EY728239

Overview
NameEY728239
Unique NameEY728239
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAB (Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.528e-14
Identity = 41/97 (42.27%), Postives = 61/97 (62.89%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRLFQV YA +AVK  G T++GV+ KD V +  +K++  +L++  S   +F I  ++   ++G+IADAR LV +AR EA   R  YG   P+ V+ K
Sbjct:   21 GRLFQVNYAREAVKR-GATAVGVKCKDGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVK 116          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSMA_METMJ (Proteasome subunit alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=psmA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.528e-14
Identity = 38/97 (39.18%), Postives = 65/97 (67.01%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRL+QVEYA +AVK  G T++G++  + V ++  K+V  +LL+  S+  +F I  ++G+ ++G++ DAR+LV +AR E+   R  Y   + V++LAK
Sbjct:   20 GRLYQVEYAREAVKR-GTTAVGIKCSEGVVLIVDKRVTSRLLEPVSIEKIFKIDAHIGVASSGLVGDARSLVDRARVESQINRVSYNEPINVEILAK 115          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.528e-14
Identity = 39/97 (40.21%), Postives = 64/97 (65.98%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRLFQVEYA +AVK  G T++G++  D V ++  K++  +L++  S+  +F I  ++G   +G++ADAR+LV +AR EA   R  Y   + V+V++K
Sbjct:   20 GRLFQVEYAREAVK-RGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDELIGVEVISK 115          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSMA_METTE (Proteasome subunit alpha OS=Methanosarcina thermophila GN=psmA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.832e-14
Identity = 39/97 (40.21%), Postives = 63/97 (64.95%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRLFQVEYA +AVK  G T++G++  D V ++  K++  +L++  S+  +F I  ++G   +G++ADAR LV +AR EA   R  Y   + V+V++K
Sbjct:   18 GRLFQVEYAREAVK-RGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARALVDRARVEAQVNRVSYDELIGVEVISK 113          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSMA_METS3 (Proteasome subunit alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=psmA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.832e-14
Identity = 40/97 (41.24%), Postives = 62/97 (63.92%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRLFQVEYA +AVK  G TSIG++  + + +   K+    L++ TS+  +F I +++G   +G++ADAR LV++AR EA   +  Y   + VD L+K
Sbjct:   20 GRLFQVEYAREAVKR-GTTSIGIKCSEGIVLAVDKRTTSNLVEATSIEKIFKIDEHIGAATSGLVADARALVERARVEAQINKITYSEPIRVDSLSK 115          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSMA_PYRFU (Proteasome subunit alpha OS=Pyrococcus furiosus GN=psmA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.284e-13
Identity = 40/97 (41.24%), Postives = 61/97 (62.89%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRLFQV YA +AVK  G T++GV+  + V +  +K++  +L++  S   +F I  ++   ++G+IADAR LV +AR EA  +R  YG   PV V+ K
Sbjct:   21 GRLFQVNYAREAVKR-GATAVGVKCGEGVVLAVEKRITSRLIEPDSYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIYRLTYGEPAPVSVIVK 116          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSMA_METM6 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=psmA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.284e-13
Identity = 38/97 (39.18%), Postives = 62/97 (63.92%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRL+QVEYA +AV+  G T++G++  D V +   +++  KL+D +S+  +F I  ++    +G++ADAR L+ +AR EA   R  YG  + V+ LAK
Sbjct:   21 GRLYQVEYAREAVRR-GTTAVGIKCNDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAK 116          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA5_SCHPO (Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces pombe GN=SPAC323.02c PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.736e-13
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKY 270
            GRLFQVEYA +A+K  G T+IGV+ KD+V +  +K++   L++  SV  LF I  ++G   +G+ ADART+++ AR +    RF Y
Sbjct:   19 GRLFQVEYAIEAIKL-GSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTY 103          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA5_MOUSE (Proteasome subunit alpha type-5 OS=Mus musculus GN=Psma5 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.879e-13
Identity = 36/93 (38.71%), Postives = 59/93 (63.44%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVD 291
            GRLFQVEYA +A+K  G T+IG++  + VC+  +K++   L++ +S+  +  I  ++G   +G+IADA+TL+ +AR E     F Y   M V+
Sbjct:   19 GRLFQVEYAIEAIKL-GSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVE 110          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA5_HUMAN (Proteasome subunit alpha type-5 OS=Homo sapiens GN=PSMA5 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 4.879e-13
Identity = 36/93 (38.71%), Postives = 59/93 (63.44%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVD 291
            GRLFQVEYA +A+K  G T+IG++  + VC+  +K++   L++ +S+  +  I  ++G   +G+IADA+TL+ +AR E     F Y   M V+
Sbjct:   19 GRLFQVEYAIEAIKL-GSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVE 110          
The following BLAST results are available for this feature:
BLAST of EY728239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
PSMA_PYRAB7.528e-1442.27Proteasome subunit alpha OS=Pyrococcus abyssi GN=p... [more]
PSMA_METMJ7.528e-1439.18Proteasome subunit alpha OS=Methanoculleus marisni... [more]
PSMA_METMA7.528e-1440.21Proteasome subunit alpha OS=Methanosarcina mazei G... [more]
PSMA_METTE9.832e-1440.21Proteasome subunit alpha OS=Methanosarcina thermop... [more]
PSMA_METS39.832e-1441.24Proteasome subunit alpha OS=Methanobrevibacter smi... [more]
PSMA_PYRFU1.284e-1341.24Proteasome subunit alpha OS=Pyrococcus furiosus GN... [more]
PSMA_METM61.284e-1339.18Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSA5_SCHPO3.736e-1344.19Probable proteasome subunit alpha type-5 OS=Schizo... [more]
PSA5_MOUSE4.879e-1338.71Proteasome subunit alpha type-5 OS=Mus musculus GN... [more]
PSA5_HUMAN4.879e-1338.71Proteasome subunit alpha type-5 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-C06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728239 ID=EY728239; Name=EY728239; organism=Citrus sinensis; type=EST; length=927bp
CCACGCGTCCGGGGTCGTCTCTTTCAAGTCGAGTATGCTTTCAAAGCTGT
TAAGGCTGCTGGGGTTACCTCTATCGGTGTTCGAGGAAAGGATTCAGTCT
GTGTTGTGACTCAGAAGAAGGTCCCGGACAAGCTTTTGGATCATACAAGT
GTCACACATCTTTTCCCAATCACAAAGTACCTTGGATTGCTGGCAACTGG
AATGATAGCTGATGCAAGGACATTGGTTCAGCAGGCAAGATATGAAGCCG
CTGAGTTTCGCTTCAAATATGGATATGAAATGCCTGTGGATGTGTTAGCC
AAATGGTAAGTTTTCATATCCTTTTAAGTTGAATTCTAGTTTGCTTGTTT
AGTATTCGATATTTTCTGCAAATTGTTGACCGAACATTGCCTTTTTCCTT
ACTCATTTTTTGTCACTTTACTGCTTAAGTTTTGGTTAAATGTTGCAGTA
CTACTATCTGAAAAACAGTTATGTTAATTTCCTTTCATGTACAGGATTGC
AGACAAATCACAAGTATATACTCAACATGCTTATATGAGACCACTTGGTG
TAGTTGCTATGGTTTTGAGTATTGACGAAGAATGTGGACCTCGCCTCTTT
AAGTGTGACCCTGCTGGCCATTTCTTTGGCCACAAGGCAACAAGTGCTGG
ATTGAAGGAGCAAGAGGCAATTAATTTCTTGGAGAAGAGATGAAGAATGA
TCCTGCGTTTACCTTTCAGAAACTGTGCAGACTGCAATTTCCCACCTGCA
TCAGTCCCTGCAGAGGATTTTAGGCNAGTGAAATTGANNGTTGCGTGNTG
AGCAAGGAGAATCCAGAATCAGAGTTTTGTCCATCGAGGAGATCGATGAG
CCTTGACTGCTATAGGTGACGAGATTAGGAGGTGGTTCACGCCCATCATA
ATGCTGAAACCAAAAACAAATGCTTTC
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