EY728275

Overview
NameEY728275
Unique NameEY728275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length937
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728275 vs. ExPASy Swiss-Prot
Match: KCAB1_HUMAN (Voltage-gated potassium channel subunit beta-1 OS=Homo sapiens GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.939e-30
Identity = 59/125 (47.20%), Postives = 92/125 (73.60%), Query Frame = 2
Query:   86 ETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGRKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASSKRLDMDYVDVIYCHRPDTSTPIEE 460
            ++G RVS L  G  V+FG Q+    A+ L+  + + G+N FD AEVYA G+AE I+G  I++ G +RS +V++TK++WGG+   ++GLSRKHI++G K S +RL ++YVDV++ +RPD++TP+EE
Sbjct:   96 KSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEE 220          
BLAST of EY728275 vs. ExPASy Swiss-Prot
Match: KCAB1_BOVIN (Voltage-gated potassium channel subunit beta-1 OS=Bos taurus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.939e-30
Identity = 59/125 (47.20%), Postives = 92/125 (73.60%), Query Frame = 2
Query:   86 ETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGRKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASSKRLDMDYVDVIYCHRPDTSTPIEE 460
            ++G RVS L  G  V+FG Q+    A+ L+  + + G+N FD AEVYA G+AE I+G  I++ G +RS +V++TK++WGG+   ++GLSRKHI++G K S +RL ++YVDV++ +RPD++TP+EE
Sbjct:   78 KSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEE 202          
BLAST of EY728275 vs. ExPASy Swiss-Prot
Match: KCAB1_CHICK (Voltage-gated potassium channel subunit beta-1 OS=Gallus gallus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.298e-29
Identity = 58/125 (46.40%), Postives = 92/125 (73.60%), Query Frame = 2
Query:   86 ETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGRKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASSKRLDMDYVDVIYCHRPDTSTPIEE 460
            ++G RVS L  G  V+FG Q+    A+ L+  + + G+N FD AEVYA G+AE I+G  +++ G +RS +V++TK++WGG+   ++GLSRKHI++G +AS +RL ++YVDV++ +RPD +TP+EE
Sbjct:   78 KSGLRVSCLGLGTWVTFGGQISDEVAEQLMTIAYESGVNLFDTAEVYAAGKAEVILGNILKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLRASLQRLQLEYVDVVFANRPDNNTPMEE 202          
BLAST of EY728275 vs. ExPASy Swiss-Prot
Match: KCAB3_RAT (Voltage-gated potassium channel subunit beta-3 OS=Rattus norvegicus GN=Kcnab3 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.892e-29
Identity = 59/125 (47.20%), Postives = 88/125 (70.40%), Query Frame = 2
Query:   86 ETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGRKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASSKRLDMDYVDVIYCHRPDTSTPIEE 460
            ++G RVS L  G  V+FG+Q+    A+ LL  + +HG+N FD AEVYA G+AE  +G  ++  G +RS  V++TKIFWGGQ   ++GLSRKHI++G + S  RL ++YVD+++ +R D S+P+EE
Sbjct:   85 KSGLRVSCLGLGTWVTFGSQISDETAEDLLTVAYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSYVITTKIFWGGQAETERGLSRKHIIEGLQGSLDRLQLEYVDIVFANRSDPSSPMEE 209          
BLAST of EY728275 vs. ExPASy Swiss-Prot
Match: KCAB3_XENLA (Voltage-gated potassium channel subunit beta-3 OS=Xenopus laevis GN=kcnab3 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.442e-29
Identity = 59/132 (44.70%), Postives = 93/132 (70.45%), Query Frame = 2
Query:   86 ETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGRKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASSKRLDMDYVDVIYCHRPDTSTPIEETENSKGF 481
            ++G RVS L  G  V+FG+Q+    A++L+  + +HG+N FD AEVYA GRAE  +G+ +++   +RS  VV+TKI+WGGQ   ++GLSRKHI++G + S +RL +DYVD+++ +R D ++P+EE   +  F
Sbjct:   78 KSGLRVSCLGLGTWVTFGSQISDEVAENLMTVAYEHGVNLFDTAEVYAAGRAERTLGKILKKKEWRRSSYVVTTKIYWGGQAETERGLSRKHIIEGLRGSLERLQLDYVDIVFANRMDPNSPMEEIVRAMTF 209          
BLAST of EY728275 vs. ExPASy Swiss-Prot
Match: KCAB_SCHPO (Putative voltage-gated potassium channel subunit beta OS=Schizosaccharomyces pombe GN=SPCC965.06 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.448e-28
Identity = 69/149 (46.31%), Postives = 96/149 (64.43%), Query Frame = 2
Query:   89 TGPRVSQLSYGA*VSFGNQ-LDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGRKRSDIVVSTKIFWGG--QGPNDKGLSRKHIVKGTKASSKRLDMDYVDVIYCHRPDTSTPIEET--------ENSKGFDRGITIW 502
            +G +VS  S G  +++GN+  DV   K+ L  + D GIN FD AE+Y+NG +E +MG+AI+ELG  RS+ V++TK+F+G   + PN  GLSRKHI++G  AS KRL + YVDVI  HRPD S P+EE         ++ K F  G + W
Sbjct:   21 SGLKVSAFSLGGWLTYGNEGYDVEHTKNCLKQAWDLGINTFDTAEIYSNGNSETVMGKAIKELGWDRSEYVITTKVFFGAGTKLPNTTGLSRKHIIEGLNASLKRLGLPYVDVIMAHRPDPSVPMEEVVRAFTQLIQDGKAFYWGTSEW 169          
BLAST of EY728275 vs. ExPASy Swiss-Prot
Match: KCAB3_HUMAN (Voltage-gated potassium channel subunit beta-3 OS=Homo sapiens GN=KCNAB3 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 2.448e-28
Identity = 57/125 (45.60%), Postives = 87/125 (69.60%), Query Frame = 2
Query:   86 ETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGRKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASSKRLDMDYVDVIYCHRPDTSTPIEE 460
            ++G RVS L  G  V+FG+Q+    A+ +L  + +HG+N FD AEVYA G+AE  +G  ++  G +RS  V++TKIFWGGQ   ++GLSRKHI++G + S +RL + YVD+++ +R D + P+EE
Sbjct:   85 KSGLRVSCLGLGTWVTFGSQISDETAEDVLTVAYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSYVITTKIFWGGQAETERGLSRKHIIEGLRGSLERLQLGYVDIVFANRSDPNCPMEE 209          
BLAST of EY728275 vs. ExPASy Swiss-Prot
Match: YAJO_ECOLI (Uncharacterized oxidoreductase yajO OS=Escherichia coli (strain K12) GN=yajO PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.539e-17
Identity = 55/134 (41.04%), Postives = 82/134 (61.19%), Query Frame = 2
Query:   86 ETGPRVSQLSYGA*VSFGNQ--------LDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGRKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASSKRLDMDYVDVIYCHRPDTSTPIEET 463
            +T  RVS+L  G  ++FG          L    ++ ++  + + GINFFD A  Y++G +EEI+G+A+R+  R R D+VV+TK+F    G   +GLSR  I++    S +RL MDYVD++  HR D +TPIEET
Sbjct:    8 KTDLRVSRLCLGC-MTFGEPDRGNHAWTLPEESSRPIIKRALEGGINFFDTANSYSDGSSEEIVGRALRDFAR-REDVVVATKVFHR-VGDLPEGLSRAQILRSIDDSLRRLGMDYVDILQIHRWDYNTPIEET 138          
BLAST of EY728275 vs. ExPASy Swiss-Prot
Match: YGHZ_ECOLI (Uncharacterized protein yghZ OS=Escherichia coli (strain K12) GN=yghZ PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.956e-13
Identity = 47/133 (35.34%), Postives = 75/133 (56.39%), Query Frame = 2
Query:   86 ETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYAN--GRAEEIMGQAIRE-LGRKRSDIVVSTKIFWG-GQGPNDKGLSRKHIVKGTKASSKRLDMDYVDVIYCHRPDTSTPIEETENS 472
            ++G R+  LS G   +FG+   +   +++L  + D GI  FD A  Y    G AEE  G+ +RE     R ++++STK  +    GP   G SRK+++     S KR+ ++YVD+ Y HR D +TP+EET ++
Sbjct:   20 KSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASA 152          
BLAST of EY728275 vs. ExPASy Swiss-Prot
Match: YGHZ_ECO57 (Uncharacterized protein yghZ OS=Escherichia coli O157:H7 GN=yghZ PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.956e-13
Identity = 47/133 (35.34%), Postives = 75/133 (56.39%), Query Frame = 2
Query:   86 ETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYAN--GRAEEIMGQAIRE-LGRKRSDIVVSTKIFWG-GQGPNDKGLSRKHIVKGTKASSKRLDMDYVDVIYCHRPDTSTPIEETENS 472
            ++G R+  LS G   +FG+   +   +++L  + D GI  FD A  Y    G AEE  G+ +RE     R ++++STK  +    GP   G SRK+++     S KR+ ++YVD+ Y HR D +TP+EET ++
Sbjct:   20 KSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASA 152          
The following BLAST results are available for this feature:
BLAST of EY728275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
KCAB1_HUMAN9.939e-3047.20Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_BOVIN9.939e-3047.20Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_CHICK1.298e-2946.40Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB3_RAT2.892e-2947.20Voltage-gated potassium channel subunit beta-3 OS=... [more]
KCAB3_XENLA6.442e-2944.70Voltage-gated potassium channel subunit beta-3 OS=... [more]
KCAB_SCHPO2.448e-2846.31Putative voltage-gated potassium channel subunit b... [more]
KCAB3_HUMAN2.448e-2845.60Voltage-gated potassium channel subunit beta-3 OS=... [more]
YAJO_ECOLI2.539e-1741.04Uncharacterized oxidoreductase yajO OS=Escherichia... [more]
YGHZ_ECOLI4.956e-1335.34Uncharacterized protein yghZ OS=Escherichia coli (... [more]
YGHZ_ECO574.956e-1335.34Uncharacterized protein yghZ OS=Escherichia coli O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-G01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728275 ID=EY728275; Name=EY728275; organism=Citrus sinensis; type=EST; length=937bp
CCACGCGTCCGCCAAAATCGATTCCCCCCTCTCTTTCTACTGAAACCCTA
AATCTAAAATCAGAGCCAAGGAAATATTGATTCAAGAAACGGGGCCGAGA
GTGAGCCAGCTCTCGTACGGAGCGTGAGTCAGCTTCGGGAACCAGCTGGA
CGTGACGGAGGCGAAGTCGCTCTTGCATTGCTCCCGCGACCACGGCATCA
ACTTCTTCGACAATGCCGAGGTCTACGCCAACGGCCGCGCGGAAGAGATC
ATGGGCCAGGCCATTCGTGAGCTCGGGCGGAAGCGATCCGACATCGTCGT
TTCCACCAAGATCTTTTGGGGCGGCCAGGGCCCCAACGATAAAGGCCTCT
CCAGAAAACACATCGTCAAGGGCACCAAAGCTTCCTCCAAACGCCTCGAC
ATGGACTACGTCGACGTTATTTATTGTCACAGGCCAGACACATCGACACC
GATAGAGGAGACGGAAAATTCCAAGGGATTTGACAGAGGCATCACTATCT
GGTGCAGGATAATCCATAATATCACCCCTTTCTATGTTGGTTTTATTTGG
AATGGGACTAAATAATTTATGTACAGTGGACCACCTCTACGGCGGGCTTT
GTCGACAACAAGTACTGATGGGGACTTCTTGGCTAATGATAATAAAAGAA
GTTTCCCCTCACTTTCATGGGAATTTGCATCAATTAAAGGGAGACGACTG
GTTGGGAAACTGAATCCTATTCTAGCTGTGAATTTTTATGCTCCCTGGGT
GCTACTGGAATAACACCCCTGAAACCATCGTGGGCACAAAGCACCGAACG
CATGGAGAGGGGTCTGCCCTCACTGGGAAGGACTAATTCTTTTAGGTAAA
ATTTGTTGGCCTGTAAAAACAGAATNTGGGAAGGGAGACACGAGAAACAG
GGGTACACTCATTGTCACTATCTGCGAAGGGAAAGCG
back to top