EY728279

Overview
NameEY728279
Unique NameEY728279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_ALCBS (Aspartate carbamoyltransferase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=pyrB PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.828e-26
Identity = 61/92 (66.30%), Postives = 76/92 (82.61%), Query Frame = -2
Query:    3 MTP-LDAKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 275
            MTP L     +QL   G+L+HFL+ + LPR LL +ILDTA SF++VGGRA+KKVPLLRGKT+ N+FFE+STRTR+TFELAAQRLSADV+ L+
Sbjct:    1 MTPTLAPSSRVQLTDSGKLRHFLTTEHLPRSLLEDILDTAASFVDVGGRAIKKVPLLRGKTVVNLFFESSTRTRSTFELAAQRLSADVLNLD 92          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_NITOC (Aspartate carbamoyltransferase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=pyrB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.000e-26
Identity = 60/82 (73.17%), Postives = 70/82 (85.37%), Query Frame = -2
Query:    3 LQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 248
            LQL+  GQL+HFLS+ GL RELLT ILDTA+SF  +G + VKKVPLLRGKTI N+FFENSTRT +TFELAA+RLSADV+ LN
Sbjct:    4 LQLDQNGQLRHFLSIQGLNRELLTRILDTAESFSTIGAQHVKKVPLLRGKTIVNLFFENSTRTLSTFELAAKRLSADVMNLN 85          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_METPP (Aspartate carbamoyltransferase OS=Methylibium petroleiphilum (strain PM1) GN=pyrB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.000e-26
Identity = 59/85 (69.41%), Postives = 72/85 (84.71%), Query Frame = -2
Query:    3 KRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 257
            KR  QLNA G+L H LS++GLP+ +LT+ILDTA +FL V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA+RLSADVI L+
Sbjct:    4 KRNPQLNAHGELIHLLSIEGLPKAVLTQILDTAGTFLSVNDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVINLD 88          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_AZOSB (Aspartate carbamoyltransferase OS=Azoarcus sp. (strain BH72) GN=pyrB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.000e-26
Identity = 57/81 (70.37%), Postives = 69/81 (85.19%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QLN  G+LQH L+LDGLPR+++T ILDTA  F EV  R VKK+PLLRGK++ N+FFENSTRTRTTFE+AA+RLSADV+ LN
Sbjct:    5 QLNEHGELQHLLTLDGLPRQIITAILDTAAPFTEVAEREVKKLPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVVNLN 85          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_METCA (Aspartate carbamoyltransferase OS=Methylococcus capsulatus GN=pyrB PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.530e-26
Identity = 58/86 (67.44%), Postives = 72/86 (83.72%), Query Frame = -2
Query:    3 AKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 260
            A   +QL A G+L+HFL+++GL RELLT I+DTA+SF  V  + VKKVPLLRGKT+ N+FFENSTRTRTTFELAA+RLSADV+ +N
Sbjct:    5 AAADIQLTASGRLRHFLTIEGLSRELLTRIMDTAESFAGVTAQNVKKVPLLRGKTVVNLFFENSTRTRTTFELAAKRLSADVLNIN 90          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_AZOSE (Aspartate carbamoyltransferase OS=Azoarcus sp. (strain EbN1) GN=pyrB PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.530e-26
Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QLN  G+LQH L++DGLPR +LT ILDTA  F EV  R VKK+PLLRGK+I N+FFENSTRTRTTFE+AA+RLSADV+ LN
Sbjct:    5 QLNKHGELQHLLTIDGLPRSILTAILDTAAPFTEVAEREVKKLPLLRGKSIFNLFFENSTRTRTTFEIAAKRLSADVVNLN 85          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_THIDA (Aspartate carbamoyltransferase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=pyrB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.114e-25
Identity = 58/81 (71.60%), Postives = 69/81 (85.19%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H L+LDGLPR  LT ILDTA+SF++VG R VKKVPLLRGK+I N+FFE STRTRTTFE+AA+RLSADV+ LN
Sbjct:    4 QLTPDGRLRHLLTLDGLPRATLTHILDTAESFMDVGEREVKKVPLLRGKSIFNLFFEPSTRTRTTFEIAAKRLSADVVNLN 84          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_HALHL (Aspartate carbamoyltransferase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=pyrB PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.455e-25
Identity = 58/82 (70.73%), Postives = 72/82 (87.80%), Query Frame = -2
Query:    3 LQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 248
            +QL+ QGQL+H ++ +GLPRELLT ILDTA+SF  V G++VKKVPLLRG+TI N+FFE STRTRTTFELAAQRLSADV+ ++
Sbjct:    3 VQLDPQGQLRHLVTTEGLPRELLTRILDTAESFSGVLGKSVKKVPLLRGRTIINLFFEPSTRTRTTFELAAQRLSADVLNID 84          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_DECAR (Aspartate carbamoyltransferase OS=Dechloromonas aromatica (strain RCB) GN=pyrB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.481e-25
Identity = 56/81 (69.14%), Postives = 69/81 (85.19%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QLN  G+L H LS++GLP+ +L +ILDTA SF+EV  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA+RLSADVI L+
Sbjct:    5 QLNKNGELSHLLSVEGLPKAILNQILDTAASFMEVSAREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVINLD 85          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_LEPCP (Aspartate carbamoyltransferase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=pyrB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.233e-25
Identity = 58/86 (67.44%), Postives = 71/86 (82.56%), Query Frame = -2
Query:    3 AKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 260
            ++R  QLN  G+L H LS +GLPR +LT+ILDTA +FL V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA+RLSADVI L+
Sbjct:    3 SRRNPQLNNHGELIHLLSTEGLPRAVLTQILDTASTFLSVNDRDVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVINLD 88          
The following BLAST results are available for this feature:
BLAST of EY728279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 399
Match NameE-valueIdentityDescription
PYRB_ALCBS3.828e-2666.30Aspartate carbamoyltransferase OS=Alcanivorax bork... [more]
PYRB_NITOC5.000e-2673.17Aspartate carbamoyltransferase OS=Nitrosococcus oc... [more]
PYRB_METPP5.000e-2669.41Aspartate carbamoyltransferase OS=Methylibium petr... [more]
PYRB_AZOSB5.000e-2670.37Aspartate carbamoyltransferase OS=Azoarcus sp. (st... [more]
PYRB_METCA6.530e-2667.44Aspartate carbamoyltransferase OS=Methylococcus ca... [more]
PYRB_AZOSE6.530e-2671.60Aspartate carbamoyltransferase OS=Azoarcus sp. (st... [more]
PYRB_THIDA1.114e-2571.60Aspartate carbamoyltransferase OS=Thiobacillus den... [more]
PYRB_HALHL1.455e-2570.73Aspartate carbamoyltransferase OS=Halorhodospira h... [more]
PYRB_DECAR2.481e-2569.14Aspartate carbamoyltransferase OS=Dechloromonas ar... [more]
PYRB_LEPCP4.233e-2567.44Aspartate carbamoyltransferase OS=Leptothrix cholo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-G06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728279 ID=EY728279; Name=EY728279; organism=Citrus sinensis; type=EST; length=927bp
ACGTTCAGCGTGATCACGTCAGCCGACAGGCGCTGGGCCGCCAGCTCAAA
GGTGGTACGGGTGCGGGTCGAGTTCTCGAAGAACACGTTGCAGATGGTCT
TGCCGCGCAACAGCGGGACTTTTTTCACCGCCCGACCGCCGACTTCGAGG
AACGAGTCGGCCGTGTCGAGGATTTCGGTGAGCAGTTCGCGGGGCAAGCC
GTCGAGGGACAGGAAGTGTTGCAGCTGGCCCTGAGCATTGAGCTGCAGCG
GGCGCTTGGCATCTAGAGGCGTCATCGCGGGGACTCTTTACAAGGCGGTT
TAAAGGGCAAGGTCTTGCAGTTCGAGTTCGAGCGGCGTGGGACCGGACAA
TTTTACCCGCTGGTGGGCTTCCAGGGACAGGGTGGCGCCGACGACGTCCG
GGCTGATCGGCAATTCGCCGGCATCCAGGTCCAGCAGGCAGACCAGCGTC
ACGCTGGCCGGGCGGCCGTAGTCGAACAGCTCGTTCATGGCGGCGCGGAT
GGTGCGACCGCTCATCAGGACGTCATCGATCAGCACCAGGTGCTGGCCTT
CGATCTCGAACGGCAGGGCCGAAGGACGCACTTGCGGGTGCAGGCCGTTC
TGGCTGAAGTCGTCGCGGTAGAAGGACACGTCCAGGGTGCCGAGGGGCGA
GTCGCTGCCCAGTTCTTCCAAGAGCGCCTGGGCCACCCACACGCCACCGG
TACGAATGCCGATAAAACGCGGCTCGCTGATGGCGCGGTGTTCCAGGTGC
GCCTTGAGGCNGGATCGCATCTGGCTGATCANGNNTCGCGGATTGGGCAN
GCTCATGGTGGCTCCTTCANGGNCTTGNNCGCGCGGGGTTGCCCTGCAGG
TCCNGGCTCAACGTANGAGACGCGGNCAGCCGCGTCAGTCAGGATCAAAT
AANGCGTGTTTTCATCCAGCAGCCTGC
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