EY728340

Overview
NameEY728340
Unique NameEY728340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728340 vs. ExPASy Swiss-Prot
Match: FBK15_ARATH (F-box/kelch-repeat protein At1g26930 OS=Arabidopsis thaliana GN=At1g26930 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.012e-12
Identity = 50/168 (29.76%), Postives = 73/168 (43.45%), Query Frame = 1
Query:   28 SRNQSPLLPGLPDDLAIACLIRVPRVEHCKLRLVCKRWHRLLSGNFYYSLRKNLGIAEEWIYVIKRDREGKISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLXGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHXFGSCVINNCLYVAGGGEWRG 531
            S +   L+PG+  D +++CLIR  R ++C +  V +    L+     Y LR+  G  E W+Y      E    W AFDP  + W  LP +P+          ++  G  L +FG     + S   +  YS  TN W  A  M   R  FGS        +AGG +  G
Sbjct:   65 SSDSGTLIPGMNRDDSLSCLIRCSRADYCSIASVNRSLRSLIRSGEIYRLRRLQGTLEHWVYFSCHLNE----WEAFDPRSKRWMHLPSMPQNECFRYADKESLAVGTDLLVFG----WEVSSYVIYRYSLLTNSWSTAKSMNMPRCLFGSASYGEIAVLAGGCDSSG 224          
BLAST of EY728340 vs. ExPASy Swiss-Prot
Match: FBK74_ARATH (Putative F-box/kelch-repeat protein At3g46050 OS=Arabidopsis thaliana GN=At3g46050 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.252e-11
Identity = 55/173 (31.79%), Postives = 82/173 (47.40%), Query Frame = 1
Query:   22 SRSRNQSP--LLPGLPDDLAIACLIRVPRVEHCKLRLVCKRWHRLLSGNFYYSLRKNLGIAEEWIYV---IKRD--REGKISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLXGCHLYLFGGKDPLKG-SMRRVIFYSARTNKWHRAPDMLRRRHXFGSCVINNCLYVAGG 516
            ++S N  P      LPDD+ + CL RV R  +  L LVCK +  LL     ++ R  +G  E ++YV   + R+   +    W    PI +  Q L PIP    ++      V  G  +Y+ GG   + G S RR+I     ++ W R P+M   R    + VIN+ +YV GG
Sbjct:    7 NKSSNSPPPTSFSSLPDDIVLNCLARVSRFHYPTLSLVCKGFRSLLDSRELHATRSCIGKTESFLYVCLDLHRNCYPDCPPRWFIVSPITK--QKLKPIPSVTCQS---STVVSIGSKIYIIGGF--VDGHSSRRLIVLDCPSHGWRRLPEMRVPRQNAAADVINDKIYVIGG 172          
BLAST of EY728340 vs. ExPASy Swiss-Prot
Match: FBK24_ARATH (Putative F-box/kelch-repeat protein At1g60570 OS=Arabidopsis thaliana GN=At1g60570 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.252e-11
Identity = 51/160 (31.87%), Postives = 73/160 (45.62%), Query Frame = 1
Query:   46 LLPGLPDDLAIACLIRVPRVEHCKLRLVCKRWHRLLSGNFYYSLRKNLGIAEEWIYVIKRDREGKISWHAF---DPIYQLWQPLPPIPKEYSEALGFGCAVLXGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHXFGSCVINNCLYVAGG 516
            L+P LP++L ++ L RV R+ +  L LVCKR+H LL+    Y  R   G  E  +YV  R      S   F   +        L PIP  +S +L     V  G  +Y  GG   + GS   V      +++W  AP M   R    + +I+  +YV GG
Sbjct:   21 LIPSLPEELILSILARVSRLSYRSLSLVCKRFHSLLTSGEIYRFRSLSGYTENCLYVCLRFSHTGRSHRWFMLREKNKSSGYVLAPIPISHSPSLHASSIVAVGSKIYKIGG--VMDGS--SVSILDCWSHRWLEAPSMQMERDRPSANLIDGKIYVTGG 176          
The following BLAST results are available for this feature:
BLAST of EY728340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
FBK15_ARATH1.012e-1229.76F-box/kelch-repeat protein At1g26930 OS=Arabidopsi... [more]
FBK74_ARATH4.252e-1131.79Putative F-box/kelch-repeat protein At3g46050 OS=A... [more]
FBK24_ARATH4.252e-1131.88Putative F-box/kelch-repeat protein At1g60570 OS=A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-E01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728340 ID=EY728340; Name=EY728340; organism=Citrus sinensis; type=EST; length=882bp
CACGCGTCCGCAGCAAGTGGCAGCAGGAGCCGAAACCAATCTCCTTTGCT
TCCAGGACTCCCTGATGATCTTGCTATTGCTTGCCTCATTCGGGTCCCAC
GGGTTGAGCACTGTAAACTCCGTCTGGTATGCAAAAGATGGCACCGTCTT
TTGTCTGGTAACTTCTACTACTCACTCCGGAAGAACCTTGGGATTGCAGA
GGAATGGATATATGTCATTAAGAGAGATCGAGAGGGGAAAATTTCATGGC
ATGCCTTTGACCCCATATACCAGCTCTGGCAGCCACTGCCTCCCATCCCA
AAGGAATATTCTGAAGCCCTTGGGTTTGGTTGTGCTGTTCTTANTGGCTG
TCACTTGTACTTGTTTGGTGGCAAAGACCCTCTAAAAGGTTCAATGAGAC
GAGTTATTTTTTATAGTGCAAGGACTAATAAATGGCACCGTGCCCCAGAC
ATGCTTCGCAGACGACATNTTTTTGGTTCTTGTGTCATAAACAACTGCTT
ATATGTTGCCGGTGGGGGAGAATGGAGGGGTGCATCGGTCCTTAAGATCA
GCTGAAGTTTATGATCCCCAACAGAATAAATGGGTCTTTATTTCAGATAT
AAACACANCAATGGTGCCCTTCATGGAAGTGGTTACCAAGGCAACTGGTT
CTGAAGGGGGTGGGATTTCCACNGCGAGTTCTAGGCGAGGGCTACCCCCG
AAAAAGGACAGGAGGTCCGGGAAACGAATGCTAAGGGGGAGGGTGGAAGG
GACCATGGGGTGAGGTAGGAACATGTCAAGGCTGGGCGTGTTGGGGAGGT
CGAAGGGCGGGGGGAGGAGGAGTGAGCCAGTCAGGGGGGGAGGCTGGTGC
GAATGCGGCGCGGGGGAGCAGGGAAGCGGCGC
back to top