EY728279

Overview
NameEY728279
Unique NameEY728279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_PSEAB (Aspartate carbamoyltransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=pyrB PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 6.084e-40
Identity = 82/89 (92.13%), Postives = 86/89 (96.63%), Query Frame = -2
Query:    3 PLDAKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 269
            P DAKRPLQLN QGQL+HF+SLDGLPRELLTEILDTADSFLEVG RAVKKVPLLRGKT+CNVFFENSTRTRTTFELAAQRLSADVI+LN
Sbjct:    2 PTDAKRPLQLNDQGQLRHFISLDGLPRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAQRLSADVISLN 90          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_PSEA8 (Aspartate carbamoyltransferase OS=Pseudomonas aeruginosa (strain LESB58) GN=pyrB PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 6.084e-40
Identity = 82/89 (92.13%), Postives = 86/89 (96.63%), Query Frame = -2
Query:    3 PLDAKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 269
            P DAKRPLQLN QGQL+HF+SLDGLPRELLTEILDTADSFLEVG RAVKKVPLLRGKT+CNVFFENSTRTRTTFELAAQRLSADVI+LN
Sbjct:    2 PTDAKRPLQLNDQGQLRHFISLDGLPRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAQRLSADVISLN 90          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_PSEA7 (Aspartate carbamoyltransferase OS=Pseudomonas aeruginosa (strain PA7) GN=pyrB PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 6.084e-40
Identity = 82/89 (92.13%), Postives = 86/89 (96.63%), Query Frame = -2
Query:    3 PLDAKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 269
            P DAKRPLQLN QGQL+HF+SLDGLPRELLTEILDTADSFLEVG RAVKKVPLLRGKT+CNVFFENSTRTRTTFELAAQRLSADVI+LN
Sbjct:    2 PTDAKRPLQLNDQGQLRHFISLDGLPRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAQRLSADVISLN 90          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_AZOVD (Aspartate carbamoyltransferase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=pyrB PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.312e-39
Identity = 82/91 (90.11%), Postives = 87/91 (95.60%), Query Frame = -2
Query:    3 MTPLDAKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 275
            MTP DAKRPLQLN QG+L+HFLSLDGL RELLTEILDTADSFLEVG RAVKKVPLLRG+T+CNVFFENSTRTRTTFE+AAQRLSADVITLN
Sbjct:    1 MTPNDAKRPLQLNDQGRLRHFLSLDGLSRELLTEILDTADSFLEVGTRAVKKVPLLRGRTVCNVFFENSTRTRTTFEMAAQRLSADVITLN 91          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_MARMS (Aspartate carbamoyltransferase OS=Marinomonas sp. (strain MWYL1) GN=pyrB PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.832e-29
Identity = 64/84 (76.19%), Postives = 74/84 (88.10%), Query Frame = -2
Query:    3 RPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 254
            R LQLN  GQL+HFL+LDGL + +LTEILD ADSFL +G ++VKKVPLLRGKT+ N+FFENSTRTRTTFELAA+RLSADVI LN
Sbjct:    7 RALQLNEHGQLKHFLTLDGLDKTILTEILDRADSFLSMGEQSVKKVPLLRGKTVVNLFFENSTRTRTTFELAAKRLSADVINLN 90          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_HAHCH (Aspartate carbamoyltransferase OS=Hahella chejuensis (strain KCTC 2396) GN=pyrB PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.190e-27
Identity = 60/87 (68.97%), Postives = 75/87 (86.21%), Query Frame = -2
Query:    3 DAKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 263
            D   PLQLN   QL+HFL+++GL R+ LT+ILDTAD+F+EVG R++KKVPLLRGKT+ N+FFE STRTRTTFELAA+RLSADV+ +N
Sbjct:    6 DELSPLQLNRFQQLRHFLTIEGLSRKHLTDILDTADTFIEVGSRSIKKVPLLRGKTVANLFFEASTRTRTTFELAAKRLSADVLNIN 92          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRR_RALSO (Bifunctional protein pyrR OS=Ralstonia solanacearum GN=pyrR PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.554e-27
Identity = 59/121 (48.76%), Postives = 87/121 (71.90%), Query Frame = -2
Query:  348 GIRTGGVWVAQALLEELGSDSPLGTLDVSFYRDDFSQNGLHPQVRPSALPFEIEGQHLVLIDDVLMSGRTIRAAMNELFDYGRPASVTLVCLLDLDAGELPISPDVVGATLSLEAHQRVKL 710
            GI +GG W+A  L  +LG     G ++V+ +RDD+++ GLH Q +P+ LPFE+E + ++L+DDVL +GRTIRAA+NELFDYGRPA+V L  L+D    +LPI+PD +G  ++L A + + L
Sbjct:   35 GIVSGGAWIAARLALDLGLRE-YGIVNVALHRDDYAKKGLHAQAQPTTLPFEVEERRILLVDDVLATGRTIRAAINELFDYGRPAAVELAVLVDRGERQLPIAPDYIGERIALAADESLVL 154          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_MARAV (Aspartate carbamoyltransferase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=pyrB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.522e-27
Identity = 59/82 (71.95%), Postives = 74/82 (90.24%), Query Frame = -2
Query:    3 LQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 248
            LQL   GQL+HFL+LDGL + LLT+ILDTADSF+EVG R++KKVPLLRG+T+ N+FFE+STRTR+TFELAA+RLSADV+ L+
Sbjct:   11 LQLTRDGQLRHFLTLDGLGQPLLTDILDTADSFIEVGERSIKKVPLLRGRTVVNLFFESSTRTRSTFELAAKRLSADVLNLD 92          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_METFK (Aspartate carbamoyltransferase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=pyrB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.714e-27
Identity = 58/81 (71.60%), Postives = 70/81 (86.42%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H L+ +GLPR +L +ILDTA+SF+ V  R VKKVPLLRGKT+CN+FFENSTRTRTTFE+AA+RLSADVITLN
Sbjct:    5 QLTKDGKLKHLLTTEGLPRAILNQILDTAESFVGVAEREVKKVPLLRGKTVCNIFFENSTRTRTTFEIAAKRLSADVITLN 85          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_RHOFD (Aspartate carbamoyltransferase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=pyrB PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.931e-26
Identity = 57/85 (67.06%), Postives = 72/85 (84.71%), Query Frame = -2
Query:    3 KRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 257
            KR LQLN  G+L H LS +GLP+ +LT++LDTA +F+ +G R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA+RLSADVI L+
Sbjct:    4 KRNLQLNKNGELIHLLSTEGLPKSILTQVLDTATNFVSIGDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVINLD 88          
The following BLAST results are available for this feature:
BLAST of EY728279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 399
Match NameE-valueIdentityDescription
PYRB_PSEAB6.084e-4092.13Aspartate carbamoyltransferase OS=Pseudomonas aeru... [more]
PYRB_PSEA86.084e-4092.13Aspartate carbamoyltransferase OS=Pseudomonas aeru... [more]
PYRB_PSEA76.084e-4092.13Aspartate carbamoyltransferase OS=Pseudomonas aeru... [more]
PYRB_AZOVD2.312e-3990.11Aspartate carbamoyltransferase OS=Azotobacter vine... [more]
PYRB_MARMS4.832e-2976.19Aspartate carbamoyltransferase OS=Marinomonas sp. ... [more]
PYRB_HAHCH1.190e-2768.97Aspartate carbamoyltransferase OS=Hahella chejuens... [more]
PYRR_RALSO1.554e-2748.76Bifunctional protein pyrR OS=Ralstonia solanacearu... [more]
PYRB_MARAV4.522e-2771.95Aspartate carbamoyltransferase OS=Marinobacter aqu... [more]
PYRB_METFK7.714e-2771.60Aspartate carbamoyltransferase OS=Methylobacillus ... [more]
PYRB_RHOFD2.931e-2667.06Aspartate carbamoyltransferase OS=Rhodoferax ferri... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-G06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728279 ID=EY728279; Name=EY728279; organism=Citrus sinensis; type=EST; length=927bp
ACGTTCAGCGTGATCACGTCAGCCGACAGGCGCTGGGCCGCCAGCTCAAA
GGTGGTACGGGTGCGGGTCGAGTTCTCGAAGAACACGTTGCAGATGGTCT
TGCCGCGCAACAGCGGGACTTTTTTCACCGCCCGACCGCCGACTTCGAGG
AACGAGTCGGCCGTGTCGAGGATTTCGGTGAGCAGTTCGCGGGGCAAGCC
GTCGAGGGACAGGAAGTGTTGCAGCTGGCCCTGAGCATTGAGCTGCAGCG
GGCGCTTGGCATCTAGAGGCGTCATCGCGGGGACTCTTTACAAGGCGGTT
TAAAGGGCAAGGTCTTGCAGTTCGAGTTCGAGCGGCGTGGGACCGGACAA
TTTTACCCGCTGGTGGGCTTCCAGGGACAGGGTGGCGCCGACGACGTCCG
GGCTGATCGGCAATTCGCCGGCATCCAGGTCCAGCAGGCAGACCAGCGTC
ACGCTGGCCGGGCGGCCGTAGTCGAACAGCTCGTTCATGGCGGCGCGGAT
GGTGCGACCGCTCATCAGGACGTCATCGATCAGCACCAGGTGCTGGCCTT
CGATCTCGAACGGCAGGGCCGAAGGACGCACTTGCGGGTGCAGGCCGTTC
TGGCTGAAGTCGTCGCGGTAGAAGGACACGTCCAGGGTGCCGAGGGGCGA
GTCGCTGCCCAGTTCTTCCAAGAGCGCCTGGGCCACCCACACGCCACCGG
TACGAATGCCGATAAAACGCGGCTCGCTGATGGCGCGGTGTTCCAGGTGC
GCCTTGAGGCNGGATCGCATCTGGCTGATCANGNNTCGCGGATTGGGCAN
GCTCATGGTGGCTCCTTCANGGNCTTGNNCGCGCGGGGTTGCCCTGCAGG
TCCNGGCTCAACGTANGAGACGCGGNCAGCCGCGTCAGTCAGGATCAAAT
AANGCGTGTTTTCATCCAGCAGCCTGC
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