EY728299

Overview
NameEY728299
Unique NameEY728299
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY728299 vs. ExPASy Swiss-Prot
Match: GLGA_THEAB (Glycogen synthase OS=Thermosipho africanus (strain TCF52B) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.179e-11
Identity = 44/113 (38.94%), Postives = 60/113 (53.10%), Query Frame = 2 
Query:  260 GEDV-VFVANDWHTSLIPCYLKTMYKPKGMYKSARVVICIHNIAYQGRFAFEDFGLLNLPTHFKSSFDFIDGYNKPVIGRKICWMIAGILESDMV*SGSPAYAQDRCLVNTKE 595
            GE V V   NDW T L+P YLKT+YK    +    V++ IHN+ YQG F         LP +   + D I+ Y       KI ++  GIL SD++ + SP YAQ+   + TKE
Sbjct:  129 GEKVDVLHINDWQTGLVPVYLKTLYKDDEFFSKTVVLLTIHNLGYQGIFDSSYMNFSGLPDYL-YNIDGIEFYG------KINFLKGGILFSDVINTVSPTYAQE---IQTKE 231
[Close]
BLAST of EY728299 vs. ExPASy Swiss-Prot
Match: GLGA_OPITP (Glycogen synthase OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.070e-11
Identity = 46/139 (33.09%), Postives = 72/139 (51.80%), Query Frame = 2 
Query:  155 DYQDNQLRFSLLCQAALEPPRILNLNSNEYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSARVVICIHNIAYQGRFAFEDFGLLNLPTHFKSSFDFIDGYNKPVIGRKICWMIAGILESDMV*SGSPAYAQD 571
            DY+DN  RF   C+  +E  R+ ++ +          DVV  A+DW  +L+P  L+   + +G   + + +  IHNIA+QG F    F   NLP    +S D ++ Y       +I +M AGIL +D V + SP YA++
Sbjct:  107 DYEDNSDRFIFFCKGVVETLRLADMQA----------DVVH-AHDWQAALLPLLLREAERRQGGMLAMKTIFTIHNIAFQGIFPRAVFARTNLPDEL-NSVDGLEYY------EQINFMKAGILFADRVTTVSPRYAEE 227
The following BLAST results are available for this feature:
BLAST of EY728299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
GLGA_THEAB6.179e-1138.94Glycogen synthase OS=Thermosipho africanus (strain... [more]
GLGA_OPITP8.070e-1133.09Glycogen synthase OS=Opitutus terrae (strain DSM 1... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-A05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728299 ID=EY728299; Name=EY728299; organism=Citrus sinensis; type=EST; length=801bp
AATTGAGCTGAAAGTTGGAGACAAAATTGAAAAAGTTCGCTTCTTGCATT
GCCACAAGAGAGGAGTTGATCGGGTGTTTGTGGATCATCCTTGGTTTCTT
GCGAAGGTGTGGGGTAAAACCCAATCCAAAATCTATGGGCCTAGGACTGG
AGAGGACTACCAGGACAACCAACTTCGCTTCAGCTTGTTGTGCCAGGCAG
CTCTTGAACCACCGAGAATTCTGAATCTTAACAGCAACGAATATTTCTCT
GGACCATATGGTGAAGATGTCGTTTTTGTTGCTAATGACTGGCATACTTC
CCTTATCCCTTGTTACCTGAAAACTATGTATAAGCCCAAAGGGATGTACA
AAAGTGCCAGAGTGGTGATATGTATCCACAATATTGCTTACCAGGGAAGA
TTTGCATTTGAGGATTTTGGACTTCTCAACCTTCCAACTCATTTCAAAAG
CTCTTTTGACTTTATTGATGGATACAATAAACCTGTGATAGGAAGAAAAA
TCTGCTGGATGATAGCTGGAATATTAGAATCAGACATGGTCTGAAGTGGG
AGCCCAGCATATGCCCAAGACCGGTGTCTGGTGAACACCAAGGAATCGAA
TTGGATGACATCCTCCCCTAGAGTCGCCAAGGCGGCAACTCAGACGAGGT
CATGGAAGCGCGCAGCTCCTGCGGCTGGTCCGGAGGATAGGCTGGTCCCC
GCCGGACCCCTGCTCCTTCCGGCCTCCGCCCCCCCGCCGCGGGTGGAGAG
GTGCCGCCTACGTCCCCGCCTCCCACAGGGCGGGCGGGAGAGTGCATGCA
T
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