EY728239

Overview
NameEY728239
Unique NameEY728239
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSMA1_HALMA (Proteasome subunit alpha 1 OS=Haloarcula marismortui GN=psmA1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11
Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRL+QVEYA +AVK  G  SIGVR  D V +   K++   L++ +SV  +     ++G+ + G +ADAR L+  AR +A   + +YG  + V+ L K
Sbjct:   21 GRLYQVEYAREAVKR-GTASIGVRTSDGVVLAVDKRIRSPLMERSSVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYGEPVGVETLTK 116          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA5_DROME (Proteasome subunit alpha type-5 OS=Drosophila melanogaster GN=Prosalpha5 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.570e-11
Identity = 35/97 (36.08%), Postives = 60/97 (61.86%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRLFQVEYA +A+K  G T+IG+   + V +  +K++   L+  ++V  +  + K++G   +G++ADARTL+++AR E     F Y   M ++  A+
Sbjct:   19 GRLFQVEYAIEAIKL-GSTAIGICTPEGVVLAVEKRITSPLMVPSTVEKIVEVDKHIGCATSGLMADARTLIERARVECQNHWFVYNERMSIESCAQ 114          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA4_SPIOL (Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.570e-11
Identity = 38/98 (38.78%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRL+QVEYA +A+  AG ++IG+  KD V ++ +KKV  KLL   TS   ++ I  ++     G+++DA  L+  AR +A  + F Y   MPV+ L +
Sbjct:   16 GRLYQVEYAMEAIGNAG-SAIGILAKDGVVLIGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQ 112          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA4_PETHY (Proteasome subunit alpha type-4 OS=Petunia hybrida GN=PAC1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.570e-11
Identity = 39/98 (39.80%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRL+QVEYA +A+  AG ++IG+  KD V +V +KKV  KLL   TS   ++ I  ++     G+++DA  L+  AR +A  + F Y   MPV+ L +
Sbjct:   16 GRLYQVEYAMEAIGNAG-SAIGISSKDGVVLVGEKKVTSKLLQTSTSSEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQ 112          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA3_DROME (Proteasome subunit alpha type-3 OS=Drosophila melanogaster GN=Prosalpha7 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.570e-11
Identity = 35/92 (38.04%), Postives = 58/92 (63.04%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPV 288
            GR+FQ++YA KAV+ +G T IG+RGKD+V +  +K +  KL +  +   +F I K +G+   G++AD   +   AR EAA +R ++   +P+
Sbjct:   19 GRVFQIDYASKAVEKSG-TVIGIRGKDAVVLAVEKIITSKLYEPDAGGRIFTIEKNIGMAVAGLVADGNFVADIARQEAANYRQQFEQAIPL 109          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA4_ARATH (Proteasome subunit alpha type-4 OS=Arabidopsis thaliana GN=PAC1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11
Identity = 38/98 (38.78%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRL+QVEYA +A+  AG ++IG+  KD V ++ +KKV  KLL   TS   ++ I  ++     G+++DA  L+  AR +A  + F Y   MPV+ L +
Sbjct:   16 GRLYQVEYAMEAIGNAG-SAIGILSKDGVVLIGEKKVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFMYQEPMPVEQLVQ 112          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA3_SCHPO (Probable proteasome subunit alpha type-3 OS=Schizosaccharomyces pombe GN=SPCC1795.04c PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.677e-11
Identity = 38/96 (39.58%), Postives = 58/96 (60.42%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLA 300
            GRLFQ EYA+KAV+ A  T IG++ +D V +  +K V  KLL       +  + +++G+  TG I D + +V++AR EA  +R  YG  +P  V+A
Sbjct:   18 GRLFQAEYAYKAVENAS-TCIGIKCEDGVILALEKVVTSKLLKPRVNNRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIA 112          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSMA1_HALVO (Proteasome subunit alpha 1 OS=Halobacterium volcanii GN=psmA1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.497e-11
Identity = 37/97 (38.14%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRL+QVEYA +AVK  G  SIGVR  + V +   K+    L++ TSV  +     ++G+ + G +ADAR L+  AR+++   R +YG  + ++ L K
Sbjct:   21 GRLYQVEYAREAVKR-GTASIGVRTPEGVVLAADKRSRSPLMEPTSVEKIHKADDHIGIASAGHVADARQLIDFARHQSQVNRLRYGEPIGIETLTK 116          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSMA_THEVO (Proteasome subunit alpha OS=Thermoplasma volcanium GN=psmA PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.567e-11
Identity = 36/97 (37.11%), Postives = 61/97 (62.89%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRLFQVEYA +AVK  G T++G++  + V +++ KK+  KL++  S+  +  I  Y+  + +G++ADAR L+  AR  A + +  YG  + ++ L K
Sbjct:   19 GRLFQVEYAREAVKK-GSTALGLKFSNGVLLISDKKIRSKLIEQNSLEKIQLIDDYVAAVTSGLVADARVLIDFARISAQQEKVTYGSLVNIENLVK 114          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSMA_THEAC (Proteasome subunit alpha OS=Thermoplasma acidophilum GN=psmA PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.567e-11
Identity = 37/97 (38.14%), Postives = 61/97 (62.89%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 303
            GRLFQVEYA +AVK  G T++G++  + V +++ KKV  +L++  S+  +  I  Y+  + +G++ADAR LV  AR  A + +  YG  + ++ L K
Sbjct:   19 GRLFQVEYAREAVKK-GSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVK 114          
The following BLAST results are available for this feature:
BLAST of EY728239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
PSMA1_HALMA1.202e-1139.18Proteasome subunit alpha 1 OS=Haloarcula marismort... [more]
PSA5_DROME1.570e-1136.08Proteasome subunit alpha type-5 OS=Drosophila mela... [more]
PSA4_SPIOL1.570e-1138.78Proteasome subunit alpha type-4 OS=Spinacia olerac... [more]
PSA4_PETHY1.570e-1139.80Proteasome subunit alpha type-4 OS=Petunia hybrida... [more]
PSA3_DROME1.570e-1138.04Proteasome subunit alpha type-3 OS=Drosophila mela... [more]
PSA4_ARATH2.050e-1138.78Proteasome subunit alpha type-4 OS=Arabidopsis tha... [more]
PSA3_SCHPO2.677e-1139.58Probable proteasome subunit alpha type-3 OS=Schizo... [more]
PSMA1_HALVO3.497e-1138.14Proteasome subunit alpha 1 OS=Halobacterium volcan... [more]
PSMA_THEVO4.567e-1137.11Proteasome subunit alpha OS=Thermoplasma volcanium... [more]
PSMA_THEAC4.567e-1138.14Proteasome subunit alpha OS=Thermoplasma acidophil... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-C06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728239 ID=EY728239; Name=EY728239; organism=Citrus sinensis; type=EST; length=927bp
CCACGCGTCCGGGGTCGTCTCTTTCAAGTCGAGTATGCTTTCAAAGCTGT
TAAGGCTGCTGGGGTTACCTCTATCGGTGTTCGAGGAAAGGATTCAGTCT
GTGTTGTGACTCAGAAGAAGGTCCCGGACAAGCTTTTGGATCATACAAGT
GTCACACATCTTTTCCCAATCACAAAGTACCTTGGATTGCTGGCAACTGG
AATGATAGCTGATGCAAGGACATTGGTTCAGCAGGCAAGATATGAAGCCG
CTGAGTTTCGCTTCAAATATGGATATGAAATGCCTGTGGATGTGTTAGCC
AAATGGTAAGTTTTCATATCCTTTTAAGTTGAATTCTAGTTTGCTTGTTT
AGTATTCGATATTTTCTGCAAATTGTTGACCGAACATTGCCTTTTTCCTT
ACTCATTTTTTGTCACTTTACTGCTTAAGTTTTGGTTAAATGTTGCAGTA
CTACTATCTGAAAAACAGTTATGTTAATTTCCTTTCATGTACAGGATTGC
AGACAAATCACAAGTATATACTCAACATGCTTATATGAGACCACTTGGTG
TAGTTGCTATGGTTTTGAGTATTGACGAAGAATGTGGACCTCGCCTCTTT
AAGTGTGACCCTGCTGGCCATTTCTTTGGCCACAAGGCAACAAGTGCTGG
ATTGAAGGAGCAAGAGGCAATTAATTTCTTGGAGAAGAGATGAAGAATGA
TCCTGCGTTTACCTTTCAGAAACTGTGCAGACTGCAATTTCCCACCTGCA
TCAGTCCCTGCAGAGGATTTTAGGCNAGTGAAATTGANNGTTGCGTGNTG
AGCAAGGAGAATCCAGAATCAGAGTTTTGTCCATCGAGGAGATCGATGAG
CCTTGACTGCTATAGGTGACGAGATTAGGAGGTGGTTCACGCCCATCATA
ATGCTGAAACCAAAAACAAATGCTTTC
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