EY728279

Overview
NameEY728279
Unique NameEY728279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_BURP0 (Aspartate carbamoyltransferase OS=Burkholderia pseudomallei (strain 1106a) GN=pyrB PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.101e-24
Identity = 54/81 (66.67%), Postives = 68/81 (83.95%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H L+++GLPR +L +ILDTA+ F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA+RLSADVI LN
Sbjct:   31 QLTKNGELKHLLTIEGLPRAILNQILDTAEQFVSVTDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVINLN 111          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_BURMS (Aspartate carbamoyltransferase OS=Burkholderia mallei (strain SAVP1) GN=pyrB PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.101e-24
Identity = 54/81 (66.67%), Postives = 68/81 (83.95%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H L+++GLPR +L +ILDTA+ F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA+RLSADVI LN
Sbjct:   31 QLTKNGELKHLLTIEGLPRAILNQILDTAEQFVSVTDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVINLN 111          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_BURMA (Aspartate carbamoyltransferase OS=Burkholderia mallei GN=pyrB PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.101e-24
Identity = 54/81 (66.67%), Postives = 68/81 (83.95%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H L+++GLPR +L +ILDTA+ F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA+RLSADVI LN
Sbjct:   31 QLTKNGELKHLLTIEGLPRAILNQILDTAEQFVSVTDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVINLN 111          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_BURM9 (Aspartate carbamoyltransferase OS=Burkholderia mallei (strain NCTC 10229) GN=pyrB PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.101e-24
Identity = 54/81 (66.67%), Postives = 68/81 (83.95%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H L+++GLPR +L +ILDTA+ F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA+RLSADVI LN
Sbjct:   31 QLTKNGELKHLLTIEGLPRAILNQILDTAEQFVSVTDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVINLN 111          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_BURM7 (Aspartate carbamoyltransferase OS=Burkholderia mallei (strain NCTC 10247) GN=pyrB PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.101e-24
Identity = 54/81 (66.67%), Postives = 68/81 (83.95%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H L+++GLPR +L +ILDTA+ F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA+RLSADVI LN
Sbjct:   31 QLTKNGELKHLLTIEGLPRAILNQILDTAEQFVSVTDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVINLN 111          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_DIAST (Aspartate carbamoyltransferase OS=Diaphorobacter sp. (strain TPSY) GN=pyrB PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.583e-24
Identity = 55/85 (64.71%), Postives = 70/85 (82.35%), Query Frame = -2
Query:    3 KRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 257
            KR  QLN  G+L H LS++GLP++++T ILDTA +F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA+RLSADV  L+
Sbjct:    4 KRNPQLNKNGELIHLLSIEGLPKDIVTHILDTATNFVSVQEREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVFNLD 88          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_ALHEH (Aspartate carbamoyltransferase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=pyrB PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.583e-24
Identity = 55/81 (67.90%), Postives = 70/81 (86.42%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL+ QG+L+HFL+ +GLPR LL +ILDTA+SF  V G++VKKVPLLRG+T+ N+FFE STRTRTTFELAA RLSADV+ ++
Sbjct:    4 QLDNQGRLRHFLTTEGLPRPLLNQILDTAESFTGVIGKSVKKVPLLRGRTVINLFFEPSTRTRTTFELAATRLSADVLNID 84          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_ACISJ (Aspartate carbamoyltransferase OS=Acidovorax sp. (strain JS42) GN=pyrB PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.583e-24
Identity = 55/85 (64.71%), Postives = 70/85 (82.35%), Query Frame = -2
Query:    3 KRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 257
            KR  QLN  G+L H LS++GLP++++T ILDTA +F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA+RLSADV  L+
Sbjct:    4 KRNPQLNKNGELIHLLSIEGLPKDIVTHILDTATNFVSVQEREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVFNLD 88          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_BURXL (Aspartate carbamoyltransferase OS=Burkholderia xenovorans (strain LB400) GN=pyrB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.982e-24
Identity = 53/81 (65.43%), Postives = 66/81 (81.48%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H LS++GLP+ ++  ILDTAD F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA RLSADV+ LN
Sbjct:   29 QLTKNGELKHLLSIEGLPKAIVNHILDTADQFVSVTDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAATRLSADVLNLN 109          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_BURVG (Aspartate carbamoyltransferase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=pyrB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.982e-24
Identity = 53/81 (65.43%), Postives = 66/81 (81.48%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H LS++GLPR ++  ILDTA+ F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA RLSADV+ LN
Sbjct:   31 QLTKNGELKHLLSIEGLPRSIVNHILDTAEQFVSVTDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAATRLSADVLNLN 111          
The following BLAST results are available for this feature:
BLAST of EY728279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 399
Match NameE-valueIdentityDescription
PYRB_BURP02.101e-2466.67Aspartate carbamoyltransferase OS=Burkholderia pse... [more]
PYRB_BURMS2.101e-2466.67Aspartate carbamoyltransferase OS=Burkholderia mal... [more]
PYRB_BURMA2.101e-2466.67Aspartate carbamoyltransferase OS=Burkholderia mal... [more]
PYRB_BURM92.101e-2466.67Aspartate carbamoyltransferase OS=Burkholderia mal... [more]
PYRB_BURM72.101e-2466.67Aspartate carbamoyltransferase OS=Burkholderia mal... [more]
PYRB_DIAST3.583e-2464.71Aspartate carbamoyltransferase OS=Diaphorobacter s... [more]
PYRB_ALHEH3.583e-2467.90Aspartate carbamoyltransferase OS=Alkalilimnicola ... [more]
PYRB_ACISJ3.583e-2464.71Aspartate carbamoyltransferase OS=Acidovorax sp. (... [more]
PYRB_BURXL7.982e-2465.43Aspartate carbamoyltransferase OS=Burkholderia xen... [more]
PYRB_BURVG7.982e-2465.43Aspartate carbamoyltransferase OS=Burkholderia vie... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-G06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728279 ID=EY728279; Name=EY728279; organism=Citrus sinensis; type=EST; length=927bp
ACGTTCAGCGTGATCACGTCAGCCGACAGGCGCTGGGCCGCCAGCTCAAA
GGTGGTACGGGTGCGGGTCGAGTTCTCGAAGAACACGTTGCAGATGGTCT
TGCCGCGCAACAGCGGGACTTTTTTCACCGCCCGACCGCCGACTTCGAGG
AACGAGTCGGCCGTGTCGAGGATTTCGGTGAGCAGTTCGCGGGGCAAGCC
GTCGAGGGACAGGAAGTGTTGCAGCTGGCCCTGAGCATTGAGCTGCAGCG
GGCGCTTGGCATCTAGAGGCGTCATCGCGGGGACTCTTTACAAGGCGGTT
TAAAGGGCAAGGTCTTGCAGTTCGAGTTCGAGCGGCGTGGGACCGGACAA
TTTTACCCGCTGGTGGGCTTCCAGGGACAGGGTGGCGCCGACGACGTCCG
GGCTGATCGGCAATTCGCCGGCATCCAGGTCCAGCAGGCAGACCAGCGTC
ACGCTGGCCGGGCGGCCGTAGTCGAACAGCTCGTTCATGGCGGCGCGGAT
GGTGCGACCGCTCATCAGGACGTCATCGATCAGCACCAGGTGCTGGCCTT
CGATCTCGAACGGCAGGGCCGAAGGACGCACTTGCGGGTGCAGGCCGTTC
TGGCTGAAGTCGTCGCGGTAGAAGGACACGTCCAGGGTGCCGAGGGGCGA
GTCGCTGCCCAGTTCTTCCAAGAGCGCCTGGGCCACCCACACGCCACCGG
TACGAATGCCGATAAAACGCGGCTCGCTGATGGCGCGGTGTTCCAGGTGC
GCCTTGAGGCNGGATCGCATCTGGCTGATCANGNNTCGCGGATTGGGCAN
GCTCATGGTGGCTCCTTCANGGNCTTGNNCGCGCGGGGTTGCCCTGCAGG
TCCNGGCTCAACGTANGAGACGCGGNCAGCCGCGTCAGTCAGGATCAAAT
AANGCGTGTTTTCATCCAGCAGCCTGC
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