EY728308

Overview
NameEY728308
Unique NameEY728308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728308 vs. ExPASy Swiss-Prot
Match: ADF8_ORYSJ (Putative actin-depolymerizing factor 8 OS=Oryza sativa subsp. japonica GN=ADF8 PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 3.893e-28
Identity = 66/168 (39.29%), Postives = 98/168 (58.33%), Query Frame = 1
Query:   37 VDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAW*LVNDKGFIFDSSILLFVSITXXXXXXXXXXXXXXXSRSPDTSKVRSKMIYASSKDRFKRELDGIQVXLQATDPTEMGLDVMRSRTN 540
            V +  K  F EL  ++ +R+++FKI+++++++VVEK G P +SY++FTASLPAD    AVYD DFV+D+NC+KSKI FI+W                                      SP  S +R+K IYA  +++F+ ELDG+   +QATDP +M L+V+R R N
Sbjct:   19 VPEKSKSAFWELMRRKVHRYVIFKIDDRREEIVVEKTGAPWESYDDFTASLPAD----AVYDLDFVSDDNCRKSKIFFISW--------------------------------------SPSLSCIRAKTIYAVWRNQFRHELDGVHFEIQATDPDDMDLEVLRGRAN 144          
BLAST of EY728308 vs. ExPASy Swiss-Prot
Match: ACTP_ACACA (Actophorin OS=Acanthamoeba castellanii PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.454e-24
Identity = 61/170 (35.88%), Postives = 91/170 (53.53%), Query Frame = 1
Query:   25 SGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAW*LVNDKGFIFDSSILLFVSITXXXXXXXXXXXXXXXSRSPDTSKVRSKMIYASSKDRFKRELDGIQVXLQATDPTEMGLDVMRSR 534
            SG+AV DDC  KF ELK    +R++ FK+     +VVVE +G P+ +YE+F + LP  +CRYA++D++F  D   Q++KI FI W                                      +PD++ ++SKM+Y S+KD  K++L GIQV +QATD  E+  D +  R
Sbjct:    2 SGIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDYEFQVDGG-QRNKITFILW--------------------------------------APDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSER 132          
BLAST of EY728308 vs. ExPASy Swiss-Prot
Match: COFI_YARLI (Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.609e-21
Identity = 60/173 (34.68%), Postives = 90/173 (52.02%), Query Frame = 1
Query:   25 SGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDF-VTDENCQKSKIIFIAW*LVNDKGFIFDSSILLFVSITXXXXXXXXXXXXXXXSRSPDTSKVRSKMIYASSKDRFKRELDGIQVXLQATDPTEMGLDVMRSRTN 540
            SG+AV+D     F ELK  +   FI++KI + + ++VVE+ G  +DSY+ F   LP ++CRYAVYDF++ ++    ++SK++F  W                                      SPDT+ VRSKMIYASSKD  +R L GI   +Q TD +E+  + +  R +
Sbjct:   14 SGVAVNDSALQAFNELKLGKKVTFIIYKINDAKTEIVVEEEGT-TDSYDTFLGKLPENDCRYAVYDFEYEISSGEGKRSKLVFFTW--------------------------------------SPDTAPVRSKMIYASSKDSLRRALTGISTEIQGTDFSEVAYESVLERVS 147          
BLAST of EY728308 vs. ExPASy Swiss-Prot
Match: COFI_DEBHA (Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.936e-19
Identity = 55/173 (31.79%), Postives = 90/173 (52.02%), Query Frame = 1
Query:   25 SGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDF-VTDENCQKSKIIFIAW*LVNDKGFIFDSSILLFVSITXXXXXXXXXXXXXXXSRSPDTSKVRSKMIYASSKDRFKRELDGIQVXLQATDPTEMGLDVMRSRTN 540
            SG+AV D+    F +LK  + Y+FI+F + +++ ++VVE+    SD Y+ F   LP +EC+YA+YDF++ +     ++SKI+F  W                                      SPDT+ ++SKMIYASSKD  +R L+G+   +Q TD +E+  + +  R +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFIIFALNDQKTEIVVEETSNNSD-YDAFLEKLPENECKYAIYDFEYEIGGGEGKRSKIVFFTW--------------------------------------SPDTAPIKSKMIYASSKDALRRALNGVSSDVQGTDFSEVAYESVLDRVS 137          
BLAST of EY728308 vs. ExPASy Swiss-Prot
Match: COFI_USTMA (Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.634e-19
Identity = 51/173 (29.48%), Postives = 87/173 (50.29%), Query Frame = 1
Query:   22 ASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAW*LVNDKGFIFDSSILLFVSITXXXXXXXXXXXXXXXSRSPDTSKVRSKMIYASSKDRFKRELDGIQVXLQATDPTEMGLDVMRSRTN 540
            +SG+ V  +C  KF ELK  +  ++I++ + +K  ++VV+     S SY++F A LP  ECRYA+YDF++   +  +++KI F +W                                      SPD +K++ KM++ASSKD  ++ L GI   +Q TD +E+  D +  + +
Sbjct:    2 SSGVKVSQECLDKFQELKLGKKIKYIIYSLNDKNTEIVVQNTST-STSYDDFLAELPPTECRYAIYDFEYEKGDAGKRNKICFFSW--------------------------------------SPDDAKIKPKMVFASSKDALRKALVGISTEIQGTDFSEVSYDTVLDKVS 135          
BLAST of EY728308 vs. ExPASy Swiss-Prot
Match: COFI_SCHPO (Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.255e-18
Identity = 54/167 (32.34%), Postives = 84/167 (50.30%), Query Frame = 1
Query:   25 SGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAW*LVNDKGFIFDSSILLFVSITXXXXXXXXXXXXXXXSRSPDTSKVRSKMIYASSKDRFKRELDGIQVXLQATDPTEMGLDVM 525
            SG+ V  +C   F ELK  ++ R++VFK+ + + ++VVEK     D ++ F   LP  +CRYA+YDF+F   E   ++KIIFI+W                                      SPD + ++SKM+Y+SSKD  +R   GI   +QATD +E+  + +
Sbjct:    4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKD-FDTFLGDLPEKDCRYAIYDFEFNLGEGV-RNKIIFISW--------------------------------------SPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYETV 130          
BLAST of EY728308 vs. ExPASy Swiss-Prot
Match: COFI_YEAST (Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.141e-18
Identity = 54/173 (31.21%), Postives = 87/173 (50.29%), Query Frame = 1
Query:   25 SGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDF-VTDENCQKSKIIFIAW*LVNDKGFIFDSSILLFVSITXXXXXXXXXXXXXXXSRSPDTSKVRSKMIYASSKDRFKRELDGIQVXLQATDPTEMGLDVMRSRTN 540
            SG+AV D+    F +LK  + Y+FI+F + + + ++VV++      SY+ F   LP ++C YA+YDF++ +     ++SKI+F  W                                      SPDT+ VRSKM+YASSKD  +R L+G+   +Q TD +E+  D +  R +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETST-DPSYDAFLEKLPENDCLYAIYDFEYEINGNEGKRSKIVFFTW--------------------------------------SPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFSEVSYDSVLERVS 137          
BLAST of EY728308 vs. ExPASy Swiss-Prot
Match: COFI_CANGA (Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.796e-18
Identity = 52/173 (30.06%), Postives = 88/173 (50.87%), Query Frame = 1
Query:   25 SGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDF-VTDENCQKSKIIFIAW*LVNDKGFIFDSSILLFVSITXXXXXXXXXXXXXXXSRSPDTSKVRSKMIYASSKDRFKRELDGIQVXLQATDPTEMGLDVMRSRTN 540
            SG+AV D+    F +LK    Y+F++F + + + ++VV++      SY+ F   LP ++C YAVYDF++ +++   ++SKI+F  W                                      SPDT+ VR KM+YASSKD  KR L+G+ + +Q TD +E+  + +  + +
Sbjct:    4 SGVAVADESIQAFNDLKLGMKYKFVLFSLNDAKTEIVVKETSS-DPSYDAFLEKLPENDCLYAVYDFEYQISESEGKRSKIVFFTW--------------------------------------SPDTASVRPKMVYASSKDALKRALNGVAIEIQGTDFSEVSYEAVLEKVS 137          
BLAST of EY728308 vs. ExPASy Swiss-Prot
Match: COFI_ZYGRO (Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.229e-18
Identity = 53/173 (30.64%), Postives = 86/173 (49.71%), Query Frame = 1
Query:   25 SGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDF-VTDENCQKSKIIFIAW*LVNDKGFIFDSSILLFVSITXXXXXXXXXXXXXXXSRSPDTSKVRSKMIYASSKDRFKRELDGIQVXLQATDPTEMGLDVMRSRTN 540
            SG++V D+    F +LK  + Y+F+++ I E +  +VV++    S SY+ F   LP ++C YA+YDF++ +     ++SKI+F  W                                      SPDT+ VRSKM+YASSKD  +R L G+   +Q TD +E+  + +  R +
Sbjct:    4 SGVSVADESLQAFNDLKLGKKYKFVLYGISEDKTTIVVKETST-SQSYDEFLGKLPENDCLYAIYDFEYEIGGNEGKRSKIVFFTW--------------------------------------SPDTAPVRSKMVYASSKDALRRALTGVSSDIQGTDFSEVSFETVLERVS 137          
BLAST of EY728308 vs. ExPASy Swiss-Prot
Match: COFI_PICAN (Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.062e-17
Identity = 52/166 (31.33%), Postives = 86/166 (51.81%), Query Frame = 1
Query:   25 SGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDF-VTDENCQKSKIIFIAW*LVNDKGFIFDSSILLFVSITXXXXXXXXXXXXXXXSRSPDTSKVRSKMIYASSKDRFKRELDGIQVXLQATDPTEMGLD 519
            SG+AV D+    F +LK  + ++ I++K+ + + ++VV+      D+Y+ F   LP ++CRYAVYDF++ V   + +++KI+F  W                                      SPDT+ VR+KM+YASSKD  +R L+GI   +Q TD +E+  +
Sbjct:    4 SGVAVSDEALKAFNDLKLGKKFKSIIYKLNDAKTEIVVDSTST-EDAYDAFVEDLPENDCRYAVYDFEYEVGQGDGKRNKIVFYQW--------------------------------------SPDTASVRAKMVYASSKDALRRALNGIGTEIQGTDFSEVAYE 130          
The following BLAST results are available for this feature:
BLAST of EY728308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
ADF8_ORYSJ3.893e-2839.29Putative actin-depolymerizing factor 8 OS=Oryza sa... [more]
ACTP_ACACA4.454e-2435.88Actophorin OS=Acanthamoeba castellanii PE=1 SV=2[more]
COFI_YARLI4.609e-2134.68Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1[more]
COFI_DEBHA1.936e-1931.79Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1[more]
COFI_USTMA5.634e-1929.48Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1[more]
COFI_SCHPO1.255e-1832.34Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 ... [more]
COFI_YEAST2.141e-1831.21Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 S... [more]
COFI_CANGA2.796e-1830.06Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1[more]
COFI_ZYGRO6.229e-1830.64Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 S... [more]
COFI_PICAN1.062e-1731.33Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-B02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728308 ID=EY728308; Name=EY728308; organism=Citrus sinensis; type=EST; length=893bp
CCACGCGTCCGGGCAAATGCAGCATCTGGAATGGCAGTCGACGATGACTG
CAAGCTGAAGTTTTTGGAATTGAAGGCAAAAAGGACTTACCGCTTCATAG
TTTTCAAGATTGAAGAGAAGCAGAAGCAGGTTGTTGTGGAGAAGCTTGGT
GAACCATCTGATAGTTATGAGAATTTCACTGCTAGCCTCCCAGCGGATGA
GTGCCGATACGCTGTCTACGATTTTGACTTTGTGACTGATGAGAACTGCC
AGAAGAGCAAGATTATTTTCATTGCATGGTAATTGGTCAATGATAAAGGA
TTTATTTTCGATTCTTCGATCCTTTTGTTTGTTTCCATCACAATTTTGCC
TTAATATTTCATACTAATAAATTTGTTGATTTACATATCAAGGTCCCCCG
ACACCTCAAAGGTGAGAAGCAAGATGATTTATGCTAGCTCCAAGGACAGG
TTCAAGAGAGAATTGGATGGAATTCAGGTANAGTTGCAGGCTACTGATCC
TACTGAGATGGGTCTTGATGTCATGAGAAGCCGCACAAATTANATTTTAG
ACTTGCCTATGGGTGCATGGAAAGCCCATACTATATTGTCCACTTAGATG
TAATGTCTATATCTTTGATGACTTATGACTTGGCTTGCTATCAGCCTGTG
GTCGGGAGTGAATAACTTTTTGAAGTGGCCGCGCCTTTGGTGATATCTGG
GGGTTAATAGGGGGAGGGTCCCCCGTGGTGTGGGTGCGGTGCCGAGCTAG
CATTAATGGTTGGTGGGGGGTCGGTCTCCGCGTTGGCCCGGGTGTCGGGC
GACGGGGGTGGTGGGCGGGGTGGCGGGGTGACCCGGCGGTTGTGCGTGTG
CGGCGGAGGCTCGGAAGAGGGGGGGGGCGGTGGGGGACATCGC
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