EY728338

Overview
NameEY728338
Unique NameEY728338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728338 vs. ExPASy Swiss-Prot
Match: CIN4_YEAST (GTP-binding protein CIN4 OS=Saccharomyces cerevisiae GN=CIN4 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.837e-17
Identity = 49/137 (35.77%), Postives = 79/137 (57.66%), Query Frame = 3
Query:  147 KEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAXDELHRMLNEDELR---DAVLLVFANKQDLPNAMNAAEITDKLGLH 539
            KE+R L++GLD +GK+TI+ KL   +       +PT+GF + ++  K+++ ++WD+GGQ  +RP W +YF  TQ +I+ +D +   R  E   EL  ++N DE R   +  ++V  NK DL        + DK  LH
Sbjct:   15 KEIRCLILGLDNSGKSTIVNKLLPKDEQNNDGIMPTVGFQIHSLMIKDVTISLWDIGGQRTLRPFWDNYFDKTQAMIWCIDVSLSMRFDETLQELKELINRDENRIGYECAVIVVLNKIDL--------VEDKSELH 143          
BLAST of EY728338 vs. ExPASy Swiss-Prot
Match: ARL10_HUMAN (ADP-ribosylation factor-like protein 10 OS=Homo sapiens GN=ARL10 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.547e-17
Identity = 50/134 (37.31%), Postives = 78/134 (58.21%), Query Frame = 3
Query:  147 KEMRILMVGLDAAGKTTILYKLK-LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAXDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 545
            ++  +L++GLD AGK+T L  L     +   IPT GFN   +  K+    + ++GG   +R  W+ +      L+FVVDS DR R+  A  ELH++L++D   D  ++V ANKQDL  AM+  E+  +LGL ++
Sbjct:   76 EQREVLVLGLDGAGKSTFLRVLSGKPPLEGHIPTWGFNSVRLPTKDFEVDLLEIGGSQNLRFYWKEFVSEVDVLVFVVDSADRLRLPWARQELHKLLDKDP--DLPVVVVANKQDLSEAMSMGELQRELGLQAI 207          
BLAST of EY728338 vs. ExPASy Swiss-Prot
Match: ARL10_MOUSE (ADP-ribosylation factor-like protein 10 OS=Mus musculus GN=Arl10 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.248e-16
Identity = 53/156 (33.97%), Postives = 85/156 (54.49%), Query Frame = 3
Query:  147 KEMRILMVGLDAAGKTTILYKLK-LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAXDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG-LHSLRQRH-WYIQSTCATSGEGLYE 605
            ++  +L++GLD +GK+T L  L     +   +PT GFN   +  KN    + ++G    +R  W+ +      L+F+VDS DR R+  A  EL ++L+ D   D  +++ ANKQDL  AMN  E+  +LG L S  QR  + + ++ A +G G  E
Sbjct:   75 EQREVLVLGLDGSGKSTFLRMLAGKPPVEGHVPTWGFNSVRLPTKNFEVDLLEIGDSQNLRFYWKEFVNEVDVLVFMVDSTDRLRLPWARQELQKLLDRDP--DLPVVIVANKQDLSGAMNMVELQQELGLLASYNQREVFLLAASIAPAGSGFGE 228          
BLAST of EY728338 vs. ExPASy Swiss-Prot
Match: ARLX_DICDI (ADP-ribosylation factor-like protein DDB_G0292332 OS=Dictyostelium discoideum GN=DDB_G0292332 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.540e-16
Identity = 52/141 (36.88%), Postives = 81/141 (57.45%), Query Frame = 3
Query:  108 LSFTK-LFSRLFAKKEMRILMVGLDAAGKTTILYKLK--LGEIVTT---------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF-QNTQGLIFVVDSNDRDRVVEAXDELHRMLNEDELRDAVLLVFANKQDL 491
            +SF K LF  L  KK   ++++G++  GKTT+LY +     E +TT         IPT GFNVE++  + + F +WD+GG++  R  +RHY       +IFV DS+D + + E+  E   + N+  L++   L+ ANKQDL
Sbjct:    5 ISFIKNLFGFLTIKK---VMILGVENVGKTTLLYNIYKFYSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDL 142          
BLAST of EY728338 vs. ExPASy Swiss-Prot
Match: ARL9_HUMAN (ADP-ribosylation factor-like protein 9 OS=Homo sapiens GN=ARL9 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.045e-14
Identity = 47/132 (35.61%), Postives = 73/132 (55.30%), Query Frame = 3
Query:  144 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAXDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 536
            +K  +IL++GLD AGKT++L+ L    +  ++ PT GF+   +  ++      ++GG    R  W  Y      LIFVVDS D  R+ EA   LH+++  + +    L+VFANKQDL  A +  +I + L L
Sbjct:   16 EKNKQILVLGLDGAGKTSVLHSLASNRVQHSVAPTQGFHAVCINTEDSQMEFLEIGGSKPFRSYWEMYLSKGLLLIFVVDSADHSRLPEAKKYLHQLIAANPV--LPLVVFANKQDLEAAYHITDIHEALAL 145          
BLAST of EY728338 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.279e-12
Identity = 36/98 (36.73%), Postives = 57/98 (58.16%), Query Frame = 3
Query:  144 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAXDELHRMLN 437
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++VDS D++R  E+  EL  +L+
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDSFDKERFAESKKELDALLS 115          
BLAST of EY728338 vs. ExPASy Swiss-Prot
Match: SAR1_ENCCU (Small COPII coat GTPase SAR1 OS=Encephalitozoon cuniculi GN=SAR1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.844e-11
Identity = 43/126 (34.13%), Postives = 65/126 (51.59%), Query Frame = 3
Query:  114 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAXDELHRMLNEDELRDAVLLVFANKQDL 491
            F      LF K    IL +G+D AGKTT++ KLK       +PT   +   +E  N+   V D+GG    R  WR YF +  G++F+VD +D +R  E  +    +L+ +  + A ++V  NK DL
Sbjct:   24 FQNFVKSLFGKPSS-ILFLGIDNAGKTTLVNKLKSDSTDVYMPTHHPSTSYIEIGNLKAQVIDLGGHTAARLAWRDYFYDCHGIVFIVDVHDVERFQEVREAYETVLSLE--KRAPVVVLMNKIDL 146          
The following BLAST results are available for this feature:
BLAST of EY728338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
CIN4_YEAST3.837e-1735.77GTP-binding protein CIN4 OS=Saccharomyces cerevisi... [more]
ARL10_HUMAN8.547e-1737.31ADP-ribosylation factor-like protein 10 OS=Homo sa... [more]
ARL10_MOUSE3.248e-1633.97ADP-ribosylation factor-like protein 10 OS=Mus mus... [more]
ARLX_DICDI5.540e-1636.88ADP-ribosylation factor-like protein DDB_G0292332 ... [more]
ARL9_HUMAN1.045e-1435.61ADP-ribosylation factor-like protein 9 OS=Homo sap... [more]
SAR1_TOBAC8.279e-1236.73GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]
SAR1_ENCCU1.844e-1134.13Small COPII coat GTPase SAR1 OS=Encephalitozoon cu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-D11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728338 ID=EY728338; Name=EY728338; organism=Citrus sinensis; type=EST; length=868bp
CCACGCGTCCGCCCACGCGTCCGCTCTTATTTTTATAGAGAGAGAGAGGG
GCAGTAGATCTGCACCAAGGCAAAAACCGCTCTCTTCCTCAGTTGTGAAA
AATGGGGCTGTCTTTCACCAAGCTTTTCAGCAGGCTTTTTGCTAAGAAAG
AGATGAGAATTCTCATGGTAGGTCTCGATGCAGCTGGTAAGACTACTATC
CTGTACAAGCTTAAGCTCGGAGAGATCGTCACCACCATTCCTACCATTGG
ATTTAATGTAGAGACCGTTGAGTATAAGAACATCAGCTTTACTGTCTGGG
ATGTCGGGGGTCAAGACAAGATCCGACCTTTGTGGAGACATTATTTCCAA
AACACCCAAGGACTCATCTTTGTGGTTGACAGTAATGATCGCGACCGTGT
GGTAGAAGCTANGGATGAGTTGCACAGAATGTTGAATGAGGATGAATTGA
GAGATGCTGTGCTGCTTGTATTTGCTAACAAGCAAGATCTTCCAAATGCA
ATGAATGCTGCTGAGATAACTGACAAGCTTGGCCTTCACTCTCTTCGCCA
GCGCCACTGGTATATCCAGAGCACATGTGCCACTTCTGGTGAAGGGCTGT
ATGAAGGACTTGACTGGCTCTCAAACAACATTGCAAACAAGGCATAGACA
ACTAATTTTGAGTTTTGGGTTGCCCGCACTGCTGAAATAAGAGTTAAAAC
ACCTCTCAAGTGTCTTGGCTTCCTCCTGTGATACCTTCGGTGCCGTGTTA
CCGGGTTTGTTGTTTCCCTTGCAACGTTGAAATTGGTTTTGGTACTTCGA
AAAATCGCGAAGGTAACTTTCCCCTGGTGTCCCCACAACAGAAAAAAAAA
AGGGGGGCNNAGACCGAT
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