EY728325

Overview
NameEY728325
Unique NameEY728325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2829 contig Csv1_Contig2829:353..1136. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7424) GN=ispH PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 8.669e-63
Identity = 104/177 (58.76%), Postives = 145/177 (81.92%), Query Frame = 1
Query:   16 LMNQQYASDIIKKLKENGYEYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFAGKYIIXKDMKE 546
            +MN +Y S +I++++ N Y  T G+VT++LAEA+GFCWGVERAV ++YE R+ FP+++IW+T+E++H+PS+N+RL +M+V+ IPV E +K F VV + DVV+LPAFGA+V EM  LNDK   IVDTTCP V+KVW +VEKHKK +YTSIIHGKY HEET+AT+SFAG Y++  +M++
Sbjct:   30 VMNSEYQSSLIQEIRNNNYRLTQGDVTIRLAEAFGFCWGVERAVAMSYETRQHFPNQRIWLTNEVIHNPSVNQRLRDMKVEFIPVIEDQKDFSVVERDDVVILPAFGASVTEMQLLNDKGCTIVDTTCPWVAKVWNSVEKHKKRNYTSIIHGKYKHEETVATSSFAGTYLVVLNMEQ 206          

HSP 2 Score: 25.0238 bits (53), Expect = 8.669e-63
Identity = 15/41 (36.59%), Postives = 20/41 (48.78%), Query Frame = 3
Query:  654 QAEYVCDYILGGELYGSTLTKEASLRNSRNPFKR-VDPDVD 773
            QA+YVC+YIL G        K+  L   +  +    DPD D
Sbjct:  206 QAKYVCNYILNGG------DKQEFLAKFKKAYSEGFDPDTD 240          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_SYNP2 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ispH PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.957e-62
Identity = 110/180 (61.11%), Postives = 141/180 (78.33%), Query Frame = 1
Query:    7 VRELMNQQYASDIIKKLKENGYEYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFAGKYIIXKDMKE 546
            V  +M  +Y S +I+++++N YE T G+VT+ LAEA+GFCWGVERAV +AYE RK FP EKIW+T+EI+H+PS+N RL+EM V  I V +G K F  V  GDVV+LPAFGA V+EM  LND+   IVDTTCP VSKVW +VEKHKK +YTSIIHGKY HEET+AT+SFAG Y++  +++E
Sbjct:   27 VAGMMTSEYQSSLIQEIRDNNYELTRGDVTIYLAEAFGFCWGVERAVAMAYETRKHFPTEKIWVTNEIIHNPSVNNRLKEMNVHFIEVVDGDKDFSGVANGDVVILPAFGATVQEMQLLNDRGCTIVDTTCPWVSKVWNSVEKHKKKNYTSIIHGKYKHEETVATSSFAGTYLVLLNLEE 206          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_SYNPX (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain WH8102) GN=ispH PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.693e-62
Identity = 110/180 (61.11%), Postives = 140/180 (77.78%), Query Frame = 1
Query:    7 VRELMNQQYASDIIKKLKENGYEYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFAGKYIIXKDMKE 546
            V E + Q Y S +I  +++NGY+ + G +TV+LAEA+GFCWGVERAV +AYE RK +P E++WIT+EI+H+PS+N  L EM+V+ IPVE+G K F  V  GDVV+LPAFGA V+EM  LN++   IVDTTCP VSKVWTTVEKHKK   TSIIHGK  HEET+AT+SFAG Y++  DM+E
Sbjct:   27 VAESLEQAYQSGLIGTIRDNGYKLSHGRLTVRLAEAFGFCWGVERAVAMAYETRKHYPAERLWITNEIIHNPSVNDHLREMDVQFIPVEQGVKDFSGVTSGDVVILPAFGATVQEMQLLNERGCHIVDTTCPWVSKVWTTVEKHKKHTITSIIHGKVKHEETLATSSFAGTYLVVLDMEE 206          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_SYNR3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain RCC307) GN=ispH PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 7.242e-62
Identity = 107/176 (60.80%), Postives = 137/176 (77.84%), Query Frame = 1
Query:   19 MNQQYASDIIKKLKENGYEYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFAGKYIIXKDMKE 546
            + Q Y S++I+ ++ENGYE   G VT++LAEA+GFCWGVERAV IAYE R+ +P E+IWIT+EI+H+PS+N  L EM V  IPVEEG K F  V  GDVV+LPAFGA V+EM  LN++   IVDTTCP VSKVW +VE+HKK  +TS+IHGK  HEET+AT+SFAG Y++  D++E
Sbjct:   31 LEQAYQSELIQSIRENGYELREGRVTIRLAEAFGFCWGVERAVAIAYETRRHYPTERIWITNEIIHNPSVNAHLVEMNVLFIPVEEGVKDFSGVESGDVVILPAFGATVQEMQLLNERGCHIVDTTCPWVSKVWNSVERHKKNSFTSVIHGKVKHEETLATSSFAGTYLVVLDLEE 206          

HSP 2 Score: 23.0978 bits (48), Expect = 7.242e-62
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  648 LIQAEYVCDYILG 686
            L +A+ VCDYILG
Sbjct:  204 LEEAQLVCDYILG 216          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_SYNY3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=ispH PE=3 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 7.436e-62
Identity = 110/177 (62.15%), Postives = 142/177 (80.23%), Query Frame = 1
Query:   16 LMNQQYASDIIKKLKENGYEYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFAGKYIIXKDMKE 546
            +MN +Y S +I+++++N Y    G+VT+ LAEA+GFCWGVERAV +AYE R+ FP +++WIT+EI+H+PS+N+RL EMEV  I V  G+K F  V KGDVV+LPAFGA+VEEM  LND+   IVDTTCP VSKVW +VEKHKK ++TSIIHGKY+HEETIAT+SFAG Y+I  +M E
Sbjct:    3 VMNTEYQSHLIQEIRQNNYRLERGDVTILLAEAFGFCWGVERAVAMAYETRQHFPGDRLWITNEIIHNPSVNQRLREMEVNFIDVVNGEKDFSGVAKGDVVILPAFGASVEEMQLLNDRECTIVDTTCPWVSKVWNSVEKHKKKEHTSIIHGKYNHEETIATSSFAGTYLIVLNMAE 179          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_THEEB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispH PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 2.093e-61
Identity = 107/180 (59.44%), Postives = 142/180 (78.89%), Query Frame = 1
Query:    7 VRELMNQQYASDIIKKLKENGYEYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFAGKYIIXKDMKE 546
            V + +  +Y S +I++++ NGY +  G+VT++LAEA+GFCWGVERAV +AYE R  FP E+IWIT+EI+H+PS+N+RL +M V+ IPV  G K F  V  GDVV+LPAFGA+V+EM  LN++   IVDTTCP VSKVW +VEKHKK  +TSIIHGKY+HEETIAT+SFAG Y+I  +++E
Sbjct:   27 VNQQLQGEYQSSLIQQIRANGYRWQQGDVTIRLAEAFGFCWGVERAVALAYETRTHFPTERIWITNEIIHNPSVNERLRQMAVEFIPVVNGVKDFSGVRPGDVVILPAFGASVQEMQLLNERGCTIVDTTCPWVSKVWHSVEKHKKVSFTSIIHGKYNHEETIATSSFAGTYLIVLNLEE 206          

HSP 2 Score: 24.6386 bits (52), Expect = 2.093e-61
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 3
Query:  648 LIQAEYVCDYILGG 689
            L +A YVCDYIL G
Sbjct:  204 LEEARYVCDYILHG 217          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_TRIEI (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Trichodesmium erythraeum (strain IMS101) GN=ispH PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 6.050e-61
Identity = 104/180 (57.78%), Postives = 141/180 (78.33%), Query Frame = 1
Query:    7 VRELMNQQYASDIIKKLKENGYEYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFAGKYIIXKDMKE 546
            V  LM   Y S++I++++EN Y    G VT+KLA+ +GFCWGVER+V +AYE R+ FP+++IWI+ E++H+PS+N+ +++ME+K IPV +G+K F V    DVV+LPAFGA+V+EM  L DKN QIVDTTCP VSKVW ++EKHKK  +TSIIHGKYSH ETIAT+SFA KY+I  +M +
Sbjct:   27 VATLMQSAYKSNLIQQIRENNYTLQRGEVTIKLAKTFGFCWGVERSVAMAYETRQHFPNQQIWISYELIHNPSVNQDMKDMEIKFIPVIDGQKDFSVAGNNDVVILPAFGASVQEMQILKDKNCQIVDTTCPWVSKVWNSIEKHKKKKFTSIIHGKYSHAETIATSSFADKYLIVLNMTQ 206          

HSP 2 Score: 26.1794 bits (56), Expect = 6.050e-61
Identity = 16/45 (35.56%), Postives = 22/45 (48.89%), Query Frame = 3
Query:  648 LIQAEYVCDYILGGELYGSTLTKEASLRNSRNPFKRVDPDVDPAQ 782
            + QA+YVC+YIL G      L K     +     +  DPD+D  Q
Sbjct:  204 MTQAQYVCNYILNGGNRDEFLAKFKQAYS-----EGFDPDLDLEQ 243          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_SYNSC (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9605) GN=ispH PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.051e-61
Identity = 107/180 (59.44%), Postives = 137/180 (76.11%), Query Frame = 1
Query:    7 VRELMNQQYASDIIKKLKENGYEYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFAGKYIIXKDMKE 546
            V E + Q Y S +I  +++NGY    G + V+LAEA+GFCWGVERAV +AYE RK +P E++WIT+EI+H+PS+N  L EM+V+ IPVE+G K F  V  GDVV+LPAFGA V+EM  LN++   IVDTTCP VSKVW TVEKHKK  +TSIIHGK  HEET+AT+SFAG Y++  D++E
Sbjct:   27 VAESLEQAYQSGLIGTIRDNGYRLEHGRLNVRLAEAFGFCWGVERAVAMAYETRKHYPSERLWITNEIIHNPSVNDHLREMDVQFIPVEQGVKDFSGVTSGDVVILPAFGATVQEMQLLNERGCHIVDTTCPWVSKVWNTVEKHKKHTFTSIIHGKVKHEETLATSSFAGTYLVVLDLEE 206          

HSP 2 Score: 22.7126 bits (47), Expect = 6.051e-61
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  648 LIQAEYVCDYILG 686
            L +A+YV DYILG
Sbjct:  204 LEEAQYVADYILG 216          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_SYNS9 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9902) GN=ispH PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.074e-60
Identity = 107/180 (59.44%), Postives = 137/180 (76.11%), Query Frame = 1
Query:    7 VRELMNQQYASDIIKKLKENGYEYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFAGKYIIXKDMKE 546
            V E + Q Y S +I  +++NGY+ T G + V LAEA+GFCWGVERAV +AYE R+ +P E++WIT+EI+H+PS+N  L EM+V  IPVEEG K F  V  GDVV+LPAFGA V+EM  LN++   IVDTTCP VSKVW TVEKHKK  +TS+IHGK  HEET+AT+SFAG Y++  D++E
Sbjct:   27 VAENLEQAYQSGLIGTIRDNGYKLTHGRLNVHLAEAFGFCWGVERAVAMAYETRRHYPSERLWITNEIIHNPSVNDHLREMDVLFIPVEEGVKDFSGVTSGDVVILPAFGATVQEMQLLNERGCHIVDTTCPWVSKVWNTVEKHKKHTFTSVIHGKVKHEETLATSSFAGTYLVVLDLEE 206          
BLAST of EY728325 vs. ExPASy Swiss-Prot
Match: ISPH_PROMS (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain AS9601) GN=ispH PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.080e-60
Identity = 102/178 (57.30%), Postives = 139/178 (78.09%), Query Frame = 1
Query:   13 ELMNQQYASDIIKKLKENGYEYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWITSEILHSPSINKRLEEMEVKIIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNDKNVQIVDTTCP*VSKVWTTVEKHKKGDYTSIIHGKYSHEETIATASFAGKYIIXKDMKE 546
            + + + Y SD+I  +++NG+ YT G + +KLA+A+GFCWGVERAV +AYE R+ +P+E IWIT+EI+H+PS+N  L +M VK I  + G K F +V+ GDVV+LPAFGA V+EM  L++K   I+DTTCP VSKVW TVEKHKK  +TSIIHGK+ HEET+AT+SFAGKY++  D++E
Sbjct:   29 QALEEAYQSDLISSIRDNGFTYTKGRLNIKLAQAFGFCWGVERAVAMAYETRRHYPNENIWITNEIIHNPSVNDHLRKMNVKFISAKNGIKDFSLVSNGDVVILPAFGATVQEMKLLHEKGCHIIDTTCPWVSKVWHTVEKHKKHVFTSIIHGKFKHEETLATSSFAGKYLVVLDLEE 206          
The following BLAST results are available for this feature:
BLAST of EY728325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
ISPH_CYAP78.669e-6358.764-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNP21.957e-6261.114-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNPX5.693e-6261.114-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNR37.242e-6260.804-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNY37.436e-6262.154-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_THEEB2.093e-6159.444-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_TRIEI6.050e-6157.784-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNSC6.051e-6159.444-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNS91.074e-6059.444-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMS4.080e-6057.304-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-C09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728325 ID=EY728325; Name=EY728325; organism=Citrus sinensis; type=EST; length=784bp
CCACGCGTCCGAGAGCTCATGAATCAACAGTACGCAAGTGATATTATAAA
GAAATTGAAGGAGAATGGATACGAGTATACGTGGGGAAATGTTACGGTGA
AGCTGGCCGAAGCATATGGCTTTTGCTGGGGAGTTGAGCGTGCTGTGCAG
ATTGCTTATGAAGCAAGAAAACAGTTTCCCGATGAGAAGATCTGGATTAC
CAGTGAAATCCTTCACAGTCCATCTATCAACAAGCGGTTGGAGGAGATGG
AAGTTAAAATTATACCTGTTGAGGAAGGAAAGAAGCAATTTGATGTGGTA
AATAAGGGTGATGTTGTGGTTTTGCCTGCATTTGGGGCTGCAGTTGAAGA
AATGGTGACTCTGAATGACAAGAATGTACAGATCGTTGATACAACTTGCC
CTTGAGTGTCGAAGGTCTGGACTACTGTTGAGAAGCACAAGAAGGGAGAC
TATACTTCAATTATTCACGGTAAATATTCTCATGAGGAAACTATAGCAAC
TGCATCTTTTGCAGGAAAGTATATCATANTCAAGGATATGAAAGAGGTAT
GTTCGGAAGGTGGATTATATTATATTTTCTGGAGAATCTGTANAAGCATA
TTAGGAGATATTCATTAGAATGTTTTTTTCTTTTCAATTGTTATTATTTA
ATCCAGGCTGAGTACGTGTGTGATTACATTCTGGGGGGTGAACTTTATGG
ATCTACCCTTACAAAAGAAGCCTCCTTGAGGAATTCCAGAAACCCGTTCA
AAAGGGTTGATCCAGATGTTGACCCGGCACAGTT
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