVGEDVENILLKLIQAADYDIK 175

HSP 2 Score: 48.521 bits (114), Expect = 2.641e-14
Identity = 28/55 (50.91%), Postives = 34/55 (61.82%), Query Frame = 3

Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            ENP   R VSGEG+   LLKML+ T  NVPP   G RK P  E I I+T ++ F+
Sbjct:  195 ENPSITRDVSGEGVQQALLKMLEGTVANVPP--QGGRKHPHQEFIQIDTTNVLFI 247

[Close]

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_SALAI (ATP-dependent Clp protease ATP-binding subunit clpX OS=Salinispora arenicola (strain CNS-205) GN=clpX PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 2.641e-14
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVE 120
            PF I DATALT+AGYVGED E++L +L+ AAD+ ++
Sbjct:  140 PFAIADATALTEAGYVGEDVENILLKLIQAADYDIK 175

HSP 2 Score: 48.521 bits (114), Expect = 2.641e-14
Identity = 28/55 (50.91%), Postives = 34/55 (61.82%), Query Frame = 3

Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            ENP   R VSGEG+   LLKML+ T  NVPP   G RK P  E I I+T ++ F+
Sbjct:  195 ENPSITRDVSGEGVQQALLKMLEGTVANVPP--QGGRKHPHQEFIQIDTTNVLFI 247

[Close]

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_PHEZH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Phenylobacterium zucineum (strain HLK1) GN=clpX PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 2.643e-14
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PFT+ DAT LT+AGYVGED E+++ +LL AAD++VE  QR
Sbjct:  138 PFTVADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177

HSP 2 Score: 42.743 bits (99), Expect = 2.643e-14
Identity = 22/55 (40.00%), Postives = 34/55 (61.82%), Query Frame = 3

Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            +NP   R VSGEG+   LLK+++ T  +VPP   G RK P  E + ++T ++ F+
Sbjct:  193 DNPSITRDVSGEGVQQALLKIMEGTVASVPP--QGGRKHPQQEFLQVDTTNILFI 245

[Close]

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_CLOD6 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium difficile (strain 630) GN=clpX PE=3 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 2.643e-14
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PF + DAT+LT+AGYVGED E++L +L+ AADF +E  +R
Sbjct:  136 PFAMADATSLTEAGYVGEDVENILLKLIQAADFDIEKAER 175

HSP 2 Score: 46.2098 bits (108), Expect = 2.643e-14
Identity = 26/55 (47.27%), Postives = 34/55 (61.82%), Query Frame = 3

Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            ENP   R VSGEG+   LLK+L+ T  NVPP   G RK P  E + I+T ++ F+
Sbjct:  191 ENPSITRDVSGEGVQQALLKILEGTVANVPP--QGGRKHPHQEFLKIDTTNVLFI 243

[Close]

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_STRZP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Streptococcus pneumoniae (strain P1031) GN=clpX PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 2.644e-14
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PF I DATALT+AGYVGED E++L +LL  ADF++E  +R
Sbjct:  139 PFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAER 178

HSP 2 Score: 43.8986 bits (102), Expect = 2.644e-14
Identity = 24/55 (43.64%), Postives = 34/55 (61.82%), Query Frame = 3

Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            EN    R VSGEG+   LLK+++ T  +VPP   G RK P  E I ++TK++ F+
Sbjct:  194 ENVSITRDVSGEGVQQALLKIIEGTVASVPP--QGGRKHPQQEMIQVDTKNILFI 246

[Close]

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_STRZJ (ATP-dependent Clp protease ATP-binding subunit clpX OS=Streptococcus pneumoniae (strain JJA) GN=clpX PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 2.644e-14
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PF I DATALT+AGYVGED E++L +LL  ADF++E  +R
Sbjct:  139 PFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAER 178

HSP 2 Score: 43.8986 bits (102), Expect = 2.644e-14
Identity = 24/55 (43.64%), Postives = 34/55 (61.82%), Query Frame = 3

Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            EN    R VSGEG+   LLK+++ T  +VPP   G RK P  E I ++TK++ F+
Sbjct:  194 ENVSITRDVSGEGVQQALLKIIEGTVASVPP--QGGRKHPQQEMIQVDTKNILFI 246

[Close]

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_STRR6 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=clpX PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 2.644e-14
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PF I DATALT+AGYVGED E++L +LL  ADF++E  +R
Sbjct:  139 PFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAER 178

HSP 2 Score: 43.8986 bits (102), Expect = 2.644e-14
Identity = 24/55 (43.64%), Postives = 34/55 (61.82%), Query Frame = 3

Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            EN    R VSGEG+   LLK+++ T  +VPP   G RK P  E I ++TK++ F+
Sbjct:  194 ENVSITRDVSGEGVQQALLKIIEGTVASVPP--QGGRKHPQQEMIQVDTKNILFI 246

The following BLAST results are available for this feature:

BLAST of EY728351 vs. ExPASy Swiss-Prot

BLAST of EY728351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CLPX_CYAP8	2.638e-14	60.00	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_ANAVT	2.638e-14	60.00	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_ACAM1	2.638e-14	60.00	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_SALTO	2.641e-14	61.11	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_SALAI	2.641e-14	61.11	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_PHEZH	2.643e-14	62.50	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_CLOD6	2.643e-14	57.50	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_STRZP	2.644e-14	62.50	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_STRZJ	2.644e-14	62.50	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_STRR6	2.644e-14	62.50	ATP-dependent Clp protease ATP-binding subunit clp...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-704-002-F01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY728351 ID=EY728351; Name=EY728351; organism=Citrus sinensis; type=EST; length=811bp
CCACGCGTCCGGCCATTTACCATCACTGATGCAACAGCTTTAACGCAGGC
TGGGTATGTTGGAGAAGACTCGGAATCACTATTGTACCAGTTGTTATCGG
CTGCTGATTTCCACGTGGAAACACCTCAGAGACGGAATCGTCTACATTGA
TTAAGTTGAAAAAAATATTGAAAGGTGAAAATCCAAAAAATGGCAGAAAA
GTTTCGGGCGAAGGAATCTCCACAGGCTTACTCAAAATGCTAAAAAGGAC
TGGCATTAATGTTCCCCCACCTGATAACGGAACTCGGAAACCTCCCCCTT
GGGAAAACATTCCAATTGAAACCAAAGACCTGCCTTTCCTATCGTTGTGG
GGCCCTTCGCTGCTTTCCGACAAGCCGACTCCCACAAACCCCCCGAGCCC
TCTGTCCGCGGTCGGGCGCCTGCTCTCCCCCACATGCCAACGCCTTGTCT
GCGGGTACGCCGGTGGCATCCCCGTTGTGTGTCGCTGGATAGGGCAGGCG
TTCGGGTGTTGATGTGCCTGGTCCGGGGGCGCGCGCACGGCCCCTCTACG
TCGCAACGTCCTCTTGTGACTGGCGTCTGCACGCAGTGATTCGTAGTCAT
CCGCAAAGGTGGGGTTTGGGCTTCGGGGCGTGCGGGCACGAGGAGGTGGT
AGCTGTCCCCGGGGTTATCCGGTGTGTGGCGCCCATACGGTCTTCTCCCC
CGGAGCCGATGTGTGTGGCTGAGGATTATCTACTTCTCCGTGTCCCGACC
GCCGGCGTGTACTTGATCTGAGTCGGCGGATGCCACCCCAGGTCTCTCCG
CGCTCCAGGCA