EY728239

Overview
NameEY728239
Unique NameEY728239
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA5_BOVIN (Proteasome subunit alpha type-5 OS=Bos taurus GN=PSMA5 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.879e-13
Identity = 36/93 (38.71%), Postives = 59/93 (63.44%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVD 291
            GRLFQVEYA +A+K  G T+IG++  + VC+  +K++   L++ +S+  +  I  ++G   +G+IADA+TL+ +AR E     F Y   M V+
Sbjct:   19 GRLFQVEYAIEAIKL-GSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVE 110          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSMA_PYRHO (Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.323e-13
Identity = 39/97 (40.21%), Postives = 60/97 (61.86%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRLFQV YA +AVK  G T++GV+  + V +  +K++  +L++  S   +F I  ++   ++G+IADAR LV +AR EA   R  YG   P+ V+ K
Sbjct:   21 GRLFQVNYAREAVKR-GATAVGVKCNEGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVK 116          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSMA_ARCFU (Proteasome subunit alpha OS=Archaeoglobus fulgidus GN=psmA PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.323e-13
Identity = 40/97 (41.24%), Postives = 62/97 (63.92%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRLFQVEYA +AVK  G T+IG++ K+ V ++  K+V  KLL+  ++  ++ I +++    +G++ADAR L+ +AR EA   R  Y   + V  LAK
Sbjct:   19 GRLFQVEYAREAVKR-GATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAK 114          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA5_ENTHI (Proteasome subunit alpha type-5 OS=Entamoeba histolytica PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.087e-12
Identity = 39/97 (40.21%), Postives = 61/97 (62.89%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRLFQVEYA +A+K  G T IG++ K+ V +  +K++   L+  +S+  +  I  ++G   +G+ ADARTL+  AR EA   RF Y   + V+V+A+
Sbjct:   19 GRLFQVEYATEAMKL-GSTVIGIQTKEGVVLAVEKRISSPLMLGSSIEKIIEIDDHIGAAVSGLTADARTLIDNARLEAQNHRFMYDEPINVEVVAQ 114          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA5_CAEEL (Proteasome subunit alpha type-5 OS=Caenorhabditis elegans GN=pas-5 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.420e-12
Identity = 37/93 (39.78%), Postives = 62/93 (66.67%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVD 291
            GRLFQVEYA +AVK  G TSIG++  + V +  +K+   KL+ + ++  +  + +++G+   G+IAD+RTLV++A+ EA  F F Y  ++ V+
Sbjct:   19 GRLFQVEYAIEAVKL-GSTSIGIKTSEGVLLAAEKRSTSKLMVNDAIEKISKVDQHIGVTFAGLIADSRTLVERAQIEAQNFWFTYNRKIRVE 110          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA7_TRYBB (Proteasome subunit alpha type-7 OS=Trypanosoma brucei brucei GN=PSA4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.422e-12
Identity = 37/98 (37.76%), Postives = 60/98 (61.22%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAKW 306
            G LFQVEYA +AV+  G+ ++GV+GKDS+    +KK   KL D  +   ++ + +++ L + G+ ADAR +V  A+ E   FR  Y   + VD+L ++
Sbjct:   14 GHLFQVEYAQEAVRK-GLCAVGVKGKDSIIFAVEKKSVQKLQDSRTTRKIYKLDEHIYLASAGLSADARVVVNHAQLECQRFRLSYEDAIDVDLLVRY 110          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA3_DICDI (Proteasome subunit alpha type-3 OS=Dictyostelium discoideum GN=psmA3 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.163e-12
Identity = 38/97 (39.18%), Postives = 61/97 (62.89%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            G+LFQV+YA KAV+ +G T + ++ KD V +  +K VP K+L   S   +  I  ++G+   G +ADAR L+ +AR EA  ++  YG  +P+ VL++
Sbjct:   19 GKLFQVDYANKAVENSG-TLVAIKAKDGVVLGVEKLVPSKMLCSGSNRRVHHIDTHVGVAIAGFLADARQLITRARSEAKNYKSTYGQPIPIKVLSQ 114          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA5_RAT (Proteasome subunit alpha type-5 OS=Rattus norvegicus GN=Psma5 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.046e-12
Identity = 35/93 (37.63%), Postives = 57/93 (61.29%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVD 291
            GRLFQVEYA +  K  G T+IG++  + VC+  +K++   L++ +S+  +  I  ++G   +G+IADA+TL+ +AR E     F Y   M V+
Sbjct:   19 GRLFQVEYAIEGHKL-GSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVE 110          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSMA_NATPD (Proteasome subunit alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=psmA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.202e-12
Identity = 38/97 (39.18%), Postives = 59/97 (60.82%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRL+QVEYA +AVK  G  SIG+R +D V +V  K++   L++ TSV  +     ++G+ + G +ADAR L+  AR +A   + +Y   + V+ L K
Sbjct:   21 GRLYQVEYAREAVKR-GTASIGIRTEDGVVLVVDKRIRSPLMERTSVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYDEPIGVETLTK 116          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSMA_PICTO (Proteasome subunit alpha OS=Picrophilus torridus GN=psmA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11
Identity = 38/97 (39.18%), Postives = 62/97 (63.92%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRLFQVEYA +AVK  G T++G++ KD V ++++KKV  +L++ TS+  +  I   +  + +G++ADAR L+  AR    + +  YG  M ++ L K
Sbjct:   19 GRLFQVEYAREAVKK-GSTALGIKFKDGVALISEKKVRSRLVEKTSLEKIQLIDDRVAAVTSGLVADARVLIDFARISDQQEKVTYGSLMNIENLVK 114          
The following BLAST results are available for this feature:
BLAST of EY728239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
PSA5_BOVIN4.879e-1338.71Proteasome subunit alpha type-5 OS=Bos taurus GN=P... [more]
PSMA_PYRHO8.323e-1340.21Proteasome subunit alpha OS=Pyrococcus horikoshii ... [more]
PSMA_ARCFU8.323e-1341.24Proteasome subunit alpha OS=Archaeoglobus fulgidus... [more]
PSA5_ENTHI1.087e-1240.21Proteasome subunit alpha type-5 OS=Entamoeba histo... [more]
PSA5_CAEEL1.420e-1239.78Proteasome subunit alpha type-5 OS=Caenorhabditis ... [more]
PSA7_TRYBB2.422e-1237.76Proteasome subunit alpha type-7 OS=Trypanosoma bru... [more]
PSA3_DICDI3.163e-1239.18Proteasome subunit alpha type-3 OS=Dictyostelium d... [more]
PSA5_RAT7.046e-1237.63Proteasome subunit alpha type-5 OS=Rattus norvegic... [more]
PSMA_NATPD9.202e-1239.18Proteasome subunit alpha OS=Natronomonas pharaonis... [more]
PSMA_PICTO1.202e-1139.18Proteasome subunit alpha OS=Picrophilus torridus G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-C06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728239 ID=EY728239; Name=EY728239; organism=Citrus sinensis; type=EST; length=927bp
CCACGCGTCCGGGGTCGTCTCTTTCAAGTCGAGTATGCTTTCAAAGCTGT
TAAGGCTGCTGGGGTTACCTCTATCGGTGTTCGAGGAAAGGATTCAGTCT
GTGTTGTGACTCAGAAGAAGGTCCCGGACAAGCTTTTGGATCATACAAGT
GTCACACATCTTTTCCCAATCACAAAGTACCTTGGATTGCTGGCAACTGG
AATGATAGCTGATGCAAGGACATTGGTTCAGCAGGCAAGATATGAAGCCG
CTGAGTTTCGCTTCAAATATGGATATGAAATGCCTGTGGATGTGTTAGCC
AAATGGTAAGTTTTCATATCCTTTTAAGTTGAATTCTAGTTTGCTTGTTT
AGTATTCGATATTTTCTGCAAATTGTTGACCGAACATTGCCTTTTTCCTT
ACTCATTTTTTGTCACTTTACTGCTTAAGTTTTGGTTAAATGTTGCAGTA
CTACTATCTGAAAAACAGTTATGTTAATTTCCTTTCATGTACAGGATTGC
AGACAAATCACAAGTATATACTCAACATGCTTATATGAGACCACTTGGTG
TAGTTGCTATGGTTTTGAGTATTGACGAAGAATGTGGACCTCGCCTCTTT
AAGTGTGACCCTGCTGGCCATTTCTTTGGCCACAAGGCAACAAGTGCTGG
ATTGAAGGAGCAAGAGGCAATTAATTTCTTGGAGAAGAGATGAAGAATGA
TCCTGCGTTTACCTTTCAGAAACTGTGCAGACTGCAATTTCCCACCTGCA
TCAGTCCCTGCAGAGGATTTTAGGCNAGTGAAATTGANNGTTGCGTGNTG
AGCAAGGAGAATCCAGAATCAGAGTTTTGTCCATCGAGGAGATCGATGAG
CCTTGACTGCTATAGGTGACGAGATTAGGAGGTGGTTCACGCCCATCATA
ATGCTGAAACCAAAAACAAATGCTTTC
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