EY728279

Overview
NameEY728279
Unique NameEY728279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_PSEP1 (Aspartate carbamoyltransferase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=pyrB PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.109e-41
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = -2
Query:    3 MTPLDAKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 275
            MTP+DAKRPLQLN QGQL+HFLSLDGLPRELLTEILDTADSFLEVG RAVKKVPLLRGKT+CNVFFENSTRTRTTFELAAQRLSADVI+LN
Sbjct:    1 MTPIDAKRPLQLNDQGQLRHFLSLDGLPRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAQRLSADVISLN 91          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_PSEU2 (Aspartate carbamoyltransferase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=pyrB PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.448e-41
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = -2
Query:    3 MTPLDAKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 275
            MTPLDAKRPLQLN  GQL+HFLSLDGLPRELLTEILDTADSFLEVG RAVKKVPLLRGKT+CNVFFENSTRTRTTFELAAQRLSADVITLN
Sbjct:    1 MTPLDAKRPLQLNHLGQLRHFLSLDGLPRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAQRLSADVITLN 91          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_PSEE4 (Aspartate carbamoyltransferase OS=Pseudomonas entomophila (strain L48) GN=pyrB PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.891e-41
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = -2
Query:    3 MTPLDAKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 275
            MTP DAKRPLQLN QGQL+HFLSLDGLPRELLTEILDTADSFLEVG RAVKKVPLLRGKT+CNVFFENSTRTRTTFELAAQRLSADVI+LN
Sbjct:    1 MTPFDAKRPLQLNDQGQLRHFLSLDGLPRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAQRLSADVISLN 91          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_PSEU5 (Aspartate carbamoyltransferase OS=Pseudomonas stutzeri (strain A1501) GN=pyrB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.470e-41
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = -2
Query:    3 MTPLDAKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 275
            MTP DAKRPLQLN QGQL+HFLSLDGLPRELLTEILDTADSFLEVG RAVKKVPLLRGKT+CNVFFENSTRTRTTFELAA+RLSADVITLN
Sbjct:    1 MTPTDAKRPLQLNDQGQLRHFLSLDGLPRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAKRLSADVITLN 91          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_PSEF5 (Aspartate carbamoyltransferase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=pyrB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.470e-41
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = -2
Query:    3 MTPLDAKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 275
            MTPLDAKRPLQLN QGQL+HFLSLDGL RELLTEILDTADSFLEVG RAVKKVPLLRGKT+CNVFFENSTRTRTTFELAAQRLSADVITLN
Sbjct:    1 MTPLDAKRPLQLNDQGQLRHFLSLDGLNRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAQRLSADVITLN 91          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_PSEMY (Aspartate carbamoyltransferase OS=Pseudomonas mendocina (strain ymp) GN=pyrB PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.502e-41
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = -2
Query:    3 MTPLDAKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 275
            MTPL AKRPLQLN QGQL+HFLSLDGLPRELLTEILDTADSFLEVG RAVKKVPLLRGKT+CNVFFENSTRTRTTFELAAQRLSADVI+LN
Sbjct:    1 MTPLAAKRPLQLNDQGQLRHFLSLDGLPRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAQRLSADVISLN 91          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_PSEPF (Aspartate carbamoyltransferase OS=Pseudomonas fluorescens (strain Pf0-1) GN=pyrB PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 7.186e-41
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = -2
Query:    3 MTPLDAKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 275
            MTPLD KRPLQLN QGQL+HFLSLDGL RELLTEILDTADSFLEVG RAVKKVPLLRGKT+CNVFFENSTRTRTTFELAAQRLSADVITLN
Sbjct:    1 MTPLDTKRPLQLNDQGQLRHFLSLDGLRRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAQRLSADVITLN 91          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_PSEFA (Aspartate carbamoyltransferase OS=Pseudomonas fluorescens biotype A GN=pyrB PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 7.186e-41
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = -2
Query:    3 MTPLDAKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 275
            MTPL+ KRPLQLN QGQLQHFLSLDGL RELLTEILDTADSFLEVG RAVKKVPLLRGKT+CNVFFENSTRTRTTFELAAQRLSADVITLN
Sbjct:    1 MTPLETKRPLQLNDQGQLQHFLSLDGLRRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAQRLSADVITLN 91          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRR_NITOC (Bifunctional protein pyrR OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=pyrR PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 9.386e-41
Identity = 78/154 (50.65%), Postives = 112/154 (72.73%), Query Frame = -2
Query:  315 MRSXLKAHLEHRAISEPRFIGIRTGGVWVAQALLEELGS--DSPLGTLDVSFYRDDFSQNGLHPQVRPSALPFEIEGQHLVLIDDVLMSGRTIRAAMNELFDYGRPASVTLVCLLDLDAGELPISPDVVGATLSLEAHQRVKLSGPTPLELELQ 770
            + + L   +  +  ++P  IGI TGGVWVA+ LL +L +    PLG L++++YRDDF++ G+HPQV+PS LPF +  +H++L+DDVL +GRT+RAA+NE+FDYGRPASVTL  L++    ELPI  DVVG  L L  +++VKL+GP PL+  +Q
Sbjct:   18 LATGLNQRMAEQERNKPAMIGIHTGGVWVAERLLNQLDNLVSDPLGVLNIAYYRDDFTRIGMHPQVQPSQLPFSVADRHIILVDDVLYTGRTVRAALNEIFDYGRPASVTLAALVERAGRELPIQADVVGHHLDLAPNEQVKLTGPDPLQFSIQ 171          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_PSEAE (Aspartate carbamoyltransferase OS=Pseudomonas aeruginosa GN=pyrB PE=3 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 6.084e-40
Identity = 82/89 (92.13%), Postives = 86/89 (96.63%), Query Frame = -2
Query:    3 PLDAKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 269
            P DAKRPLQLN QGQL+HF+SLDGLPRELLTEILDTADSFLEVG RAVKKVPLLRGKT+CNVFFENSTRTRTTFELAAQRLSADVI+LN
Sbjct:    2 PTDAKRPLQLNDQGQLRHFISLDGLPRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAQRLSADVISLN 90          
The following BLAST results are available for this feature:
BLAST of EY728279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 399
Match NameE-valueIdentityDescription
PYRB_PSEP11.109e-4193.41Aspartate carbamoyltransferase OS=Pseudomonas puti... [more]
PYRB_PSEU21.448e-4194.51Aspartate carbamoyltransferase OS=Pseudomonas syri... [more]
PYRB_PSEE41.891e-4193.41Aspartate carbamoyltransferase OS=Pseudomonas ento... [more]
PYRB_PSEU52.470e-4193.41Aspartate carbamoyltransferase OS=Pseudomonas stut... [more]
PYRB_PSEF52.470e-4194.51Aspartate carbamoyltransferase OS=Pseudomonas fluo... [more]
PYRB_PSEMY5.502e-4193.41Aspartate carbamoyltransferase OS=Pseudomonas mend... [more]
PYRB_PSEPF7.186e-4193.41Aspartate carbamoyltransferase OS=Pseudomonas fluo... [more]
PYRB_PSEFA7.186e-4193.41Aspartate carbamoyltransferase OS=Pseudomonas fluo... [more]
PYRR_NITOC9.386e-4150.65Bifunctional protein pyrR OS=Nitrosococcus oceani ... [more]
PYRB_PSEAE6.084e-4092.13Aspartate carbamoyltransferase OS=Pseudomonas aeru... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-G06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728279 ID=EY728279; Name=EY728279; organism=Citrus sinensis; type=EST; length=927bp
ACGTTCAGCGTGATCACGTCAGCCGACAGGCGCTGGGCCGCCAGCTCAAA
GGTGGTACGGGTGCGGGTCGAGTTCTCGAAGAACACGTTGCAGATGGTCT
TGCCGCGCAACAGCGGGACTTTTTTCACCGCCCGACCGCCGACTTCGAGG
AACGAGTCGGCCGTGTCGAGGATTTCGGTGAGCAGTTCGCGGGGCAAGCC
GTCGAGGGACAGGAAGTGTTGCAGCTGGCCCTGAGCATTGAGCTGCAGCG
GGCGCTTGGCATCTAGAGGCGTCATCGCGGGGACTCTTTACAAGGCGGTT
TAAAGGGCAAGGTCTTGCAGTTCGAGTTCGAGCGGCGTGGGACCGGACAA
TTTTACCCGCTGGTGGGCTTCCAGGGACAGGGTGGCGCCGACGACGTCCG
GGCTGATCGGCAATTCGCCGGCATCCAGGTCCAGCAGGCAGACCAGCGTC
ACGCTGGCCGGGCGGCCGTAGTCGAACAGCTCGTTCATGGCGGCGCGGAT
GGTGCGACCGCTCATCAGGACGTCATCGATCAGCACCAGGTGCTGGCCTT
CGATCTCGAACGGCAGGGCCGAAGGACGCACTTGCGGGTGCAGGCCGTTC
TGGCTGAAGTCGTCGCGGTAGAAGGACACGTCCAGGGTGCCGAGGGGCGA
GTCGCTGCCCAGTTCTTCCAAGAGCGCCTGGGCCACCCACACGCCACCGG
TACGAATGCCGATAAAACGCGGCTCGCTGATGGCGCGGTGTTCCAGGTGC
GCCTTGAGGCNGGATCGCATCTGGCTGATCANGNNTCGCGGATTGGGCAN
GCTCATGGTGGCTCCTTCANGGNCTTGNNCGCGCGGGGTTGCCCTGCAGG
TCCNGGCTCAACGTANGAGACGCGGNCAGCCGCGTCAGTCAGGATCAAAT
AANGCGTGTTTTCATCCAGCAGCCTGC
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