EY728315

Overview
NameEY728315
Unique NameEY728315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length902
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY728315 vs. ExPASy Swiss-Prot
Match: KCS3_ARATH (3-ketoacyl-CoA synthase 3 OS=Arabidopsis thaliana GN=KCS3 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 5.006e-23
Identity = 77/251 (30.68%), Postives = 122/251 (48.61%), Query Frame = 3 
Query:   96 LLLVPIMVAILIEVLRLGPYEILNLWKSLHFDLVQILCS---SFLIIFIATVYFMSKPRHVYLVDYACYKPPVTCRVPFATFMEHSRLILKNNP---KSVEFQMRILERSGLGEETCLPPAIHY-IPPTPTMEAARGEAELVIFSAMDSLLQKTGLKPKDIDILIVNCSLFSPTPSLSAMLINQYKLRSNIKSFNLSGMGCSAGLISIDLARDLLQVHPNSTLSL*ARRSLHRTTTKGMNEP-----CSFR 812
            LL +P    +      + P    N  K+   DL+ +L S   S+LI  I       + ++ Y++DY C+KP     V          +IL+N        +F ++ +  SG+GE+T  P          PT++    E E      ++ +L++  + P +IDIL+VN S+ + TPSLSA +IN YK+R +IK FNL+ MGCSA +ISID+ +++ + + N    +    SL      G N       C FR
Sbjct:   16 LLYIPQQSLLHFHAFLITPLSNSN--KNTIMDLLVMLLSLLVSYLIFKIWKRIDSKRDQNCYILDYQCHKPSDDRMV---NTQFSGDIILRNKHLRLNEYKFLLKAIVSSGIGEQTYAPRLFFEGREQRPTLQDGLSEMEEFYIDTIEKVLKRNKISPSEIDILVVNVSMLNSTPSLSARIINHYKMREDIKVFNLTAMGCSASVISIDIVKNIFKTYKNKLALVVTSESLSPNWYSGNNRSMILANCLFR 261
The following BLAST results are available for this feature:
BLAST of EY728315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
KCS3_ARATH5.006e-2330.683-ketoacyl-CoA synthase 3 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-B10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728315 ID=EY728315; Name=EY728315; organism=Citrus sinensis; type=EST; length=902bp
CCACGCGTCCGCAAATCTTGCCTGATTTCTCCAACTCGGTGAAGCTCAAG
TATGTTAAACTGGGCTACCAATATCTGGTCAATCACATTCTTTATCTCTT
GCTCGTACCTATTATGGTTGCAATTCTCATCGAGGTCCTCCGCTTGGGCC
CCTATGAAATTCTCAACCTTTGGAAATCTCTTCACTTCGATCTTGTCCAA
ATCCTATGCTCATCCTTCCTCATCATATTCATAGCCACCGTTTACTTCAT
GTCCAAGCCAAGGCACGTCTACCTCGTCGACTATGCCTGCTACAAGCCCC
CCGTCACGTGCCGCGTCCCCTTCGCCACATTCATGGAGCACTCGAGGCTG
ATCTTAAAAAACAACCCTAAAAGCGTTGAGTTTCAAATGAGGATACTCGA
AAGATCCGGACTCGGTGAAGAGACCTGCTTGCCTCCGGCCATTCATTACA
TTCCTCCGACTCCAACAATGGAAGCCGCCAGAGGCGAGGCCGAGCTCGTA
ATCTTCTCCGCCATGGATTCTCTGTTACAAAAGACAGGACTTAAACCTAA
AGACATCGATATTCTTATCGTGAATTGCAGCTTGTTCTCGCCGACGCCGT
CGCTATCGGCCATGTTGATTAACCAGTACAAGCTGAGGAGTAACATCAAG
AGCTTCAATCTTTCGGGTATGGGCTGCAGTGCCGGGCTTATATCCATCGA
CTTAGCTCGGGATCTTCTACAAGTGCATCCGAATTCAACGCTGTCGTTGT
GAGCACGGAGATCATTACACCGAACTACTACCAAGGGAATGAACGAGCCA
TGCTCCTTCCGAATTGCTCTTCCGCATTGGGTGGACCNGCGATCCTGTTA
TCGAACCGGAGGCGCAACCCGTCCCGACCCAGTACGGGCTGTTCCGTGGG
TC
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