EY728308

Overview
NameEY728308
Unique NameEY728308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728308 vs. ExPASy Swiss-Prot
Match: COFI_KLULA (Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.388e-17
Identity = 52/166 (31.33%), Postives = 84/166 (50.60%), Query Frame = 1
Query:   25 SGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDEN-CQKSKIIFIAW*LVNDKGFIFDSSILLFVSITXXXXXXXXXXXXXXXSRSPDTSKVRSKMIYASSKDRFKRELDGIQVXLQATDPTEMGLD 519
            SG+AV D+    F +LK  + Y+FI++ + + + +++V++     D Y+ F   LP ++C YAVYDF++    N  ++SKI+F  W                                      SPDT+ VRSKM+YASSKD  +R L+G+   +Q TD +E+  +
Sbjct:    4 SGVAVADESLNAFNDLKLGKKYKFILYALNDSKTEIIVKETSAEQD-YDKFLEQLPENDCLYAVYDFEYELGNNEGKRSKIVFFTW--------------------------------------SPDTAPVRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYE 130          
BLAST of EY728308 vs. ExPASy Swiss-Prot
Match: COFI_ASHGO (Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.367e-17
Identity = 51/166 (30.72%), Postives = 83/166 (50.00%), Query Frame = 1
Query:   25 SGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDF-VTDENCQKSKIIFIAW*LVNDKGFIFDSSILLFVSITXXXXXXXXXXXXXXXSRSPDTSKVRSKMIYASSKDRFKRELDGIQVXLQATDPTEMGLD 519
            SG+AV D+    F +LK  + Y+F++F +   +  ++V++     D Y+ F   LP D+C YAVYDF++ ++    ++SKI+F  W                                      SPDT+ +RSKM+YASSKD  +R L+G+   +Q TD +E+  +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFVLFGLNADKTSIIVKETSNERD-YDVFLEKLPEDDCLYAVYDFEYEISGAEGKRSKIVFFTW--------------------------------------SPDTAPIRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYE 130          
BLAST of EY728308 vs. ExPASy Swiss-Prot
Match: COFI_CRYNE (Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.995e-17
Identity = 52/169 (30.77%), Postives = 84/169 (49.70%), Query Frame = 1
Query:   22 ASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDF-VTDENCQKSKIIFIAW*LVNDKGFIFDSSILLFVSITXXXXXXXXXXXXXXXSRSPDTSKVRSKMIYASSKDRFKRELDGIQVXLQATDPTEMGLDVM 525
            +SG+    +C  KF ELK  +   ++++ + E ++ +VV K  E  D +++F A LP  +CR+AVYDF+F +      ++K+ FI W                                      SPD + V++KMI+ASSK+  +R LDGI   +QATD +E+  D +
Sbjct:    2 SSGVQPTQECLEKFQELKTGKKLTYVIYGLSEDKRSIVVLKASEDKD-FDSFVAELPEKDCRWAVYDFEFTLPGGEGVRNKLCFIVW--------------------------------------SPDDASVKNKMIFASSKEAIRRRLDGIHTEIQATDFSEITKDAL 131          
BLAST of EY728308 vs. ExPASy Swiss-Prot
Match: COF1_DICDI (Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.534e-16
Identity = 50/163 (30.67%), Postives = 79/163 (48.47%), Query Frame = 1
Query:   22 ASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAW*LVNDKGFIFDSSILLFVSITXXXXXXXXXXXXXXXSRSPDTSKVRSKMIYASSKDRFKRELDGIQVXLQATDPTEM 510
            +SG+A+  +C   F +LK  R Y  I+++I +  K+++V+       S++ FT  LP +ECRY V D+ +  +E  QKSKI F+AW                                       PDT+ ++ KM+  SSKD  ++   GIQV +Q TD +E+
Sbjct:    2 SSGIALAPNCVSTFNDLKLGRKYGGIIYRISDDSKEIIVDSTLPAGCSFDEFTKCLPENECRYVVLDYQY-KEEGAQKSKICFVAW--------------------------------------CPDTANIKKKMMATSSKDSLRKACVGIQVEIQGTDASEV 125          
BLAST of EY728308 vs. ExPASy Swiss-Prot
Match: CADF_DROME (Cofilin/actin-depolymerizing factor homolog OS=Drosophila melanogaster GN=tsr PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.935e-15
Identity = 49/179 (27.37%), Postives = 86/179 (48.04%), Query Frame = 1
Query:   22 ASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLP---ADECRYAVYDFDFV-----TDENCQKSKIIFIAW*LVNDKGFIFDSSILLFVSITXXXXXXXXXXXXXXXSRSPDTSKVRSKMIYASSKDRFKRELDGIQVXLQATDPTEMGLDVMRSR 534
            ASG+ V D CK  + E+K  + +R+++F I + +KQ+ VE + + +  Y+ F   +      ECRY ++DF+++     T E+ +K K+  ++W                                       PDT+KV+ KM+Y+SS D  K+ L G+Q  +QATD +E   + +  +
Sbjct:    2 ASGVTVSDVCKTTYEEIKKDKKHRYVIFYIRD-EKQIDVETVADRNAEYDQFLEDIQKCGPGECRYGLFDFEYMHQCQGTSESSKKQKLFLMSW--------------------------------------CPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASREAVEEK 141          
BLAST of EY728308 vs. ExPASy Swiss-Prot
Match: COFI_GIBZE (Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.755e-12
Identity = 52/170 (30.59%), Postives = 77/170 (45.29%), Query Frame = 1
Query:   46 DCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADEC-----------RYAVYDFDF-VTDENCQKSKIIFIAW*LVNDKGFIFDSSILLFVSITXXXXXXXXXXXXXXXSRSPDTSKVRSKMIYASSKDRFKRELDGIQVXLQATDPTEMGLD 519
            DC   F +LK  + Y+FIV+K+ +  K++V++K  E  D +E+F  +L                RYAVYDF++ +   +  ++KI FIAW                                      SPD + ++ KMIYASSK+  KR L GI   LQA D  ++  D
Sbjct:    2 DCITAFNDLKLNKKYKFIVYKLSDDYKEIVIDKASESRD-WEDFRETLVNATAKSRTGAVGKGPRYAVYDFEYNLASGDGIRNKITFIAW--------------------------------------SPDDAGIQPKMIYASSKEALKRSLTGIATELQANDTDDIEYD 132          
The following BLAST results are available for this feature:
BLAST of EY728308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
COFI_KLULA1.388e-1731.33Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1[more]
COFI_ASHGO2.367e-1730.72Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1[more]
COFI_CRYNE8.995e-1730.77Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV... [more]
COF1_DICDI1.534e-1630.67Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1... [more]
CADF_DROME4.935e-1527.37Cofilin/actin-depolymerizing factor homolog OS=Dro... [more]
COFI_GIBZE1.755e-1230.59Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-B02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728308 ID=EY728308; Name=EY728308; organism=Citrus sinensis; type=EST; length=893bp
CCACGCGTCCGGGCAAATGCAGCATCTGGAATGGCAGTCGACGATGACTG
CAAGCTGAAGTTTTTGGAATTGAAGGCAAAAAGGACTTACCGCTTCATAG
TTTTCAAGATTGAAGAGAAGCAGAAGCAGGTTGTTGTGGAGAAGCTTGGT
GAACCATCTGATAGTTATGAGAATTTCACTGCTAGCCTCCCAGCGGATGA
GTGCCGATACGCTGTCTACGATTTTGACTTTGTGACTGATGAGAACTGCC
AGAAGAGCAAGATTATTTTCATTGCATGGTAATTGGTCAATGATAAAGGA
TTTATTTTCGATTCTTCGATCCTTTTGTTTGTTTCCATCACAATTTTGCC
TTAATATTTCATACTAATAAATTTGTTGATTTACATATCAAGGTCCCCCG
ACACCTCAAAGGTGAGAAGCAAGATGATTTATGCTAGCTCCAAGGACAGG
TTCAAGAGAGAATTGGATGGAATTCAGGTANAGTTGCAGGCTACTGATCC
TACTGAGATGGGTCTTGATGTCATGAGAAGCCGCACAAATTANATTTTAG
ACTTGCCTATGGGTGCATGGAAAGCCCATACTATATTGTCCACTTAGATG
TAATGTCTATATCTTTGATGACTTATGACTTGGCTTGCTATCAGCCTGTG
GTCGGGAGTGAATAACTTTTTGAAGTGGCCGCGCCTTTGGTGATATCTGG
GGGTTAATAGGGGGAGGGTCCCCCGTGGTGTGGGTGCGGTGCCGAGCTAG
CATTAATGGTTGGTGGGGGGTCGGTCTCCGCGTTGGCCCGGGTGTCGGGC
GACGGGGGTGGTGGGCGGGGTGGCGGGGTGACCCGGCGGTTGTGCGTGTG
CGGCGGAGGCTCGGAAGAGGGGGGGGGCGGTGGGGGACATCGC
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