EY728195

Overview
NameEY728195
Unique NameEY728195
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length976
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728195 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.948e-11
Identity = 47/135 (34.81%), Postives = 67/135 (49.63%), Query Frame = 1
Query:   58 KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFV 453
            K+K+ INGFGRIGR   R    R D  ++++A+ND        +++ KYDS  G +      V  D   + G K + V   RNP  +PW + G + V+E TGVF                V+I+AP K D P +V
Sbjct:   57 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTG-GVKQASHLLKYDSTLGIFDADVKPVGTDGISVDG-KVIQVVSDRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYV 189          
BLAST of EY728195 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 6.462e-11
Identity = 47/135 (34.81%), Postives = 67/135 (49.63%), Query Frame = 1
Query:   58 KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFV 453
            ++K+ INGFGRIGR   R    R D  ++++A+ND        +++ KYDS  G +      V  D   + G K + V   RNP  +PW E G + V+E TGVF                V+I+AP K D P +V
Sbjct:   70 QLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTG-GVKQASHLLKYDSTLGIFDADVKPVGTDGISVDG-KVIKVVSDRNPANLPWKELGIDLVIEGTGVFVDREGAGRHITAGAKKVLITAPGKGDIPTYV 202          
BLAST of EY728195 vs. ExPASy Swiss-Prot
Match: G3PA_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.439e-11
Identity = 43/130 (33.08%), Postives = 68/130 (52.31%), Query Frame = 1
Query:   76 NGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFV 453
            NGFGRIGR   R +  R +  +E++A+ND        +++ KYDS  G++   ++K+ DD  +    K + V   R+P ++PW E   + V+E TGVF                V+I+AP+K  D P +V
Sbjct:    1 NGFGRIGRNFLRCLETRQNSLLEVIAINDSG-GVKQASHLLKYDSTLGKFDA-DVKIVDDGHISVNGKSIRVVSSRDPTKLPWGEMEIDLVIEGTGVFIDTPGASKHIEAGAKKVLITAPAKGSDIPTYV 128          
BLAST of EY728195 vs. ExPASy Swiss-Prot
Match: G3P1_STAES (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.439e-11
Identity = 42/125 (33.60%), Postives = 68/125 (54.40%), Query Frame = 1
Query:   61 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK 435
            +K+ INGFGRIGRL  R I   + +E+VAVND     D + ++ KYD++ G++   E++V +    + G K +  F   +  ++PW +   + V+E TG +T               V+ISAP+K
Sbjct:    3 IKVAINGFGRIGRLAFRRIQDVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEVIEGGFRVNG-KEIKSFDEPDAGKLPWGDLDIDVVLECTGFYTDKEKAQAHIDAGAKKVLISAPAK 124          
BLAST of EY728195 vs. ExPASy Swiss-Prot
Match: G3P1_STAEQ (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.439e-11
Identity = 42/125 (33.60%), Postives = 68/125 (54.40%), Query Frame = 1
Query:   61 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK 435
            +K+ INGFGRIGRL  R I   + +E+VAVND     D + ++ KYD++ G++   E++V +    + G K +  F   +  ++PW +   + V+E TG +T               V+ISAP+K
Sbjct:    3 IKVAINGFGRIGRLAFRRIQDVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEVIEGGFRVNG-KEIKSFDEPDAGKLPWGDLDIDVVLECTGFYTDKEKAQAHIDAGAKKVLISAPAK 124          
BLAST of EY728195 vs. ExPASy Swiss-Prot
Match: E4PD_SHEB2 (D-erythrose-4-phosphate dehydrogenase OS=Shewanella baltica (strain OS223) GN=epd PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.439e-11
Identity = 37/127 (29.13%), Postives = 70/127 (55.12%), Query Frame = 1
Query:   61 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPS 432
            +++ ING+GRIGR + R + +   R  +++VA+N+     + + ++ +YD+ HG++ H ++K+ DD  +L G+  + +    +P ++PW E   + V E+TGV                 V+IS PS
Sbjct:    2 IRVAINGYGRIGRSILRALYESGKRQQMQIVAINE-LAKPEAIIHLTQYDTTHGRFAH-KVKLVDDH-MLIGDDAIKILHEPDPTKLPWHEMDIDIVYEATGVLLDRQSCEAHIHAGAKQVLISHPS 125          
The following BLAST results are available for this feature:
BLAST of EY728195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
G3PA_TOBAC4.948e-1134.81Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_PEA6.462e-1134.81Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SCEVA8.439e-1133.08Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P1_STAES8.439e-1133.60Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAEQ8.439e-1133.60Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
E4PD_SHEB28.439e-1129.13D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-108-G01-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728195 ID=EY728195; Name=EY728195; organism=Citrus sinensis; type=EST; length=976bp
CGCGGTTCCGGGAATTTCCCGGGGTCGACCCCCGCGTCCGCTCGAGAATC
ATGGGGGAAGGTCAAGATCGGAATCAACGGATTCGGAAGAATTGGTAGGC
TGGTGGCAAGAGTCATCTTGCAGAGGGACGATGTTGAACTCGTTGCTGTT
AATGATCCCTTTATCACAACCGATTACATGACATACATGTTTAAGTACGA
CAGTGTTCACGGTCAATGGAAGCACCATGAATTGAAGGTTAAGGACGATA
AGACCCTTCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTTAGGAAC
CCAGAGGAGATCCCATGGGCTGAGACTGGAGCCGAGTATGTTGTGGAGTC
GACTGGAGTCTTTACTGACAAGGATAAGGCTGCTGCCCATTTGAAGGGTG
GTGCTAAGAAAGTTATCATCTCAGCCCCCAGCAAGGATGCTCCTATGTTT
GTTGGTCGGTGTCAATGAAAAACGAGTACAAACCAGAACTCCAACTTTGT
GGTCCAATGCTAGCTGGCACCACCCACTGCCTTGCTCCCCCCTTGCTAAG
GGCCTTTCTTGACCAGTTTGGGGATTTGTGGAGGTTTGGAAAGAACCCCC
TGTTCCTTCTATTCCTGCGACCCCAAAAAACTGGGGGAAGGGGCCCCTCC
TCACAGGGGATTGGAAGAGGGGGGGCAGGGGCTGCCTTCCTTTCCAACAT
CCTTTCCCTATACAATAATGGGAACCCCCTAAAGGGGTGTTGGAAAAGGC
CTTTGCCTGGCTTTTAAAGGGGAAAAATGAGACGGGTTGGGCTTTCCCGG
GGACCCCAGGGTGGAATTGCCCGGGGGGGTGACCCTCCCAGGGGGAGGGG
GGGGAAAAGAAGGCTCTTTCTTTATGGATAAAAAATTAAAGGCCGCCCCT
ATAGGGGGGGGAGGCAGAAAAGGGGAAAAAAAATAAAGAGGGGAATTTGT
GGGGGAAAAACACCGAGGAGAAAGAA
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