EY728279

Overview
NameEY728279
Unique NameEY728279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_VEREI (Aspartate carbamoyltransferase OS=Verminephrobacter eiseniae (strain EF01-2) GN=pyrB PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.528e-25
Identity = 56/85 (65.88%), Postives = 71/85 (83.53%), Query Frame = -2
Query:    3 KRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 257
            +R  QLN QG+L H LS++GLPR+++T ILDTA +F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA+RLSADV  L+
Sbjct:    4 QRNPQLNGQGELIHLLSIEGLPRDIVTHILDTAANFVSVNDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVFNLD 88          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_ACIAC (Aspartate carbamoyltransferase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=pyrB PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.220e-25
Identity = 56/86 (65.12%), Postives = 71/86 (82.56%), Query Frame = -2
Query:    3 AKRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 260
            +KR  QLN  G+L H LS++GLPR ++T ILDTA +F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA+RLSADV+ L+
Sbjct:    3 SKRNPQLNRNGELIHLLSIEGLPRSIVTHILDTAANFVSVNDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVLNLD 88          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_VARPS (Aspartate carbamoyltransferase OS=Variovorax paradoxus (strain S110) GN=pyrB PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.232e-24
Identity = 56/85 (65.88%), Postives = 70/85 (82.35%), Query Frame = -2
Query:    3 KRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 257
            KR  QLN  G+L H LS++GLP++++T ILDTA +F  V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA+RLSADVI L+
Sbjct:    4 KRNPQLNKNGELIHLLSIEGLPKDIVTHILDTAANFTSVSDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVINLD 88          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_POLSJ (Aspartate carbamoyltransferase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=pyrB PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.232e-24
Identity = 56/85 (65.88%), Postives = 70/85 (82.35%), Query Frame = -2
Query:    3 KRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 257
            +R  QLN  G+L H LS++GLP+ +LT+ILDTA +F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA RLSADVI L+
Sbjct:    4 RRNPQLNKNGELIHLLSIEGLPKAILTQILDTAANFVSVNNREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAATRLSADVINLD 88          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_HERAR (Aspartate carbamoyltransferase OS=Herminiimonas arsenicoxydans GN=pyrB PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.232e-24
Identity = 53/81 (65.43%), Postives = 68/81 (83.95%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QLN  G+LQH L+++GLP+  +  ILDTA SF+ +G R VKKVPL+RGK++ N+FFENSTRTRTTFE+A++RLSADVI LN
Sbjct:    5 QLNKNGELQHLLTIEGLPKSNIIHILDTASSFVSIGDREVKKVPLMRGKSVFNLFFENSTRTRTTFEIASKRLSADVINLN 85          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_JANMA (Aspartate carbamoyltransferase OS=Janthinobacterium sp. (strain Marseille) GN=pyrB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.608e-24
Identity = 53/81 (65.43%), Postives = 68/81 (83.95%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QLN  G+LQH L+++GLP+  +  ILDTA SF+ +G R VKKVPL+RGK++ N+FFENSTRTRTTFE+A++RLSADVI LN
Sbjct:    5 QLNKNGELQHLLTIEGLPKANILHILDTASSFVSIGDREVKKVPLMRGKSVFNLFFENSTRTRTTFEIASKRLSADVINLN 85          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_BURTA (Aspartate carbamoyltransferase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=pyrB PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.101e-24
Identity = 54/81 (66.67%), Postives = 68/81 (83.95%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H L+++GLPR +L +ILDTA+ F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA+RLSADVI LN
Sbjct:   31 QLTKNGELKHLLTIEGLPRAILNQILDTAEQFVSVTDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVINLN 111          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_BURPS (Aspartate carbamoyltransferase OS=Burkholderia pseudomallei GN=pyrB PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.101e-24
Identity = 54/81 (66.67%), Postives = 68/81 (83.95%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H L+++GLPR +L +ILDTA+ F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA+RLSADVI LN
Sbjct:   31 QLTKNGELKHLLTIEGLPRAILNQILDTAEQFVSVTDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVINLN 111          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_BURP6 (Aspartate carbamoyltransferase OS=Burkholderia pseudomallei (strain 668) GN=pyrB PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.101e-24
Identity = 54/81 (66.67%), Postives = 68/81 (83.95%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H L+++GLPR +L +ILDTA+ F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA+RLSADVI LN
Sbjct:   31 QLTKNGELKHLLTIEGLPRAILNQILDTAEQFVSVTDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVINLN 111          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_BURP1 (Aspartate carbamoyltransferase OS=Burkholderia pseudomallei (strain 1710b) GN=pyrB PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.101e-24
Identity = 54/81 (66.67%), Postives = 68/81 (83.95%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H L+++GLPR +L +ILDTA+ F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA+RLSADVI LN
Sbjct:   31 QLTKNGELKHLLTIEGLPRAILNQILDTAEQFVSVTDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVINLN 111          
The following BLAST results are available for this feature:
BLAST of EY728279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 399
Match NameE-valueIdentityDescription
PYRB_VEREI5.528e-2565.88Aspartate carbamoyltransferase OS=Verminephrobacte... [more]
PYRB_ACIAC7.220e-2565.12Aspartate carbamoyltransferase OS=Acidovorax avena... [more]
PYRB_VARPS1.232e-2465.88Aspartate carbamoyltransferase OS=Variovorax parad... [more]
PYRB_POLSJ1.232e-2465.88Aspartate carbamoyltransferase OS=Polaromonas sp. ... [more]
PYRB_HERAR1.232e-2465.43Aspartate carbamoyltransferase OS=Herminiimonas ar... [more]
PYRB_JANMA1.608e-2465.43Aspartate carbamoyltransferase OS=Janthinobacteriu... [more]
PYRB_BURTA2.101e-2466.67Aspartate carbamoyltransferase OS=Burkholderia tha... [more]
PYRB_BURPS2.101e-2466.67Aspartate carbamoyltransferase OS=Burkholderia pse... [more]
PYRB_BURP62.101e-2466.67Aspartate carbamoyltransferase OS=Burkholderia pse... [more]
PYRB_BURP12.101e-2466.67Aspartate carbamoyltransferase OS=Burkholderia pse... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-G06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728279 ID=EY728279; Name=EY728279; organism=Citrus sinensis; type=EST; length=927bp
ACGTTCAGCGTGATCACGTCAGCCGACAGGCGCTGGGCCGCCAGCTCAAA
GGTGGTACGGGTGCGGGTCGAGTTCTCGAAGAACACGTTGCAGATGGTCT
TGCCGCGCAACAGCGGGACTTTTTTCACCGCCCGACCGCCGACTTCGAGG
AACGAGTCGGCCGTGTCGAGGATTTCGGTGAGCAGTTCGCGGGGCAAGCC
GTCGAGGGACAGGAAGTGTTGCAGCTGGCCCTGAGCATTGAGCTGCAGCG
GGCGCTTGGCATCTAGAGGCGTCATCGCGGGGACTCTTTACAAGGCGGTT
TAAAGGGCAAGGTCTTGCAGTTCGAGTTCGAGCGGCGTGGGACCGGACAA
TTTTACCCGCTGGTGGGCTTCCAGGGACAGGGTGGCGCCGACGACGTCCG
GGCTGATCGGCAATTCGCCGGCATCCAGGTCCAGCAGGCAGACCAGCGTC
ACGCTGGCCGGGCGGCCGTAGTCGAACAGCTCGTTCATGGCGGCGCGGAT
GGTGCGACCGCTCATCAGGACGTCATCGATCAGCACCAGGTGCTGGCCTT
CGATCTCGAACGGCAGGGCCGAAGGACGCACTTGCGGGTGCAGGCCGTTC
TGGCTGAAGTCGTCGCGGTAGAAGGACACGTCCAGGGTGCCGAGGGGCGA
GTCGCTGCCCAGTTCTTCCAAGAGCGCCTGGGCCACCCACACGCCACCGG
TACGAATGCCGATAAAACGCGGCTCGCTGATGGCGCGGTGTTCCAGGTGC
GCCTTGAGGCNGGATCGCATCTGGCTGATCANGNNTCGCGGATTGGGCAN
GCTCATGGTGGCTCCTTCANGGNCTTGNNCGCGCGGGGTTGCCCTGCAGG
TCCNGGCTCAACGTANGAGACGCGGNCAGCCGCGTCAGTCAGGATCAAAT
AANGCGTGTTTTCATCCAGCAGCCTGC
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