EY728279

Overview
NameEY728279
Unique NameEY728279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_BURS3 (Aspartate carbamoyltransferase OS=Burkholderia sp. (strain 383) GN=pyrB PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 7.982e-24
Identity = 53/81 (65.43%), Postives = 66/81 (81.48%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H LS++GLPR ++  ILDTA+ F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA RLSADV+ LN
Sbjct:   31 QLTKNGELKHLLSIEGLPRSIVNHILDTAEQFVSVTDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAATRLSADVLNLN 111          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_BURPP (Aspartate carbamoyltransferase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=pyrB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.982e-24
Identity = 53/81 (65.43%), Postives = 66/81 (81.48%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H LS++GLP+ ++  ILDTAD F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA RLSADV+ LN
Sbjct:   29 QLTKNGELKHLLSIEGLPKAIVNHILDTADQFVSVTDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAATRLSADVLNLN 109          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_BURM1 (Aspartate carbamoyltransferase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=pyrB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.982e-24
Identity = 53/81 (65.43%), Postives = 66/81 (81.48%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H LS++GLPR ++  ILDTA+ F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA RLSADV+ LN
Sbjct:   31 QLTKNGELKHLLSIEGLPRSIVNHILDTAEQFVSVTDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAATRLSADVLNLN 111          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_BURCM (Aspartate carbamoyltransferase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=pyrB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.982e-24
Identity = 53/81 (65.43%), Postives = 66/81 (81.48%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H LS++GLPR ++  ILDTA+ F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA RLSADV+ LN
Sbjct:   31 QLTKNGELKHLLSIEGLPRSIVNHILDTAEQFVSVTDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAATRLSADVLNLN 111          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_BURCJ (Aspartate carbamoyltransferase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=pyrB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.982e-24
Identity = 53/81 (65.43%), Postives = 66/81 (81.48%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H LS++GLPR ++  ILDTA+ F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA RLSADV+ LN
Sbjct:   31 QLTKNGELKHLLSIEGLPRSIVNHILDTAEQFVSVTDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAATRLSADVLNLN 111          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_BURCH (Aspartate carbamoyltransferase OS=Burkholderia cenocepacia (strain HI2424) GN=pyrB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.982e-24
Identity = 53/81 (65.43%), Postives = 66/81 (81.48%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H LS++GLPR ++  ILDTA+ F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA RLSADV+ LN
Sbjct:   31 QLTKNGELKHLLSIEGLPRSIVNHILDTAEQFVSVTDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAATRLSADVLNLN 111          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_BURCC (Aspartate carbamoyltransferase OS=Burkholderia cenocepacia (strain MC0-3) GN=pyrB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.982e-24
Identity = 53/81 (65.43%), Postives = 66/81 (81.48%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H LS++GLPR ++  ILDTA+ F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA RLSADV+ LN
Sbjct:   31 QLTKNGELKHLLSIEGLPRSIVNHILDTAEQFVSVTDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAATRLSADVLNLN 111          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_BURCA (Aspartate carbamoyltransferase OS=Burkholderia cenocepacia (strain AU 1054) GN=pyrB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.982e-24
Identity = 53/81 (65.43%), Postives = 66/81 (81.48%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H LS++GLPR ++  ILDTA+ F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA RLSADV+ LN
Sbjct:   31 QLTKNGELKHLLSIEGLPRSIVNHILDTAEQFVSVTDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAATRLSADVLNLN 111          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_BURA4 (Aspartate carbamoyltransferase OS=Burkholderia ambifaria (strain MC40-6) GN=pyrB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.982e-24
Identity = 53/81 (65.43%), Postives = 66/81 (81.48%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H LS++GLPR ++  ILDTA+ F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA RLSADV+ LN
Sbjct:   31 QLTKNGELKHLLSIEGLPRSIVNHILDTAEQFVSVTDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAATRLSADVLNLN 111          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRR_LACSS (Bifunctional protein pyrR OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=pyrR PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.778e-23
Identity = 56/139 (40.29%), Postives = 90/139 (64.75%), Query Frame = -2
Query:  345 EHRAISEPRFIGIRTGGVWVAQALLEEL----GSDSPLGTLDVSFYRDDFSQNGLH--PQVRPSALPFEIEGQHLVLIDDVLMSGRTIRAAMNELFDYGRPASVTLVCLLDLDAGELPISPDVVGATLSLEAHQRVKLS 743
            +++ IS+  F+GI+T GV++A+ + + L    G   P+GTLD++ YRDD      H  PQ+  + +P +I  +H++LIDDVL +GRTIRAA++ L D GRP  ++L  L+D    ELPI PD VG  +    ++++K++
Sbjct:   25 QNKGISDLVFVGIKTRGVFIAERIAKRLEQLEGVTVPVGTLDITLYRDDQHDLNSHNEPQLNGNDIPVDITDKHVILIDDVLYTGRTIRAALDALMDLGRPKKISLAVLVDRGHRELPIRPDFVGKNIPTALNEQIKVA 163          
The following BLAST results are available for this feature:
BLAST of EY728279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 399
Match NameE-valueIdentityDescription
PYRB_BURS37.982e-2465.43Aspartate carbamoyltransferase OS=Burkholderia sp.... [more]
PYRB_BURPP7.982e-2465.43Aspartate carbamoyltransferase OS=Burkholderia phy... [more]
PYRB_BURM17.982e-2465.43Aspartate carbamoyltransferase OS=Burkholderia mul... [more]
PYRB_BURCM7.982e-2465.43Aspartate carbamoyltransferase OS=Burkholderia amb... [more]
PYRB_BURCJ7.982e-2465.43Aspartate carbamoyltransferase OS=Burkholderia cep... [more]
PYRB_BURCH7.982e-2465.43Aspartate carbamoyltransferase OS=Burkholderia cen... [more]
PYRB_BURCC7.982e-2465.43Aspartate carbamoyltransferase OS=Burkholderia cen... [more]
PYRB_BURCA7.982e-2465.43Aspartate carbamoyltransferase OS=Burkholderia cen... [more]
PYRB_BURA47.982e-2465.43Aspartate carbamoyltransferase OS=Burkholderia amb... [more]
PYRR_LACSS1.778e-2340.29Bifunctional protein pyrR OS=Lactobacillus sakei s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-G06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728279 ID=EY728279; Name=EY728279; organism=Citrus sinensis; type=EST; length=927bp
ACGTTCAGCGTGATCACGTCAGCCGACAGGCGCTGGGCCGCCAGCTCAAA
GGTGGTACGGGTGCGGGTCGAGTTCTCGAAGAACACGTTGCAGATGGTCT
TGCCGCGCAACAGCGGGACTTTTTTCACCGCCCGACCGCCGACTTCGAGG
AACGAGTCGGCCGTGTCGAGGATTTCGGTGAGCAGTTCGCGGGGCAAGCC
GTCGAGGGACAGGAAGTGTTGCAGCTGGCCCTGAGCATTGAGCTGCAGCG
GGCGCTTGGCATCTAGAGGCGTCATCGCGGGGACTCTTTACAAGGCGGTT
TAAAGGGCAAGGTCTTGCAGTTCGAGTTCGAGCGGCGTGGGACCGGACAA
TTTTACCCGCTGGTGGGCTTCCAGGGACAGGGTGGCGCCGACGACGTCCG
GGCTGATCGGCAATTCGCCGGCATCCAGGTCCAGCAGGCAGACCAGCGTC
ACGCTGGCCGGGCGGCCGTAGTCGAACAGCTCGTTCATGGCGGCGCGGAT
GGTGCGACCGCTCATCAGGACGTCATCGATCAGCACCAGGTGCTGGCCTT
CGATCTCGAACGGCAGGGCCGAAGGACGCACTTGCGGGTGCAGGCCGTTC
TGGCTGAAGTCGTCGCGGTAGAAGGACACGTCCAGGGTGCCGAGGGGCGA
GTCGCTGCCCAGTTCTTCCAAGAGCGCCTGGGCCACCCACACGCCACCGG
TACGAATGCCGATAAAACGCGGCTCGCTGATGGCGCGGTGTTCCAGGTGC
GCCTTGAGGCNGGATCGCATCTGGCTGATCANGNNTCGCGGATTGGGCAN
GCTCATGGTGGCTCCTTCANGGNCTTGNNCGCGCGGGGTTGCCCTGCAGG
TCCNGGCTCAACGTANGAGACGCGGNCAGCCGCGTCAGTCAGGATCAAAT
AANGCGTGTTTTCATCCAGCAGCCTGC
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