EY728279

Overview
NameEY728279
Unique NameEY728279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRR_PSEAB (Bifunctional protein pyrR OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=pyrR PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 7.625e-67
Identity = 125/167 (74.85%), Postives = 140/167 (83.83%), Query Frame = -2
Query:  306 MSXPNPRXXISQMRSXLKAHLEHRAISEPRFIGIRTGGVWVAQALLEELGSDSPLGTLDVSFYRDDFSQNGLHPQVRPSALPFEIEGQHLVLIDDVLMSGRTIRAAMNELFDYGRPASVTLVCLLDLDAGELPISPDVVGATLSLEAHQRVKLSGPTPLELELQDLA 806
            MS PNP   + +M S L+AHL  R I  PRF+GI TGG+WVA+ALL ELG+  PLGTLDVSFYRDDF+QNGLHPQVRPSALPFEI+GQHLVL+DDVLMSGRTIRAA+NELFDYGRPASVTLVCLLDL+A ELPI PDVVG TLSL   +RVKL GP PL LE + L+
Sbjct:    1 MSLPNPAELLPRMASDLRAHLAERGIERPRFVGIHTGGIWVAEALLRELGNQEPLGTLDVSFYRDDFTQNGLHPQVRPSALPFEIDGQHLVLVDDVLMSGRTIRAALNELFDYGRPASVTLVCLLDLNARELPIRPDVVGQTLSLGRDERVKLVGPAPLALERKVLS 167          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRR_PSEA8 (Bifunctional protein pyrR OS=Pseudomonas aeruginosa (strain LESB58) GN=pyrR PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 7.625e-67
Identity = 125/167 (74.85%), Postives = 140/167 (83.83%), Query Frame = -2
Query:  306 MSXPNPRXXISQMRSXLKAHLEHRAISEPRFIGIRTGGVWVAQALLEELGSDSPLGTLDVSFYRDDFSQNGLHPQVRPSALPFEIEGQHLVLIDDVLMSGRTIRAAMNELFDYGRPASVTLVCLLDLDAGELPISPDVVGATLSLEAHQRVKLSGPTPLELELQDLA 806
            MS PNP   + +M S L+AHL  R I  PRF+GI TGG+WVA+ALL ELG+  PLGTLDVSFYRDDF+QNGLHPQVRPSALPFEI+GQHLVL+DDVLMSGRTIRAA+NELFDYGRPASVTLVCLLDL+A ELPI PDVVG TLSL   +RVKL GP PL LE + L+
Sbjct:    1 MSLPNPAELLPRMASDLRAHLAERGIERPRFVGIHTGGIWVAEALLRELGNQEPLGTLDVSFYRDDFTQNGLHPQVRPSALPFEIDGQHLVLVDDVLMSGRTIRAALNELFDYGRPASVTLVCLLDLNARELPIRPDVVGQTLSLGRDERVKLVGPAPLALERKVLS 167          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRR_PSEA7 (Bifunctional protein pyrR OS=Pseudomonas aeruginosa (strain PA7) GN=pyrR PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 1.101e-65
Identity = 122/167 (73.05%), Postives = 141/167 (84.43%), Query Frame = -2
Query:  306 MSXPNPRXXISQMRSXLKAHLEHRAISEPRFIGIRTGGVWVAQALLEELGSDSPLGTLDVSFYRDDFSQNGLHPQVRPSALPFEIEGQHLVLIDDVLMSGRTIRAAMNELFDYGRPASVTLVCLLDLDAGELPISPDVVGATLSLEAHQRVKLSGPTPLELELQDLA 806
            MS PNP   + +M S L+AHL  R I  PR++GI TGG+WVA+ALL+ LG++ PLGTLDVSFYRDDF++NGLHPQVRPSALPFEI+GQHLVL+DDVLMSGRTIRAA+NELFDYGRPASVTLVCLLDL+A ELPI PDVVG TLSL   +RVKL GP PL LE + L+
Sbjct:    1 MSLPNPAELLPRMASDLRAHLAERGIERPRYVGIHTGGIWVAEALLKALGNEEPLGTLDVSFYRDDFTRNGLHPQVRPSALPFEIDGQHLVLVDDVLMSGRTIRAALNELFDYGRPASVTLVCLLDLNARELPIRPDVVGQTLSLGRDERVKLVGPAPLALERKVLS 167          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_PSEFS (Aspartate carbamoyltransferase OS=Pseudomonas fluorescens (strain SBW25) GN=pyrB PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.387e-44
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = -2
Query:    3 MTPLDAKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 275
            MTPLDAKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN
Sbjct:    1 MTPLDAKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 91          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_PSESM (Aspartate carbamoyltransferase OS=Pseudomonas syringae pv. tomato GN=pyrB PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.234e-42
Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = -2
Query:    3 MTPLDAKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 275
            MTPLDAKRPLQLN QGQL+HFLSLDGLPRELLTEILDTADSFLEVG RAVKKVPLLRGKT+CNVFFENSTRTRTTFELAAQRLSADVITLN
Sbjct:    1 MTPLDAKRPLQLNHQGQLRHFLSLDGLPRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAQRLSADVITLN 91          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_PSE14 (Aspartate carbamoyltransferase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=pyrB PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.234e-42
Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = -2
Query:    3 MTPLDAKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 275
            MTPLDAKRPLQLN QGQL+HFLSLDGLPRELLTEILDTADSFLEVG RAVKKVPLLRGKT+CNVFFENSTRTRTTFELAAQRLSADVITLN
Sbjct:    1 MTPLDAKRPLQLNHQGQLRHFLSLDGLPRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAQRLSADVITLN 91          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_PSEPW (Aspartate carbamoyltransferase OS=Pseudomonas putida (strain W619) GN=pyrB PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.109e-41
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = -2
Query:    3 MTPLDAKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 275
            MTP+DAKRPLQLN QGQL+HFLSLDGLPRELLTEILDTADSFLEVG RAVKKVPLLRGKT+CNVFFENSTRTRTTFELAAQRLSADVI+LN
Sbjct:    1 MTPIDAKRPLQLNDQGQLRHFLSLDGLPRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAQRLSADVISLN 91          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_PSEPU (Aspartate carbamoyltransferase OS=Pseudomonas putida GN=pyrB PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.109e-41
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = -2
Query:    3 MTPLDAKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 275
            MTP+DAKRPLQLN QGQL+HFLSLDGLPRELLTEILDTADSFLEVG RAVKKVPLLRGKT+CNVFFENSTRTRTTFELAAQRLSADVI+LN
Sbjct:    1 MTPIDAKRPLQLNDQGQLRHFLSLDGLPRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAQRLSADVISLN 91          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_PSEPK (Aspartate carbamoyltransferase OS=Pseudomonas putida (strain KT2440) GN=pyrB PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.109e-41
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = -2
Query:    3 MTPLDAKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 275
            MTP+DAKRPLQLN QGQL+HFLSLDGLPRELLTEILDTADSFLEVG RAVKKVPLLRGKT+CNVFFENSTRTRTTFELAAQRLSADVI+LN
Sbjct:    1 MTPIDAKRPLQLNDQGQLRHFLSLDGLPRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAQRLSADVISLN 91          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_PSEPG (Aspartate carbamoyltransferase OS=Pseudomonas putida (strain GB-1) GN=pyrB PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.109e-41
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = -2
Query:    3 MTPLDAKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 275
            MTP+DAKRPLQLN QGQL+HFLSLDGLPRELLTEILDTADSFLEVG RAVKKVPLLRGKT+CNVFFENSTRTRTTFELAAQRLSADVI+LN
Sbjct:    1 MTPIDAKRPLQLNDQGQLRHFLSLDGLPRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAQRLSADVISLN 91          
The following BLAST results are available for this feature:
BLAST of EY728279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 399
Match NameE-valueIdentityDescription
PYRR_PSEAB7.625e-6774.85Bifunctional protein pyrR OS=Pseudomonas aeruginos... [more]
PYRR_PSEA87.625e-6774.85Bifunctional protein pyrR OS=Pseudomonas aeruginos... [more]
PYRR_PSEA71.101e-6573.05Bifunctional protein pyrR OS=Pseudomonas aeruginos... [more]
PYRB_PSEFS2.387e-44100.00Aspartate carbamoyltransferase OS=Pseudomonas fluo... [more]
PYRB_PSESM2.234e-4295.60Aspartate carbamoyltransferase OS=Pseudomonas syri... [more]
PYRB_PSE142.234e-4295.60Aspartate carbamoyltransferase OS=Pseudomonas syri... [more]
PYRB_PSEPW1.109e-4193.41Aspartate carbamoyltransferase OS=Pseudomonas puti... [more]
PYRB_PSEPU1.109e-4193.41Aspartate carbamoyltransferase OS=Pseudomonas puti... [more]
PYRB_PSEPK1.109e-4193.41Aspartate carbamoyltransferase OS=Pseudomonas puti... [more]
PYRB_PSEPG1.109e-4193.41Aspartate carbamoyltransferase OS=Pseudomonas puti... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-G06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728279 ID=EY728279; Name=EY728279; organism=Citrus sinensis; type=EST; length=927bp
ACGTTCAGCGTGATCACGTCAGCCGACAGGCGCTGGGCCGCCAGCTCAAA
GGTGGTACGGGTGCGGGTCGAGTTCTCGAAGAACACGTTGCAGATGGTCT
TGCCGCGCAACAGCGGGACTTTTTTCACCGCCCGACCGCCGACTTCGAGG
AACGAGTCGGCCGTGTCGAGGATTTCGGTGAGCAGTTCGCGGGGCAAGCC
GTCGAGGGACAGGAAGTGTTGCAGCTGGCCCTGAGCATTGAGCTGCAGCG
GGCGCTTGGCATCTAGAGGCGTCATCGCGGGGACTCTTTACAAGGCGGTT
TAAAGGGCAAGGTCTTGCAGTTCGAGTTCGAGCGGCGTGGGACCGGACAA
TTTTACCCGCTGGTGGGCTTCCAGGGACAGGGTGGCGCCGACGACGTCCG
GGCTGATCGGCAATTCGCCGGCATCCAGGTCCAGCAGGCAGACCAGCGTC
ACGCTGGCCGGGCGGCCGTAGTCGAACAGCTCGTTCATGGCGGCGCGGAT
GGTGCGACCGCTCATCAGGACGTCATCGATCAGCACCAGGTGCTGGCCTT
CGATCTCGAACGGCAGGGCCGAAGGACGCACTTGCGGGTGCAGGCCGTTC
TGGCTGAAGTCGTCGCGGTAGAAGGACACGTCCAGGGTGCCGAGGGGCGA
GTCGCTGCCCAGTTCTTCCAAGAGCGCCTGGGCCACCCACACGCCACCGG
TACGAATGCCGATAAAACGCGGCTCGCTGATGGCGCGGTGTTCCAGGTGC
GCCTTGAGGCNGGATCGCATCTGGCTGATCANGNNTCGCGGATTGGGCAN
GCTCATGGTGGCTCCTTCANGGNCTTGNNCGCGCGGGGTTGCCCTGCAGG
TCCNGGCTCAACGTANGAGACGCGGNCAGCCGCGTCAGTCAGGATCAAAT
AANGCGTGTTTTCATCCAGCAGCCTGC
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