EY728351 | Citrus Genome Database

Overview


Name	EY728351
Unique Name	EY728351
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	811

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_RHISN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium sp. (strain NGR234) GN=clpX PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 4.459e-14
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PFT+ DAT LT+AGYVGED E+++ +LL AAD++VE  QR
Sbjct:  141 PFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 180

HSP 2 Score: 42.743 bits (99), Expect = 4.459e-14
Identity = 22/55 (40.00%), Postives = 34/55 (61.82%), Query Frame = 3

Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            +NP   R VSGEG+   LLK+++ T  +VPP   G RK P  E + ++T ++ F+
Sbjct:  196 DNPSITRDVSGEGVQQALLKIMEGTVASVPP--QGGRKHPQQEFLQVDTTNILFI 248

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_RHIME (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium meliloti GN=clpX PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 4.459e-14
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PFT+ DAT LT+AGYVGED E+++ +LL AAD++VE  QR
Sbjct:  141 PFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 180

HSP 2 Score: 42.743 bits (99), Expect = 4.459e-14
Identity = 22/55 (40.00%), Postives = 34/55 (61.82%), Query Frame = 3

Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            +NP   R VSGEG+   LLK+++ T  +VPP   G RK P  E + ++T ++ F+
Sbjct:  196 DNPSITRDVSGEGVQQALLKIMEGTVASVPP--QGGRKHPQQEFLQVDTTNILFI 248

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_RHIEC (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=clpX PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 4.459e-14
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PFT+ DAT LT+AGYVGED E+++ +LL AAD++VE  QR
Sbjct:  141 PFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 180

HSP 2 Score: 42.743 bits (99), Expect = 4.459e-14
Identity = 22/55 (40.00%), Postives = 34/55 (61.82%), Query Frame = 3

Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            +NP   R VSGEG+   LLK+++ T  +VPP   G RK P  E + ++T ++ F+
Sbjct:  196 DNPSITRDVSGEGVQQALLKIMEGTVASVPP--QGGRKHPQQEFLQVDTTNILFI 248

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_RHIE6 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium etli (strain CIAT 652) GN=clpX PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 4.459e-14
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PFT+ DAT LT+AGYVGED E+++ +LL AAD++VE  QR
Sbjct:  141 PFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 180

HSP 2 Score: 42.743 bits (99), Expect = 4.459e-14
Identity = 22/55 (40.00%), Postives = 34/55 (61.82%), Query Frame = 3

Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            +NP   R VSGEG+   LLK+++ T  +VPP   G RK P  E + ++T ++ F+
Sbjct:  196 DNPSITRDVSGEGVQQALLKIMEGTVASVPP--QGGRKHPQQEFLQVDTTNILFI 248

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_OLICO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=clpX PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 4.459e-14
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PFT+ DAT LT+AGYVGED E+++ +LL AAD++VE  QR
Sbjct:  138 PFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177

HSP 2 Score: 42.743 bits (99), Expect = 4.459e-14
Identity = 22/55 (40.00%), Postives = 34/55 (61.82%), Query Frame = 3

Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            +NP   R VSGEG+   LLK+++ T  +VPP   G RK P  E + ++T ++ F+
Sbjct:  193 DNPSITRDVSGEGVQQALLKIMEGTVASVPP--QGGRKHPQQEFLQVDTTNILFI 245

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_OCHA4 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=clpX PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 4.459e-14
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PFT+ DAT LT+AGYVGED E+++ +LL AAD++VE  QR
Sbjct:  140 PFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179

HSP 2 Score: 42.743 bits (99), Expect = 4.459e-14
Identity = 22/55 (40.00%), Postives = 34/55 (61.82%), Query Frame = 3

Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            +NP   R VSGEG+   LLK+++ T  +VPP   G RK P  E + ++T ++ F+
Sbjct:  195 DNPSITRDVSGEGVQQALLKIMEGTVASVPP--QGGRKHPQQEFLQVDTTNILFI 247

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_BRASO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bradyrhizobium sp. (strain ORS278) GN=clpX PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 4.459e-14
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PFT+ DAT LT+AGYVGED E+++ +LL AAD++VE  QR
Sbjct:  138 PFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177

HSP 2 Score: 42.743 bits (99), Expect = 4.459e-14
Identity = 22/55 (40.00%), Postives = 34/55 (61.82%), Query Frame = 3

Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            +NP   R VSGEG+   LLK+++ T  +VPP   G RK P  E + ++T ++ F+
Sbjct:  193 DNPSITRDVSGEGVQQALLKIMEGTVASVPP--QGGRKHPQQEFLQVDTTNILFI 245

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_BRASB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=clpX PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 4.459e-14
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PFT+ DAT LT+AGYVGED E+++ +LL AAD++VE  QR
Sbjct:  138 PFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177

HSP 2 Score: 42.743 bits (99), Expect = 4.459e-14
Identity = 22/55 (40.00%), Postives = 34/55 (61.82%), Query Frame = 3

Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            +NP   R VSGEG+   LLK+++ T  +VPP   G RK P  E + ++T ++ F+
Sbjct:  193 DNPSITRDVSGEGVQQALLKIMEGTVASVPP--QGGRKHPQQEFLQVDTTNILFI 245

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_AGRT5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=clpX PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 4.459e-14
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PFT+ DAT LT+AGYVGED E+++ +LL AAD++VE  QR
Sbjct:  141 PFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 180

HSP 2 Score: 42.743 bits (99), Expect = 4.459e-14
Identity = 22/55 (40.00%), Postives = 34/55 (61.82%), Query Frame = 3

Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            +NP   R VSGEG+   LLK+++ T  +VPP   G RK P  E + ++T ++ F+
Sbjct:  196 DNPSITRDVSGEGVQQALLKIMEGTVASVPP--QGGRKHPQQEFLQVDTTNILFI 248

BLAST of EY728351 vs. ExPASy Swiss-Prot
Match: CLPX_THETN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Thermoanaerobacter tengcongensis GN=clpX PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 4.459e-14
Identity = 22/40 (55.00%), Postives = 31/40 (77.50%), Query Frame = 1

Query:   13 PFTITDATALTQAGYVGEDSESLLYQLLSAADFHVETPQR 132
            PF I DAT LT+AGYVGED E++L +L+ AAD+ +E  ++
Sbjct:  135 PFAIADATTLTEAGYVGEDVENILLRLIQAADYDIERAEK 174

HSP 2 Score: 46.9802 bits (110), Expect = 4.459e-14
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 3

Query:  177 ENPKNGRKVSGEGISTGLLKMLKRTGINVPPPDNGTRKPPPWENIPIETKDLPFL 341
            ENP   R VSGEG+   LLK+L+ T  NVPP   G RK P  E I I+T ++ F+
Sbjct:  190 ENPSITRDVSGEGVQQALLKILEGTIANVPP--QGGRKHPHQEFIQIDTTNILFI 242

The following BLAST results are available for this feature:

BLAST of EY728351 vs. ExPASy Swiss-Prot

BLAST of EY728351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CLPX_RHISN	4.459e-14	62.50	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_RHIME	4.459e-14	62.50	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_RHIEC	4.459e-14	62.50	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_RHIE6	4.459e-14	62.50	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_OLICO	4.459e-14	62.50	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_OCHA4	4.459e-14	62.50	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_BRASO	4.459e-14	62.50	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_BRASB	4.459e-14	62.50	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_AGRT5	4.459e-14	62.50	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_THETN	4.459e-14	55.00	ATP-dependent Clp protease ATP-binding subunit clp...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-704-002-F01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY728351 ID=EY728351; Name=EY728351; organism=Citrus sinensis; type=EST; length=811bp
CCACGCGTCCGGCCATTTACCATCACTGATGCAACAGCTTTAACGCAGGC
TGGGTATGTTGGAGAAGACTCGGAATCACTATTGTACCAGTTGTTATCGG
CTGCTGATTTCCACGTGGAAACACCTCAGAGACGGAATCGTCTACATTGA
TTAAGTTGAAAAAAATATTGAAAGGTGAAAATCCAAAAAATGGCAGAAAA
GTTTCGGGCGAAGGAATCTCCACAGGCTTACTCAAAATGCTAAAAAGGAC
TGGCATTAATGTTCCCCCACCTGATAACGGAACTCGGAAACCTCCCCCTT
GGGAAAACATTCCAATTGAAACCAAAGACCTGCCTTTCCTATCGTTGTGG
GGCCCTTCGCTGCTTTCCGACAAGCCGACTCCCACAAACCCCCCGAGCCC
TCTGTCCGCGGTCGGGCGCCTGCTCTCCCCCACATGCCAACGCCTTGTCT
GCGGGTACGCCGGTGGCATCCCCGTTGTGTGTCGCTGGATAGGGCAGGCG
TTCGGGTGTTGATGTGCCTGGTCCGGGGGCGCGCGCACGGCCCCTCTACG
TCGCAACGTCCTCTTGTGACTGGCGTCTGCACGCAGTGATTCGTAGTCAT
CCGCAAAGGTGGGGTTTGGGCTTCGGGGCGTGCGGGCACGAGGAGGTGGT
AGCTGTCCCCGGGGTTATCCGGTGTGTGGCGCCCATACGGTCTTCTCCCC
CGGAGCCGATGTGTGTGGCTGAGGATTATCTACTTCTCCGTGTCCCGACC
GCCGGCGTGTACTTGATCTGAGTCGGCGGATGCCACCCCAGGTCTCTCCG
CGCTCCAGGCA