GE213243

Overview
NameGE213243
Unique NameGE213243
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB1_SUIBO (Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.485e-35
Identity = 43/57 (75.44%), Postives = 52/57 (91.23%), Query Frame = 3 
Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNV 227
            M+DAKNMM A+DPR GRYLTV+A+FRGK+S KEV+EQM NV+NK S+YFV+WIPNNV
Sbjct:  293 MFDAKNMMAASDPRHGRYLTVAAVFRGKVSMKEVEEQMQNVQNKNSAYFVEWIPNNV 349

HSP 2 Score: 77.0258 bits (188), Expect = 2.485e-35
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 2 
Query:  239 CDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            CDIPPRG+ M  TF GNST+IQ++F+RVS+ F AMF+RKAFLHWY
Sbjct:  354 CDIPPRGVKMAVTFLGNSTAIQELFKRVSDHFTAMFKRKAFLHWY 398
[Close]
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBBN_GUITH (Tubulin beta chain, nucleomorph OS=Guillardia theta GN=tubB PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.238e-35
Identity = 38/58 (65.52%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230
            M+D+KNMM A DP+ GRYLT +A FRGK+STKEVD+QMI ++NK S +FV+WIP+N+K
Sbjct:  293 MFDSKNMMAACDPKNGRYLTAAAYFRGKISTKEVDDQMIEIQNKQSEHFVEWIPHNIK 350

HSP 2 Score: 82.4185 bits (202), Expect = 3.238e-35
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 2 
Query:  233 SVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            SVCDIPP+G+ M + F GNSTSIQ++F+RV EQF+AMFRRKAFLHWY
Sbjct:  352 SVCDIPPKGMKMSAAFIGNSTSIQELFKRVGEQFQAMFRRKAFLHWY 398
[Close]
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB_BOTFU (Tubulin beta chain OS=Botryotinia fuckeliana GN=tubA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.153e-35
Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 3 
Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVKLVFVTFLP 254
            M+D KNMM A+D R GRYLT SA+FRGK+S KEV++QM NV+NK SSYFV+WIPNNV+    +  P
Sbjct:  293 MYDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPP 358

HSP 2 Score: 81.2629 bits (199), Expect = 7.153e-35
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = 2 
Query:  227 EVSVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            + ++C IPPRGL M STF GNSTSIQ++F+RV +QF AMFRRKAFLHWY
Sbjct:  350 QTALCSIPPRGLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWY 398
[Close]
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB_PESMI (Tubulin beta chain OS=Pestalotiopsis microspora GN=TUBB PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.214e-34
Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 3 
Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVKLVFVTFLP 254
            M+D KNMM A+D R GRYLT SA+FRGK+S KEV++QM NV+NK SSYFV+WIPNNV+    +  P
Sbjct:  293 MFDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPP 358

HSP 2 Score: 80.8777 bits (198), Expect = 1.214e-34
Identity = 34/49 (69.39%), Postives = 42/49 (85.71%), Query Frame = 2 
Query:  227 EVSVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            + ++C IPPRGL M STF GNST+IQ++F+R+ EQF AMFRRKAFLHWY
Sbjct:  350 QTALCSIPPRGLKMSSTFVGNSTAIQELFKRIGEQFTAMFRRKAFLHWY 398
[Close]
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB_NEUCR (Tubulin beta chain OS=Neurospora crassa GN=tub-2 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.214e-34
Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 3 
Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVKLVFVTFLP 254
            M+D KNMM A+D R GRYLT SA+FRGK+S KEV++QM NV+NK SSYFV+WIPNNV+    +  P
Sbjct:  293 MFDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPP 358

HSP 2 Score: 80.8777 bits (198), Expect = 1.214e-34
Identity = 34/49 (69.39%), Postives = 42/49 (85.71%), Query Frame = 2 
Query:  227 EVSVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            + ++C IPPRGL M STF GNST+IQ++F+R+ EQF AMFRRKAFLHWY
Sbjct:  350 QTALCSIPPRGLKMSSTFVGNSTAIQELFKRIGEQFTAMFRRKAFLHWY 398
[Close]
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB_VENIN (Tubulin beta chain OS=Venturia inaequalis PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.214e-34
Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 3 
Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVKLVFVTFLP 254
            M+D KNMM A+D R GRYLT SA+FRGK+S KEV++QM NV+NK SSYFV+WIPNNV+    +  P
Sbjct:  293 MFDPKNMMAASDFRNGRYLTSSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPP 358

HSP 2 Score: 81.2629 bits (199), Expect = 1.214e-34
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = 2 
Query:  227 EVSVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            + ++C IPPRGL M STF GNSTSIQ++F+RV +QF AMFRRKAFLHWY
Sbjct:  350 QTALCSIPPRGLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWY 398
[Close]
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB_UNCNE (Tubulin beta chain OS=Uncinula necator PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.581e-34
Identity = 41/66 (62.12%), Postives = 52/66 (78.79%), Query Frame = 3 
Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVKLVFVTFLP 254
            M+D KNMM A+D R GRYLT SA+FRGK+S KEV++QM NV+NK S+YFV+WIPNNV+    +  P
Sbjct:  293 MYDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSAYFVEWIPNNVQTALCSIPP 358

HSP 2 Score: 81.2629 bits (199), Expect = 1.581e-34
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = 2 
Query:  227 EVSVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            + ++C IPPRGL M STF GNSTSIQ++F+RV +QF AMFRRKAFLHWY
Sbjct:  350 QTALCSIPPRGLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWY 398
[Close]
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB_COCHE (Tubulin beta chain OS=Cochliobolus heterostrophus GN=TUB1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.581e-34
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 3 
Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVKLVFVTFLP 254
            M+D KNMM A+D R GRYLT SA FRGK+S KEV++QM NV+NK SSYFV+WIPNNV+    +  P
Sbjct:  293 MFDPKNMMAASDFRNGRYLTCSAYFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPP 358

HSP 2 Score: 81.2629 bits (199), Expect = 1.581e-34
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = 2 
Query:  227 EVSVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            + ++C IPPRGL M STF GNSTSIQ++F+RV +QF AMFRRKAFLHWY
Sbjct:  350 QTALCSIPPRGLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWY 398
[Close]
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB2_ERYPI (Tubulin beta-2 chain OS=Erysiphe pisi GN=TUB2 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.581e-34
Identity = 41/66 (62.12%), Postives = 52/66 (78.79%), Query Frame = 3 
Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVKLVFVTFLP 254
            M+D KNMM A+D R GRYLT SA+FRGK+S KEV++QM NV+NK S+YFV+WIPNNV+    +  P
Sbjct:  293 MYDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSAYFVEWIPNNVQTALCSIPP 358

HSP 2 Score: 81.2629 bits (199), Expect = 1.581e-34
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = 2 
Query:  227 EVSVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            + ++C IPPRGL M STF GNSTSIQ++F+RV +QF AMFRRKAFLHWY
Sbjct:  350 QTALCSIPPRGLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWY 398
[Close]
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB_METAN (Tubulin beta chain OS=Metarhizium anisopliae PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.059e-34
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 3 
Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVKLVFVTFLP 254
            M+D KNMM A+D R GRYLT SA+FRGK++ KEV++QM NV+NK SSYFV+WIPNN++       P
Sbjct:  293 MFDPKNMMAASDFRNGRYLTCSAIFRGKVAMKEVEDQMRNVQNKNSSYFVEWIPNNIQTALCAIPP 358

HSP 2 Score: 82.0333 bits (201), Expect = 2.059e-34
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 2 
Query:  227 EVSVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            + ++C IPPRGL M STF GNSTSIQ++F+RV EQF AMFRRKAFLHWY
Sbjct:  350 QTALCAIPPRGLKMSSTFIGNSTSIQELFKRVGEQFTAMFRRKAFLHWY 398
The following BLAST results are available for this feature:
BLAST of GE213243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
TBB1_SUIBO2.485e-3575.44Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 P... [more]
TBBN_GUITH3.238e-3565.52Tubulin beta chain, nucleomorph OS=Guillardia thet... [more]
TBB_BOTFU7.153e-3563.64Tubulin beta chain OS=Botryotinia fuckeliana GN=tu... [more]
TBB_PESMI1.214e-3463.64Tubulin beta chain OS=Pestalotiopsis microspora GN... [more]
TBB_NEUCR1.214e-3463.64Tubulin beta chain OS=Neurospora crassa GN=tub-2 P... [more]
TBB_VENIN1.214e-3463.64Tubulin beta chain OS=Venturia inaequalis PE=3 SV=... [more]
TBB_UNCNE1.581e-3462.12Tubulin beta chain OS=Uncinula necator PE=3 SV=1[more]
TBB_COCHE1.581e-3463.64Tubulin beta chain OS=Cochliobolus heterostrophus ... [more]
TBB2_ERYPI1.581e-3462.12Tubulin beta-2 chain OS=Erysiphe pisi GN=TUB2 PE=2... [more]
TBB_METAN2.059e-3460.61Tubulin beta chain OS=Metarhizium anisopliae PE=3 ... [more]

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Properties
Property NameValue
Genbank description92 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213243 ID=GE213243; Name=GE213243; organism=Citrus sinensis; type=EST; length=394bp
ATTACCAGGGTCCCGGCCGAGGTACCGTGCCTTGATTTTTTTTTTTTTTT
TTTTTTATGTGGGATGCCAAGAACATGATGGGTGCTGCCGACCCAAGGTT
TGGTCGTTACCTCACTGTTTCTGCCATGTTCAGGGGTAAAATGAGCACCA
AGGAAGTTGACGAGCAGATGATCAATGTTCGAAACAAATGCTCTTCCTAC
TTTGTGGATTGGATTCCAAACAATGTGAAGTTAGTGTTTGTGACATTCCT
CCCAGAGGTCTCTCCATGGTATCCACCTTCTTCGGGAACTCAACATCCAT
CCAAAAAATGTTCCGAAGAGTGAGTGAGCAATTCAAAGCTATGTTTAGGA
GAAAGGCCTTCCTTCACTGGTACCTGCCCGGGCGGCCGCTCGAA
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