EY728279

Overview
NameEY728279
Unique NameEY728279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_ACIF5 (Aspartate carbamoyltransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=pyrB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.505e-22
Identity = 52/81 (64.20%), Postives = 66/81 (81.48%), Query Frame = -2
Query:    6 LQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITL 248
            LQ +AQG+L+H LS +GL    L +ILDTA+SFL +  R+VKK P LRG+TI N+FFENSTRTR+TFELAA+RLSADV+ +
Sbjct:   12 LQYDAQGRLRHLLSTEGLRERELLQILDTAESFLSIANRSVKKTPTLRGRTIANLFFENSTRTRSTFELAAKRLSADVLNI 92          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_ACIF2 (Aspartate carbamoyltransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=pyrB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.505e-22
Identity = 52/81 (64.20%), Postives = 66/81 (81.48%), Query Frame = -2
Query:    6 LQLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITL 248
            LQ +AQG+L+H LS +GL    L +ILDTA+SFL +  R+VKK P LRG+TI N+FFENSTRTR+TFELAA+RLSADV+ +
Sbjct:   12 LQYDAQGRLRHLLSTEGLRERELLQILDTAESFLSIANRSVKKTPTLRGRTIANLFFENSTRTRSTFELAAKRLSADVLNI 92          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRR_GEOSL (Bifunctional protein pyrR OS=Geobacter sulfurreducens GN=pyrR PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.354e-22
Identity = 59/140 (42.14%), Postives = 88/140 (62.86%), Query Frame = -2
Query:  321 IGIRTGGVWVAQ---ALLEEL-GSDSPLGTLDVSFYRDDFSQNGLHPQVRPSALPFEIEGQHLVLIDDVLMSGRTIRAAMNELFDYGRPASVTLVCLLDLDAGELPISPDVVGATLSLEAHQRVKL-----SGPTPLELE 713
            +GIRTGGV +A+   A LEE+ G+  P+G +D++ YRDDF  +  H  V  + +PF +E + +VL+DDVL +GRTIRAAM+ + D+GRPA + L  L+D    ELPI  D VG  +     +++ +     + PT + LE
Sbjct:   37 VGIRTGGVHLAREIVARLEEIEGATVPVGEVDITLYRDDFKGHAPHLPVGKTDIPFSLETKRVVLVDDVLFTGRTIRAAMDAIMDHGRPACIQLAVLVDRGHRELPIRADFVGRNVPTSLKEKIAVLFDAANRPTDVVLE 176          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_RALME (Aspartate carbamoyltransferase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=pyrB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.354e-22
Identity = 52/83 (62.65%), Postives = 67/83 (80.72%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGG--RAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H LS++GL R+++T ILDTA  F+ +    R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA+RLSADV+ LN
Sbjct:    9 QLTKNGELKHLLSIEGLSRDMITHILDTASQFVSLSDSDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVLNLN 91          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_POLSQ (Aspartate carbamoyltransferase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=pyrB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.354e-22
Identity = 54/83 (65.06%), Postives = 66/83 (79.52%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVG--GRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            Q NA G+L H L+L+GLP+E +  ILDTA  F+ V    R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA+RLSADVI L+
Sbjct:   14 QFNAAGELTHLLTLEGLPKEQILHILDTAQQFVSVTDPSREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVINLD 96          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRR_LISW6 (Bifunctional protein pyrR OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=pyrR PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.380e-22
Identity = 56/129 (43.41%), Postives = 82/129 (63.57%), Query Frame = -2
Query:  348 IGIRTGGVWVAQAL----LEELGSDSPLGTLDVSFYRDDFS---QNGLHPQVRPSALPFEIEGQHLVLIDDVLMSGRTIRAAMNELFDYGRPASVTLVCLLDLDAGELPISPDVVGATLSLEAHQRVKL 713
            +GI+T G+++A+ L    LE  G D P+G +D++ YRDD S    +   P V  + +PF+I G+ +VL+DDVL +GRT+RAAM+ L D GRPA + L  L D    ELPI  D VG  +   A++RV++
Sbjct:   37 VGIKTRGIYLAERLHTRILEIEGMDVPVGDIDITLYRDDLSYKDDDTREPAVHGTNIPFDINGKKVVLVDDVLYTGRTVRAAMDALMDVGRPAQIHLAVLADRGHRELPIRADYVGKNIPTSANERVEV 165          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_RALEJ (Aspartate carbamoyltransferase OS=Ralstonia eutropha (strain JMP134) GN=pyrB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.380e-22
Identity = 52/83 (62.65%), Postives = 67/83 (80.72%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGG--RAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H LS++GL R+++T ILDTA  F+ +    R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA+RLSADV+ LN
Sbjct:    9 QLTKNGELKHLLSIEGLSRDMITHILDTASQFVSLSDSDRDVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVLNLN 91          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_RALEH (Aspartate carbamoyltransferase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=pyrB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.380e-22
Identity = 52/83 (62.65%), Postives = 67/83 (80.72%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGG--RAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H LS++GL R+++T ILDTA  F+ +    R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA+RLSADV+ LN
Sbjct:    9 QLTKNGELKHLLSIEGLSRDMITHILDTASQFVSLSDSDRDVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVLNLN 91          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_NITEC (Aspartate carbamoyltransferase OS=Nitrosomonas eutropha (strain C91) GN=pyrB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.380e-22
Identity = 53/81 (65.43%), Postives = 65/81 (80.25%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGGRAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QLN  G+LQH L+ +GLP  +L  ILDTA+SF  V  R VKK+PLLRGK++ N+FFE STRTRTTFE+AA+RLSADVI L+
Sbjct:    6 QLNKNGELQHLLTTEGLPVTILRHILDTAESFTGVTERDVKKIPLLRGKSVFNLFFEPSTRTRTTFEIAAKRLSADVINLS 86          
BLAST of EY728279 vs. ExPASy Swiss-Prot
Match: PYRB_CUPTR (Aspartate carbamoyltransferase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=pyrB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.380e-22
Identity = 52/83 (62.65%), Postives = 67/83 (80.72%), Query Frame = -2
Query:    3 QLNAQGQLQHFLSLDGLPRELLTEILDTADSFLEVGG--RAVKKVPLLRGKTICNVFFENSTRTRTTFELAAQRLSADVITLN 245
            QL   G+L+H LS++GL R+++T ILDTA  F+ +    R VKKVPLLRGK++ N+FFENSTRTRTTFE+AA+RLSADV+ LN
Sbjct:    9 QLTKNGELKHLLSIEGLSRDMITHILDTASQFVSLSDSDRDVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVLNLN 91          
The following BLAST results are available for this feature:
BLAST of EY728279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 399
Match NameE-valueIdentityDescription
PYRB_ACIF51.505e-2264.20Aspartate carbamoyltransferase OS=Acidithiobacillu... [more]
PYRB_ACIF21.505e-2264.20Aspartate carbamoyltransferase OS=Acidithiobacillu... [more]
PYRR_GEOSL3.354e-2242.14Bifunctional protein pyrR OS=Geobacter sulfurreduc... [more]
PYRB_RALME3.354e-2262.65Aspartate carbamoyltransferase OS=Ralstonia metall... [more]
PYRB_POLSQ3.354e-2265.06Aspartate carbamoyltransferase OS=Polynucleobacter... [more]
PYRR_LISW64.380e-2243.41Bifunctional protein pyrR OS=Listeria welshimeri s... [more]
PYRB_RALEJ4.380e-2262.65Aspartate carbamoyltransferase OS=Ralstonia eutrop... [more]
PYRB_RALEH4.380e-2262.65Aspartate carbamoyltransferase OS=Ralstonia eutrop... [more]
PYRB_NITEC4.380e-2265.43Aspartate carbamoyltransferase OS=Nitrosomonas eut... [more]
PYRB_CUPTR4.380e-2262.65Aspartate carbamoyltransferase OS=Cupriavidus taiw... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-G06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728279 ID=EY728279; Name=EY728279; organism=Citrus sinensis; type=EST; length=927bp
ACGTTCAGCGTGATCACGTCAGCCGACAGGCGCTGGGCCGCCAGCTCAAA
GGTGGTACGGGTGCGGGTCGAGTTCTCGAAGAACACGTTGCAGATGGTCT
TGCCGCGCAACAGCGGGACTTTTTTCACCGCCCGACCGCCGACTTCGAGG
AACGAGTCGGCCGTGTCGAGGATTTCGGTGAGCAGTTCGCGGGGCAAGCC
GTCGAGGGACAGGAAGTGTTGCAGCTGGCCCTGAGCATTGAGCTGCAGCG
GGCGCTTGGCATCTAGAGGCGTCATCGCGGGGACTCTTTACAAGGCGGTT
TAAAGGGCAAGGTCTTGCAGTTCGAGTTCGAGCGGCGTGGGACCGGACAA
TTTTACCCGCTGGTGGGCTTCCAGGGACAGGGTGGCGCCGACGACGTCCG
GGCTGATCGGCAATTCGCCGGCATCCAGGTCCAGCAGGCAGACCAGCGTC
ACGCTGGCCGGGCGGCCGTAGTCGAACAGCTCGTTCATGGCGGCGCGGAT
GGTGCGACCGCTCATCAGGACGTCATCGATCAGCACCAGGTGCTGGCCTT
CGATCTCGAACGGCAGGGCCGAAGGACGCACTTGCGGGTGCAGGCCGTTC
TGGCTGAAGTCGTCGCGGTAGAAGGACACGTCCAGGGTGCCGAGGGGCGA
GTCGCTGCCCAGTTCTTCCAAGAGCGCCTGGGCCACCCACACGCCACCGG
TACGAATGCCGATAAAACGCGGCTCGCTGATGGCGCGGTGTTCCAGGTGC
GCCTTGAGGCNGGATCGCATCTGGCTGATCANGNNTCGCGGATTGGGCAN
GCTCATGGTGGCTCCTTCANGGNCTTGNNCGCGCGGGGTTGCCCTGCAGG
TCCNGGCTCAACGTANGAGACGCGGNCAGCCGCGTCAGTCAGGATCAAAT
AANGCGTGTTTTCATCCAGCAGCCTGC
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