EY728012

Overview
NameEY728012
Unique NameEY728012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1047
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728012 vs. ExPASy Swiss-Prot
Match: CATD_PIG (Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 2.065e-18
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 2
Query:  299 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEIGKSW 499
            LKN+MDAQY+GEIGIG+PPQ F+V+FDTGSSNLWVPS  C    I+C+ H +Y S KS+TY + G ++
Sbjct:    7 LKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSGKSSTYVKNGTTF 74          
BLAST of EY728012 vs. ExPASy Swiss-Prot
Match: NAPSA_MOUSE (Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.697e-18
Identity = 38/67 (56.72%), Postives = 55/67 (82.09%), Query Frame = 2
Query:  293 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEIG 490
            +PL  FM+ QYFG IG+G+PPQNF+V+FDTGSSNLWVPS++C +FS++C+FH R+  + S+++   G
Sbjct:   63 VPLSKFMNTQYFGTIGLGTPPQNFTVVFDTGSSNLWVPSTRCHFFSLACWFHHRFNPKASSSFRPNG 129          
BLAST of EY728012 vs. ExPASy Swiss-Prot
Match: CATD_MOUSE (Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.153e-18
Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 2
Query:  299 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEIGKSW 499
            LKN++DAQY+G+IGIG+PPQ F+V+FDTGSSNLWVPS  C    I+C+ H +Y S KS+TY + G S+
Sbjct:   71 LKNYLDAQYYGDIGIGTPPQCFTVVFDTGSSNLWVPSIHCKILDIACWVHHKYNSDKSSTYVKNGTSF 138          

HSP 2 Score: 21.1718 bits (43), Expect = 3.153e-18
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 3
Query:  516 GSGIISGFFSQNNV 557
            GSG +SG+ SQ+ V
Sbjct:  143 GSGSLSGYLSQDTV 156          
BLAST of EY728012 vs. ExPASy Swiss-Prot
Match: CATD_BOVIN (Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.104e-18
Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 2
Query:  299 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEIGKSW 499
            LKN+MDAQY+GEIGIG+PPQ F+V+FDTGS+NLWVPS  C    I+C+ H +Y S KS+TY + G ++
Sbjct:   51 LKNYMDAQYYGEIGIGTPPQCFTVVFDTGSANLWVPSIHCKLLDIACWTHRKYNSDKSSTYVKNGTTF 118          

HSP 2 Score: 21.1718 bits (43), Expect = 4.104e-18
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 3
Query:  516 GSGIISGFFSQNNV 557
            GSG +SG+ SQ+ V
Sbjct:  123 GSGSLSGYLSQDTV 136          
BLAST of EY728012 vs. ExPASy Swiss-Prot
Match: CATD_CLUHA (Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.848e-18
Identity = 55/147 (37.41%), Postives = 80/147 (54.42%), Query Frame = 2
Query:  242 AGVSGVRHRLG-DSDEDILP--LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFS-ISCYFHSRYKSRKSNTYTEIGKSW*K*NYGIWDNFWLLQSKQCLKLGDVWCQGSGFSLRLHKKGKSHFFLLVKGLMEIKRP 670
            AG + ++H  G  S     P  LKN+MDAQY+GEIG+G+P Q F+V+FDTGSSNLW+PS  C F+ I+C  H +Y   KS+TY + G  +    YG       L    C  +GD+  +   F   + + G +       G++ +  P
Sbjct:   46 AGTNSLQHNQGFPSSNAPTPETLKNYMDAQYYGEIGLGTPVQMFTVVFDTGSSNLWLPSIHCSFTDIACLLHHKYNGAKSSTYVKNGTEF-AIQYGSGSLSGYLSQDSC-TIGDIVVEKQLFGEAIKQPGVAFIAAKFDGILGMAYP 190          
BLAST of EY728012 vs. ExPASy Swiss-Prot
Match: CATD_CHIHA (Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 7.848e-18
Identity = 50/125 (40.00%), Postives = 71/125 (56.80%), Query Frame = 2
Query:  299 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEIGKSW*K*NYGIWDNFWLLQSKQCLKLGDVWCQGSGFSLRLHKKGKSHFFLLVKGLMEIKRP 670
            LKN++DAQY+GEIG+G+PPQ F+V+FDTGSSNLWVPS  C    I+C  H +Y S KS+TY + G ++    YG       L    C  +GD+      F   + + G +       G++ +  P
Sbjct:   68 LKNYLDAQYYGEIGLGTPPQPFTVVFDTGSSNLWVPSIHCSLLDIACLLHHKYNSGKSSTYVKNGTAF-AIQYGSGSLSGYLSQDTC-TIGDLAIDSQLFGEAIKQPGVAFIAAKFDGILGMAYP 190          
BLAST of EY728012 vs. ExPASy Swiss-Prot
Match: NAPSA_HUMAN (Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.339e-17
Identity = 38/67 (56.72%), Postives = 52/67 (77.61%), Query Frame = 2
Query:  293 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEIG 490
            +PL N+ D QYFGEIG+G+PPQNF+V FDTGSSNLWVPS +C +FS+ C+ H R+  + S+++   G
Sbjct:   68 VPLSNYRDVQYFGEIGLGTPPQNFTVAFDTGSSNLWVPSRRCHFFSVPCWLHHRFDPKASSSFQANG 134          
BLAST of EY728012 vs. ExPASy Swiss-Prot
Match: ASPP_AEDAE (Lysosomal aspartic protease OS=Aedes aegypti GN=AAEL006169 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.339e-17
Identity = 38/69 (55.07%), Postives = 56/69 (81.16%), Query Frame = 2
Query:  296 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYF-SISCYFHSRYKSRKSNTYTEIGKSW 499
            PL N++DAQY+G I IG+PPQ+F V+FDTGSSNLWVPS +C F +I+C  H++Y ++KS+T+ + G ++
Sbjct:   59 PLSNYLDAQYYGAITIGTPPQSFKVVFDTGSSNLWVPSKECSFTNIACLMHNKYNAKKSSTFEKNGTAF 127          
BLAST of EY728012 vs. ExPASy Swiss-Prot
Match: CATD_SHEEP (Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.527e-17
Identity = 40/68 (58.82%), Postives = 53/68 (77.94%), Query Frame = 2
Query:  299 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNTYTEIGKSW 499
            L N+MDAQY+GEIGIG+PPQ F+V+FDTGS+NLWVPS  C    I+C+ H +Y S KS+TY + G ++
Sbjct:   46 LTNYMDAQYYGEIGIGTPPQCFTVVFDTGSANLWVPSIHCKLLDIACWVHHKYNSDKSSTYVKNGTTF 113          

HSP 2 Score: 21.1718 bits (43), Expect = 1.527e-17
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 3
Query:  516 GSGIISGFFSQNNV 557
            GSG +SG+ SQ+ V
Sbjct:  118 GSGSLSGYLSQDTV 131          
BLAST of EY728012 vs. ExPASy Swiss-Prot
Match: CARP_NANOT (Vacuolar protease A OS=Nannizzia otae (strain CBS 113480) GN=PEP2 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.350e-17
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 2
Query:  275 DSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSW 499
            +S  ++L + NF++AQYF EI IG+PPQ F V+ DTGSSNLWVP   C  SI+C+ HS Y S  S+T+T  G S+
Sbjct:   72 ESGHNVL-IDNFLNAQYFSEISIGTPPQTFKVVLDTGSSNLWVPGKDC-SSIACFLHSTYDSSASSTFTRNGTSF 144          

HSP 2 Score: 25.409 bits (54), Expect = 3.350e-17
Identity = 13/27 (48.15%), Postives = 18/27 (66.67%), Query Frame = 3
Query:  516 GSGIISGFFSQNNV*SWGMFGVKDQVF 596
            GSG + GF SQ+NV   G   +K+Q+F
Sbjct:  149 GSGSLEGFVSQDNV-QIGDMKIKNQLF 174          
The following BLAST results are available for this feature:
BLAST of EY728012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
CATD_PIG2.065e-1861.76Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2[more]
NAPSA_MOUSE2.697e-1856.72Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1[more]
CATD_MOUSE3.153e-1860.29Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1[more]
CATD_BOVIN4.104e-1860.29Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2[more]
CATD_CLUHA7.848e-1837.41Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1[more]
CATD_CHIHA7.848e-1840.00Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV... [more]
NAPSA_HUMAN1.339e-1756.72Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1[more]
ASPP_AEDAE1.339e-1755.07Lysosomal aspartic protease OS=Aedes aegypti GN=AA... [more]
CATD_SHEEP1.527e-1758.82Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 ... [more]
CARP_NANOT3.350e-1753.33Vacuolar protease A OS=Nannizzia otae (strain CBS ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-109-D02-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728012 ID=EY728012; Name=EY728012; organism=Citrus sinensis; type=EST; length=1047bp
CCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCAAACTCAGCTTCA
GCAGAAAACCAAAGAACATCATGGAGCAGAAACTTCTTCGGTCAGTTTTC
TGTTTATGGGTGCTAGCGTCGTGCTTGCTTCTTCCTGCTTCCTCTAATGG
CTTACGGAGAATTGGCTTGAAGAAGCGGCGACTAGATCTTCATAGTCTAA
ATGCTGCAAGAATAACAAGAAAAGAGCGATATATGGGGGGAGCAGGTGTT
AGTGGCGTGCGCCATCGTTTGGGTGATTCAGATGAAGATATATTGCCTTT
GAAGAACTTTATGGATGCTCAATACTTTGGAGAGATTGGTATTGGCTCTC
CCCCACAAAATTTCAGTGTCATATTTGATACCGGCAGTTCCAATCTCTGG
GTTCCATCTTCAAAGTGCTATTTCTCTATTTCCTGCTATTTCCATTCGAG
GTACAAGTCCAGAAAATCCAATACATATACCGAAATTGGAAAATCCTGGT
GAAAATAAAACTATGGGATCTGGGATAATTTCTGGCTTCTTCAGTCAAAA
CAATGTTTAAAGTTGGGGGATGTTTGGTGTCAAGGATCAGGTTTTTCCTT
GAGGCTACACAAAAAAGGGAAGTCTCACTTTTTTCTATTGGTCAAGGGTT
TGATGGAAATAAAAAGGCCTTGGGGTTCCGGGAAAATTTGCAATTGGGGA
AAGCTGTGCCTGGTGGGGGGAAAAATATGGGTTAGAACAGGGGCCTTTTG
AAACCGAAGGAAGGGCTTTACCCATTTCTTGGCTCTAACAGGGAGATCCA
AAACCCTTAAATAAGGGGGGGAAAAAATTTTTTTTTTGGTGGGGGTGATT
TGTATCCAAAAATACTTTTTAAAGAGGGAAAAACTTCTCCCTTTGGATTC
CCGTATGTACATGAAAAAAAAAGGGATCCAGGGGAAGGATCTACCAATAT
GGTGAGGATAAAAAATTATTTCAACACGAATGGAGAAGAACACACCCACC
TACCCCCCATGACGATATAAGGTATACTTAAAGACGGAAAGGTGAGT
back to top