EY728279

Overview
NameEY728279
Unique NameEY728279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_DELAS (Aspartate carbamoyltransferase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=pyrB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.778e-23
Identity = 55/85 (64.71%), Postives = 68/85 (80.00%), Query Frame = -2
Query:    3 KRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 257
            KR  QLN  G+L H LS +GL +++LT ILDTA +F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA+RLSADV  L+
Sbjct:    4 KRNPQLNKNGELIHLLSTEGLSKDILTHILDTAANFVSVNDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVFNLD 88          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_POLNA (Aspartate carbamoyltransferase OS=Polaromonas naphthalenivorans (strain CJ2) GN=pyrB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.323e-23
Identity = 55/85 (64.71%), Postives = 68/85 (80.00%), Query Frame = -2
Query:    3 KRPLQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 257
            +R  QLN  G+L H LS +GL + +LT+ILDTA +F+ V  R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA RLSADVI L+
Sbjct:    4 RRNPQLNKNGELIHLLSTEGLSKAILTQILDTAANFVSVSSREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAATRLSADVINLD 88          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_NITMU (Aspartate carbamoyltransferase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=pyrB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.033e-23
Identity = 56/81 (69.14%), Postives = 65/81 (80.25%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QLN  GQLQH L+ +GLP  +L  ILDTA+ F+ V  R VKKVPLLRGK+I N+FFE STRTRTTFE+AA+RLSADVI LN
Sbjct:    6 QLNKSGQLQHLLTTEGLPASILLNILDTAEPFVGVTERDVKKVPLLRGKSIFNLFFEPSTRTRTTFEIAAKRLSADVINLN 86          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_RALPJ (Aspartate carbamoyltransferase OS=Ralstonia pickettii (strain 12J) GN=pyrB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.962e-23
Identity = 54/83 (65.06%), Postives = 68/83 (81.93%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGG--RAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H LS++GL R++LT++LDTA  F+ V    R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA+RLSADVI LN
Sbjct:    9 QLTKNGELKHLLSIEGLSRDILTDVLDTAQQFVSVSDSDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVINLN 91          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_RALSO (Aspartate carbamoyltransferase OS=Ralstonia solanacearum GN=pyrB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.758e-23
Identity = 55/83 (66.27%), Postives = 67/83 (80.72%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGG--RAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H LS++GL R++LT ILDTA  F+ V    R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA+RLSADVI LN
Sbjct:    9 QLTKNGELKHLLSIEGLSRDILTHILDTAKQFVSVSDADREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVINLN 91          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRR_GEOSM (Bifunctional protein pyrR OS=Geobacter sp. (strain M21) GN=pyrR PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.826e-23
Identity = 56/124 (45.16%), Postives = 78/124 (62.90%), Query Frame = -2
Query:  354 IGIRTGGVWVAQALLEEL----GSDSPLGTLDVSFYRDDFSQNGLHPQVRPSALPFEIEGQHLVLIDDVLMSGRTIRAAMNELFDYGRPASVTLVCLLDLDAGELPISPDVVGATLSLEAHQRV 713
            +GIRTGGV++AQ L E L    G + P G +D++ YRDD   +  H  V  + LPF IEG+ +VL+DDVL +GRTIRAA++ L D GRP+S+ L  L+D    +LPI  D VG  +     + +
Sbjct:   37 VGIRTGGVFLAQELAERLVEIEGVEVPCGAVDITMYRDDIKGHTEHLPVGKTELPFSIEGKKVVLVDDVLFTGRTIRAALDALMDQGRPSSIQLAVLVDRGHRDLPIRADFVGRNVPTSRSENI 160          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRR1_LACPL (Bifunctional protein pyrR 1 OS=Lactobacillus plantarum GN=pyrR1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.826e-23
Identity = 53/139 (38.13%), Postives = 89/139 (64.03%), Query Frame = -2
Query:  345 EHRAISEPRFIGIRTGGVWVAQALLEEL----GSDSPLGTLDVSFYRDDFSQNGLHPQVRPSA--LPFEIEGQHLVLIDDVLMSGRTIRAAMNELFDYGRPASVTLVCLLDLDAGELPISPDVVGATLSLEAHQRVKLS 743
            +++ +    FIGI+T G+++AQ L + L    G D P+G+LD++ YRDD     +  Q + +   +P +I G+H++L+DDVL +GRT+RAA++ L D+GRPA ++L  L+D    ELPI PD +G  +     ++V ++
Sbjct:   25 QNKGVGNLVFIGIKTRGIFLAQRLAQRLKQLEGVDVPVGSLDITLYRDDHHAVDVAGQAKLNGADIPVDINGKHVILVDDVLFTGRTVRAALDALMDHGRPAKISLAVLVDRGHRELPIRPDFIGKNIPTALDEQVSVA 163          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_NITEU (Aspartate carbamoyltransferase OS=Nitrosomonas europaea GN=pyrB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.826e-23
Identity = 54/81 (66.67%), Postives = 65/81 (80.25%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QLN  G+LQH L+ +GLP  +L  ILDTA+SF  V  R VKK+PLLRGK++ N+FFE STRTRTTFE+AA+RLSADVI LN
Sbjct:    6 QLNKNGELQHLLTTEGLPAVILRHILDTAESFTGVTERDVKKIPLLRGKSVFNLFFEPSTRTRTTFEIAAKRLSADVINLN 86          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRR_GEOBB (Bifunctional protein pyrR OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=pyrR PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.153e-22
Identity = 60/140 (42.86%), Postives = 84/140 (60.00%), Query Frame = -2
Query:  315 IGIRTGGVWVAQALLEEL----GSDSPLGTLDVSFYRDDFSQNGLHPQVRPSALPFEIEGQHLVLIDDVLMSGRTIRAAMNELFDYGRPASVTLVCLLDLDAGELPISPDVVGATLSLEAHQRVKL---SGPTPLELELQ 713
            +GIRTGGV++AQ L E L    G + P G +D++ YRDD   +  H  V  + LPF IEG+ +VL+DDVL +GRTIRAAM+ L D GR + + L  L+D    +LPI  D VG  +     + + +   +G  P E+ LQ
Sbjct:   37 VGIRTGGVFLAQELAERLVEIEGVEVPCGAVDITMYRDDIKGHAEHLPVGKTELPFSIEGKKVVLVDDVLFTGRTIRAAMDALMDQGRASCIQLAVLVDRGHRDLPIRADFVGRNVPTSRSENIVVAFDAGNKPTEVILQ 176          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRR_AKKM8 (Bifunctional protein pyrR OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=pyrR PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.153e-22
Identity = 53/115 (46.09%), Postives = 75/115 (65.22%), Query Frame = -2
Query:  378 IGIRTGGVWVAQALLE---ELGSDSPLGTLDVSFYRDDFSQNGLHPQVRPSALPFEIEGQHLVLIDDVLMSGRTIRAAMNELFDYGRPASVTLVCLLDLDAGELPISPDVVGATL 713
            +G+ + G  +A+ L++   ELG ++  G++D+S YRDD  +    P +R S LPF  +   +VL+DDVL +GRTIRAA+N LFDYGRPA + L CL+D    E+PI PD  G  L
Sbjct:   38 VGLLSQGDVIARRLVDKVKELGVEAQYGSIDISLYRDDIFKLEARPSLRSSNLPFSTDDMRVVLVDDVLYTGRTIRAALNALFDYGRPARIELACLIDRGGREVPIQPDYTGHVL 152          
The following BLAST results are available for this feature:
BLAST of EY728279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 399
Match NameE-valueIdentityDescription
PYRB_DELAS1.778e-2364.71Aspartate carbamoyltransferase OS=Delftia acidovor... [more]
PYRB_POLNA2.323e-2364.71Aspartate carbamoyltransferase OS=Polaromonas naph... [more]
PYRB_NITMU3.033e-2369.14Aspartate carbamoyltransferase OS=Nitrosospira mul... [more]
PYRB_RALPJ3.962e-2365.06Aspartate carbamoyltransferase OS=Ralstonia picket... [more]
PYRB_RALSO6.758e-2366.27Aspartate carbamoyltransferase OS=Ralstonia solana... [more]
PYRR_GEOSM8.826e-2345.16Bifunctional protein pyrR OS=Geobacter sp. (strain... [more]
PYRR1_LACPL8.826e-2338.13Bifunctional protein pyrR 1 OS=Lactobacillus plant... [more]
PYRB_NITEU8.826e-2366.67Aspartate carbamoyltransferase OS=Nitrosomonas eur... [more]
PYRR_GEOBB1.153e-2242.86Bifunctional protein pyrR OS=Geobacter bemidjiensi... [more]
PYRR_AKKM81.153e-2246.09Bifunctional protein pyrR OS=Akkermansia muciniphi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-G06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728279 ID=EY728279; Name=EY728279; organism=Citrus sinensis; type=EST; length=927bp
ACGTTCAGCGTGATCACGTCAGCCGACAGGCGCTGGGCCGCCAGCTCAAA
GGTGGTACGGGTGCGGGTCGAGTTCTCGAAGAACACGTTGCAGATGGTCT
TGCCGCGCAACAGCGGGACTTTTTTCACCGCCCGACCGCCGACTTCGAGG
AACGAGTCGGCCGTGTCGAGGATTTCGGTGAGCAGTTCGCGGGGCAAGCC
GTCGAGGGACAGGAAGTGTTGCAGCTGGCCCTGAGCATTGAGCTGCAGCG
GGCGCTTGGCATCTAGAGGCGTCATCGCGGGGACTCTTTACAAGGCGGTT
TAAAGGGCAAGGTCTTGCAGTTCGAGTTCGAGCGGCGTGGGACCGGACAA
TTTTACCCGCTGGTGGGCTTCCAGGGACAGGGTGGCGCCGACGACGTCCG
GGCTGATCGGCAATTCGCCGGCATCCAGGTCCAGCAGGCAGACCAGCGTC
ACGCTGGCCGGGCGGCCGTAGTCGAACAGCTCGTTCATGGCGGCGCGGAT
GGTGCGACCGCTCATCAGGACGTCATCGATCAGCACCAGGTGCTGGCCTT
CGATCTCGAACGGCAGGGCCGAAGGACGCACTTGCGGGTGCAGGCCGTTC
TGGCTGAAGTCGTCGCGGTAGAAGGACACGTCCAGGGTGCCGAGGGGCGA
GTCGCTGCCCAGTTCTTCCAAGAGCGCCTGGGCCACCCACACGCCACCGG
TACGAATGCCGATAAAACGCGGCTCGCTGATGGCGCGGTGTTCCAGGTGC
GCCTTGAGGCNGGATCGCATCTGGCTGATCANGNNTCGCGGATTGGGCAN
GCTCATGGTGGCTCCTTCANGGNCTTGNNCGCGCGGGGTTGCCCTGCAGG
TCCNGGCTCAACGTANGAGACGCGGNCAGCCGCGTCAGTCAGGATCAAAT
AANGCGTGTTTTCATCCAGCAGCCTGC
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