EY728312

Overview
NameEY728312
Unique NameEY728312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11729 contig Csv1_Contig11729:1..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY728312 vs. ExPASy Swiss-Prot
Match: RS3_FRATT (30S ribosomal protein S3 OS=Francisella tularensis subsp. tularensis GN=rpsC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.008e-11
Identity = 52/170 (30.59%), Postives = 87/170 (51.18%), Query Frame = 1 
Query:  157 ELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKL-RAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 663
            ++ E L ++LA    S +++       +I I   R+  V+G+KG  + +L + V K    P   V++  E+V    + A   AES+  +L   +  RRA    ++  M+SGAKG +++VSG+L  A+ A+S   +DG +    Q     +D A    L   GV+G+KV I
Sbjct:   38 KVREFLHKKLAAAAVSKIQIERPAQNAKITIHTARSGIVIGKKGEDVEKLRAEVHKLMGIP---VQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGIKIMVSGRLGGAEIARSEWARDGRVPL--QTFRADVDYATAEALTTYGVIGVKVWI 202
[Close]
BLAST of EY728312 vs. ExPASy Swiss-Prot
Match: RS3_FRAT1 (30S ribosomal protein S3 OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=rpsC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.008e-11
Identity = 52/170 (30.59%), Postives = 87/170 (51.18%), Query Frame = 1 
Query:  157 ELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKL-RAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 663
            ++ E L ++LA    S +++       +I I   R+  V+G+KG  + +L + V K    P   V++  E+V    + A   AES+  +L   +  RRA    ++  M+SGAKG +++VSG+L  A+ A+S   +DG +    Q     +D A    L   GV+G+KV I
Sbjct:   38 KVREFLHKKLAAAAVSKIQIERPAQNAKITIHTARSGIVIGKKGEDVEKLRAEVHKLMGIP---VQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGIKIMVSGRLGGAEIARSEWARDGRVPL--QTFRADVDYATAEALTTYGVIGVKVWI 202
The following BLAST results are available for this feature:
BLAST of EY728312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RS3_FRATT7.008e-1130.5930S ribosomal protein S3 OS=Francisella tularensis... [more]
RS3_FRAT17.008e-1130.5930S ribosomal protein S3 OS=Francisella tularensis... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-B06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728312 ID=EY728312; Name=EY728312; organism=Citrus sinensis; type=EST; length=866bp
CCACGCGTCCGGGGTTTGCAGAGAGCTAGCTGCGCACACAAGCCACCTCA
TTGAGATCATCAGATCCCTATCTCTGTAATCGAATCAACAGAAAGCAAAA
TGGCAACTCAAATCAGCAAGAAAAGAAAGTTCGTGGCTGATGGCGTGTTT
TTCGCGGAGCTTAACGAGGTACTGACTAGAGAGCTTGCGGAGGACGGTTA
TTCTGGAGTAGAGGTCAGGGTAACTCCCATGCGTACTGAGATCATCATCC
GAGCCACTCGCACTCAGAACGTTCTTGGTGAGAAAGGGAGGAGAATTAGA
GAGCTGACATCAGTGGTGCAGAAAAGGTTCAAATTCCCGGAGAATAGCGT
GGAGCTGTACGCTGAGAAAGTCAACAATAGAGGACTATGTGCCATTGCTC
AAGCCGAGTCTCTTCGCTACAAGCTCCTTGGTGGGCTTGCTGTTCGCAGG
GCTTGCTATGGTGTCTTGAGGTTCATTATGGAAAGTGGAGCCAAGGGATG
TGAGGTCATTGTCAGTGGAAAGTTGAGGGCACAACGTGCAAAATCAATGA
AGTTTAAGGATGGATATATGGTCTCTTCTGGTCAGCCAGTGAATGAATAT
ATTGACTCTGCTGTGAGACATGTTCTTTTGAGACAGGGTGTACTTGGTAT
TAAGGTCAAGATCATGCTTANTTGGGATCCTAATGGAAAGCAAGGTCCTA
CTACCCCTCTACCTGATCTCGTAACAACCACTCACCCCAGGATGAAGAGG
AGTATGTCNAGCCCACATTGGTTGCTACTGATATTGAGGTCCAATCCAAG
TGGCTTAGGGCCGAGTGGGGTATAGTCTCCTCTTCTTTGATATTTATCAA
TGGGTATTGAAGTGGC
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