GE213243
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB2_SUIBO (Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.775e-12 Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 3 Query: 57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVKLVFVTFLPEVSPWYPPSSGTQHPSKKCSEE 320 ++D KN++ A+DPRFGRYLT + +FRGK+S+ E + ++ ++ K S+ FV+WIP+NV + L V P P + + C +E Sbjct: 297 LFDKKNLLVASDPRFGRYLTAACIFRGKVSSHEAENSVMQLQRKNSNLFVEWIPDNVSV----SLCSVPPVGQPQAAVALANSTCMQE 380
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBA_TETTH (Tubulin alpha chain OS=Tetrahymena thermophila PE=1 SV=1) HSP 1 Score: 51.9878 bits (123), Expect = 1.451e-11 Identity = 24/69 (34.78%), Postives = 37/69 (53.62%), Query Frame = 3 Query: 60 WDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVKLVFVTFLPEVSP 266 ++ NMM DPR G+Y+ S M+RG + K+V+ + ++ K + FVDW P K+ P V P Sbjct: 296 FEPANMMAKCDPRHGKYMACSMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVP 364 HSP 2 Score: 38.5058 bits (88), Expect = 1.451e-11 Identity = 16/41 (39.02%), Postives = 28/41 (68.29%), Query Frame = 2 Query: 254 RGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWYL 376 R + M+S NST+I ++F R+ +F M+ ++AF+HWY+ Sbjct: 373 RAVCMIS----NSTAIAEVFSRLDHKFDLMYAKRAFVHWYV 409
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBA_TETPY (Tubulin alpha chain OS=Tetrahymena pyriformis PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 1.884e-11 Identity = 21/58 (36.21%), Postives = 34/58 (58.62%), Query Frame = 3 Query: 60 WDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVKL 233 ++ NMM DPR G+Y+ S M+RG + K+V+ + ++ K + FVDW P K+ Sbjct: 296 FEPANMMAKCDPRHGKYMACSMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKV 353 HSP 2 Score: 38.5058 bits (88), Expect = 1.884e-11 Identity = 16/41 (39.02%), Postives = 28/41 (68.29%), Query Frame = 2 Query: 254 RGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWYL 376 R + M+S NST+I ++F R+ +F M+ ++AF+HWY+ Sbjct: 373 RAVCMIS----NSTAIAEVFSRLDHKFDLMYAKRAFVHWYV 409
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBAN_GUITH (Tubulin alpha chain, nucleomorph OS=Guillardia theta GN=tubA PE=3 SV=1) HSP 1 Score: 48.1358 bits (113), Expect = 5.350e-11 Identity = 20/57 (35.09%), Postives = 33/57 (57.89%), Query Frame = 3 Query: 60 WDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230 ++ +MM DPR G+Y+ MFRG ++ K+V+ + ++ K + FVDW P K Sbjct: 296 FEPNSMMAKCDPRRGKYMACCLMFRGDVAPKDVNGSVAAIKTKKTIQFVDWCPTGFK 352 HSP 2 Score: 40.4318 bits (93), Expect = 5.350e-11 Identity = 16/41 (39.02%), Postives = 30/41 (73.17%), Query Frame = 2 Query: 254 RGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWYL 376 R + M+S NST+I ++F R++++F M+ ++AF+HWY+ Sbjct: 373 RAVCMIS----NSTAISEVFSRINKKFDLMYSKRAFVHWYV 409
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBA_PLAYO (Tubulin alpha chain OS=Plasmodium yoelii yoelii GN=PY01155 PE=2 SV=2) HSP 1 Score: 48.9062 bits (115), Expect = 6.941e-11 Identity = 20/57 (35.09%), Postives = 32/57 (56.14%), Query Frame = 3 Query: 60 WDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230 ++ NMM DPR G+Y+ M+RG + K+V+ + ++ K + FVDW P K Sbjct: 296 FEPANMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFK 352 HSP 2 Score: 39.2762 bits (90), Expect = 6.941e-11 Identity = 16/41 (39.02%), Postives = 29/41 (70.73%), Query Frame = 2 Query: 254 RGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWYL 376 R + M+S NST+I ++F R+ ++F M+ ++AF+HWY+ Sbjct: 373 RAVCMIS----NSTAIAEVFSRMDQKFDLMYAKRAFVHWYV 409
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBA_PLAFK (Tubulin alpha chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=1) HSP 1 Score: 48.9062 bits (115), Expect = 6.941e-11 Identity = 20/57 (35.09%), Postives = 32/57 (56.14%), Query Frame = 3 Query: 60 WDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230 ++ NMM DPR G+Y+ M+RG + K+V+ + ++ K + FVDW P K Sbjct: 296 FEPANMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFK 352 HSP 2 Score: 39.2762 bits (90), Expect = 6.941e-11 Identity = 16/41 (39.02%), Postives = 29/41 (70.73%), Query Frame = 2 Query: 254 RGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWYL 376 R + M+S NST+I ++F R+ ++F M+ ++AF+HWY+ Sbjct: 373 RAVCMIS----NSTAIAEVFSRMDQKFDLMYAKRAFVHWYV 409
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBA2_GOSHI (Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 SV=1) HSP 1 Score: 47.7506 bits (112), Expect = 6.943e-11 Identity = 19/57 (33.33%), Postives = 33/57 (57.89%), Query Frame = 3 Query: 60 WDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230 ++ +MM DPR G+Y+ M+RG + K+V+ + +++ K + FVDW P K Sbjct: 296 FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVASIKTKRTIQFVDWCPTGFK 352 HSP 2 Score: 40.4318 bits (93), Expect = 6.943e-11 Identity = 16/41 (39.02%), Postives = 28/41 (68.29%), Query Frame = 2 Query: 254 RGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWYL 376 R + M+S NSTS+ ++F R+ +F M+ ++AF+HWY+ Sbjct: 373 RAVCMIS----NSTSVAEVFSRIDHKFDLMYAKRAFIHWYV 409
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBAE_PHYPO (Tubulin alpha-2B chain OS=Physarum polycephalum GN=ALTBE PE=2 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 9.011e-11 Identity = 23/70 (32.86%), Postives = 36/70 (51.43%), Query Frame = 3 Query: 57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVKLVFVTFLPEVSP 266 ++D +MM DPR G+Y+ M+RG + K+V+ + ++ K + FVDW P K P V P Sbjct: 295 VFDPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAVIKTKRTIQFVDWCPTGFKCGINYQPPSVVP 364 HSP 2 Score: 39.2762 bits (90), Expect = 9.011e-11 Identity = 16/41 (39.02%), Postives = 28/41 (68.29%), Query Frame = 2 Query: 254 RGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWYL 376 R L M+S N+T+I ++F R+ +F M+ ++AF+HWY+ Sbjct: 373 RALCMIS----NTTAIAEVFSRIDHKFDLMYAKRAFVHWYV 409 The following BLAST results are available for this feature:
BLAST of GE213243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 238
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Sequences
The
following sequences are available for this feature:
EST sequence >GE213243 ID=GE213243; Name=GE213243; organism=Citrus sinensis; type=EST; length=394bpback to top |