EY728239

Overview
NameEY728239
Unique NameEY728239
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA6_SCHPO (Probable proteasome subunit alpha type-6 OS=Schizosaccharomyces pombe GN=SPBC646.16 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.786e-30
Identity = 63/97 (64.95%), Postives = 77/97 (79.38%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRL+QVEYAFKA   AG+TS+GV GK+  CV++QKKVPDKL+D ++V H+FPITK +G + TG IADAR  V +AR EAAEF +K GY MP DVLAK
Sbjct:   18 GRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVKHVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAK 114          

HSP 2 Score: 81.6481 bits (200), Expect = 6.809e-15
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 1
Query:  493 RIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKR 690
            R+A+ +QV TQ A MRPLGV   ++++D+E GP LFK DPAG + G+KATSAG K+ E IN+LEKR
Sbjct:  115 RMANIAQVSTQRAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEKR 180          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA6_YEAST (Proteasome component C7-alpha OS=Saccharomyces cerevisiae GN=SCL1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.947e-26
Identity = 56/97 (57.73%), Postives = 74/97 (76.29%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRL+QVEYAFKA     + S+ VRGKD   V++QKKVPDKLLD T+V+++F I++ +G++  G I DAR    +A+ EAAEFR+KYGY+MP DVLAK
Sbjct:   23 GRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAK 119          

HSP 2 Score: 80.8777 bits (198), Expect = 1.161e-14
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 1
Query:  493 RIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLE 684
            R+A+ SQ+YTQ AYMRPLGV+   +S+DEE GP ++K DPAG++ G+KAT+ G K+QE    LE
Sbjct:  120 RMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLE 183          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA6_DICDI (Proteasome subunit alpha type-6 OS=Dictyostelium discoideum GN=psmA6 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.494e-25
Identity = 51/98 (52.04%), Postives = 75/98 (76.53%), Query Frame = 1
Query:   10 RGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            +G+L+Q+EYAFKA+K  G+TS+G+RGKD V V TQKK+PDKL+D  SVT L+ +T Y+G + TG++ D+++   +A  E A F  K+GY++P +VLAK
Sbjct:   18 QGKLYQIEYAFKAIKTGGLTSVGIRGKDCVVVATQKKIPDKLIDPKSVTSLYKLTDYIGCVQTGIVPDSKSQASRAIQECATFHHKFGYQIPPNVLAK 115          

HSP 2 Score: 86.2705 bits (212), Expect = 2.764e-16
Identity = 41/66 (62.12%), Postives = 53/66 (80.30%), Query Frame = 1
Query:  493 RIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKR 690
            R+AD +Q+ TQHA  RPLGV  +++ ID+E GP+LFK DPAG F G+KAT+AG KEQE+ NFLEK+
Sbjct:  116 RMADIAQLSTQHASARPLGVAMILIGIDDELGPQLFKVDPAGVFTGYKATAAGEKEQESTNFLEKK 181          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA6_CAEEL (Proteasome subunit alpha type-6 OS=Caenorhabditis elegans GN=pas-1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.951e-19
Identity = 42/97 (43.30%), Postives = 71/97 (73.20%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GR++QVEYAFKA+ +  +T++ V+G D+  +  QK+VPD L+   +VT ++ I++ +G  A GMI DA+  +++A+ EAA +++K GY+MP ++LAK
Sbjct:   20 GRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVTSVYQISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAK 116          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBB (Proteasome subunit alpha type-1 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.951e-19
Identity = 47/97 (48.45%), Postives = 66/97 (68.04%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            G L+QVEYAFKAV  AG+ ++ +R KD+V V TQ  VPDKL+   ++T L+ +    G+  TG   D + LVQ+AR EA+E++++YG  M V VLAK
Sbjct:   17 GSLYQVEYAFKAVTYAGLLTVAIRCKDAVLVFTQHSVPDKLMRPETITSLYNVNDNTGVCITGRAPDGKALVQKARNEASEYKYRYGMPMLVSVLAK 113          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA5_ORYSJ (Proteasome subunit alpha type-5 OS=Oryza sativa subsp. japonica GN=PAE1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.158e-16
Identity = 44/93 (47.31%), Postives = 62/93 (66.67%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVD 291
            GRLFQVEYA +A+K  G T+IG++ KD V +  +K+V   LL+ +SV  +  I +++G   +G+IADARTLV+ AR E    RF YG  M V+
Sbjct:   19 GRLFQVEYAIEAIKL-GSTAIGLKTKDGVVLAVEKRVTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVE 110          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.050e-15
Identity = 42/97 (43.30%), Postives = 65/97 (67.01%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRLFQVEYA +AVK  G T++G++ ++ V +   K+V  KL++  S+  ++ I  ++G    G++ADAR LV++AR EA  +R+ YG  + VDVL K
Sbjct:   21 GRLFQVEYAREAVKR-GTTALGIKVEEGVVLGVDKRVTSKLIEPESIEKVYQIDTHIGAATAGLVADARVLVERARIEAQTYRYTYGEPIDVDVLVK 116          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSMA_THESM (Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=psmA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.372e-15
Identity = 44/97 (45.36%), Postives = 64/97 (65.98%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRLFQV+YA +AVK  G T++GV+ KD V +  +K+V  KL++  S   +F I  ++   ++G+IADAR LV +AR EA  +R  YG  +P+ VL K
Sbjct:   21 GRLFQVQYAREAVKR-GATAVGVKCKDGVVLAVEKRVTSKLIEPESYEKIFQIDDHIAAASSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVK 116          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA5_TRYBB (Proteasome subunit alpha type-5 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.372e-15
Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLA 300
            GR+FQ+EYA +A+K  G TS+G++  D+V +  +K+VP  L+D +SV  +  I  ++G + +GM+ADAR LV  AR EA   RF Y   M V+  A
Sbjct:   19 GRIFQIEYAIEAIKL-GSTSLGIQTPDAVIIAAEKRVPSTLVDPSSVNKILEIDHHIGTVLSGMVADARILVDHARVEAQNHRFTYDEPMSVESCA 113          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA5B_ARATH (Proteasome subunit alpha type-5-B OS=Arabidopsis thaliana GN=PAE2 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.792e-15
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVD 291
            GRLFQVEYA +A+K  G T+IGV+ K+ V +  +K++   LL+ +SV  +  I  ++G   +G+IADARTLV+ AR E    RF YG  M V+
Sbjct:   19 GRLFQVEYAIEAIKL-GSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVE 110          
The following BLAST results are available for this feature:
BLAST of EY728239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
PSA6_SCHPO9.786e-3064.95Probable proteasome subunit alpha type-6 OS=Schizo... [more]
PSA6_YEAST2.947e-2657.73Proteasome component C7-alpha OS=Saccharomyces cer... [more]
PSA6_DICDI2.494e-2552.04Proteasome subunit alpha type-6 OS=Dictyostelium d... [more]
PSA6_CAEEL5.951e-1943.30Proteasome subunit alpha type-6 OS=Caenorhabditis ... [more]
PSA1_TRYBB5.951e-1948.45Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSA5_ORYSJ6.158e-1647.31Proteasome subunit alpha type-5 OS=Oryza sativa su... [more]
PSMA_METKA1.050e-1543.30Proteasome subunit alpha OS=Methanopyrus kandleri ... [more]
PSMA_THESM1.372e-1545.36Proteasome subunit alpha OS=Thermococcus sibiricus... [more]
PSA5_TRYBB1.372e-1543.75Proteasome subunit alpha type-5 OS=Trypanosoma bru... [more]
PSA5B_ARATH1.792e-1546.24Proteasome subunit alpha type-5-B OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-C06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728239 ID=EY728239; Name=EY728239; organism=Citrus sinensis; type=EST; length=927bp
CCACGCGTCCGGGGTCGTCTCTTTCAAGTCGAGTATGCTTTCAAAGCTGT
TAAGGCTGCTGGGGTTACCTCTATCGGTGTTCGAGGAAAGGATTCAGTCT
GTGTTGTGACTCAGAAGAAGGTCCCGGACAAGCTTTTGGATCATACAAGT
GTCACACATCTTTTCCCAATCACAAAGTACCTTGGATTGCTGGCAACTGG
AATGATAGCTGATGCAAGGACATTGGTTCAGCAGGCAAGATATGAAGCCG
CTGAGTTTCGCTTCAAATATGGATATGAAATGCCTGTGGATGTGTTAGCC
AAATGGTAAGTTTTCATATCCTTTTAAGTTGAATTCTAGTTTGCTTGTTT
AGTATTCGATATTTTCTGCAAATTGTTGACCGAACATTGCCTTTTTCCTT
ACTCATTTTTTGTCACTTTACTGCTTAAGTTTTGGTTAAATGTTGCAGTA
CTACTATCTGAAAAACAGTTATGTTAATTTCCTTTCATGTACAGGATTGC
AGACAAATCACAAGTATATACTCAACATGCTTATATGAGACCACTTGGTG
TAGTTGCTATGGTTTTGAGTATTGACGAAGAATGTGGACCTCGCCTCTTT
AAGTGTGACCCTGCTGGCCATTTCTTTGGCCACAAGGCAACAAGTGCTGG
ATTGAAGGAGCAAGAGGCAATTAATTTCTTGGAGAAGAGATGAAGAATGA
TCCTGCGTTTACCTTTCAGAAACTGTGCAGACTGCAATTTCCCACCTGCA
TCAGTCCCTGCAGAGGATTTTAGGCNAGTGAAATTGANNGTTGCGTGNTG
AGCAAGGAGAATCCAGAATCAGAGTTTTGTCCATCGAGGAGATCGATGAG
CCTTGACTGCTATAGGTGACGAGATTAGGAGGTGGTTCACGCCCATCATA
ATGCTGAAACCAAAAACAAATGCTTTC
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