GE213243

Overview
NameGE213243
Unique NameGE213243
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB2_SUIBO (Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.775e-12
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 3
Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVKLVFVTFLPEVSPWYPPSSGTQHPSKKCSEE 320
            ++D KN++ A+DPRFGRYLT + +FRGK+S+ E +  ++ ++ K S+ FV+WIP+NV +     L  V P   P +     +  C +E
Sbjct:  297 LFDKKNLLVASDPRFGRYLTAACIFRGKVSSHEAENSVMQLQRKNSNLFVEWIPDNVSV----SLCSVPPVGQPQAAVALANSTCMQE 380          
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBA_TETTH (Tubulin alpha chain OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 1.451e-11
Identity = 24/69 (34.78%), Postives = 37/69 (53.62%), Query Frame = 3
Query:   60 WDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVKLVFVTFLPEVSP 266
            ++  NMM   DPR G+Y+  S M+RG +  K+V+  +  ++ K +  FVDW P   K+      P V P
Sbjct:  296 FEPANMMAKCDPRHGKYMACSMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVP 364          

HSP 2 Score: 38.5058 bits (88), Expect = 1.451e-11
Identity = 16/41 (39.02%), Postives = 28/41 (68.29%), Query Frame = 2
Query:  254 RGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWYL 376
            R + M+S    NST+I ++F R+  +F  M+ ++AF+HWY+
Sbjct:  373 RAVCMIS----NSTAIAEVFSRLDHKFDLMYAKRAFVHWYV 409          
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBA_TETPY (Tubulin alpha chain OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 1.884e-11
Identity = 21/58 (36.21%), Postives = 34/58 (58.62%), Query Frame = 3
Query:   60 WDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVKL 233
            ++  NMM   DPR G+Y+  S M+RG +  K+V+  +  ++ K +  FVDW P   K+
Sbjct:  296 FEPANMMAKCDPRHGKYMACSMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKV 353          

HSP 2 Score: 38.5058 bits (88), Expect = 1.884e-11
Identity = 16/41 (39.02%), Postives = 28/41 (68.29%), Query Frame = 2
Query:  254 RGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWYL 376
            R + M+S    NST+I ++F R+  +F  M+ ++AF+HWY+
Sbjct:  373 RAVCMIS----NSTAIAEVFSRLDHKFDLMYAKRAFVHWYV 409          
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBAN_GUITH (Tubulin alpha chain, nucleomorph OS=Guillardia theta GN=tubA PE=3 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 5.350e-11
Identity = 20/57 (35.09%), Postives = 33/57 (57.89%), Query Frame = 3
Query:   60 WDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230
            ++  +MM   DPR G+Y+    MFRG ++ K+V+  +  ++ K +  FVDW P   K
Sbjct:  296 FEPNSMMAKCDPRRGKYMACCLMFRGDVAPKDVNGSVAAIKTKKTIQFVDWCPTGFK 352          

HSP 2 Score: 40.4318 bits (93), Expect = 5.350e-11
Identity = 16/41 (39.02%), Postives = 30/41 (73.17%), Query Frame = 2
Query:  254 RGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWYL 376
            R + M+S    NST+I ++F R++++F  M+ ++AF+HWY+
Sbjct:  373 RAVCMIS----NSTAISEVFSRINKKFDLMYSKRAFVHWYV 409          
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBA_PLAYO (Tubulin alpha chain OS=Plasmodium yoelii yoelii GN=PY01155 PE=2 SV=2)

HSP 1 Score: 48.9062 bits (115), Expect = 6.941e-11
Identity = 20/57 (35.09%), Postives = 32/57 (56.14%), Query Frame = 3
Query:   60 WDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230
            ++  NMM   DPR G+Y+    M+RG +  K+V+  +  ++ K +  FVDW P   K
Sbjct:  296 FEPANMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFK 352          

HSP 2 Score: 39.2762 bits (90), Expect = 6.941e-11
Identity = 16/41 (39.02%), Postives = 29/41 (70.73%), Query Frame = 2
Query:  254 RGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWYL 376
            R + M+S    NST+I ++F R+ ++F  M+ ++AF+HWY+
Sbjct:  373 RAVCMIS----NSTAIAEVFSRMDQKFDLMYAKRAFVHWYV 409          
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBA_PLAFK (Tubulin alpha chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 6.941e-11
Identity = 20/57 (35.09%), Postives = 32/57 (56.14%), Query Frame = 3
Query:   60 WDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230
            ++  NMM   DPR G+Y+    M+RG +  K+V+  +  ++ K +  FVDW P   K
Sbjct:  296 FEPANMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFK 352          

HSP 2 Score: 39.2762 bits (90), Expect = 6.941e-11
Identity = 16/41 (39.02%), Postives = 29/41 (70.73%), Query Frame = 2
Query:  254 RGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWYL 376
            R + M+S    NST+I ++F R+ ++F  M+ ++AF+HWY+
Sbjct:  373 RAVCMIS----NSTAIAEVFSRMDQKFDLMYAKRAFVHWYV 409          
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBA2_GOSHI (Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 6.943e-11
Identity = 19/57 (33.33%), Postives = 33/57 (57.89%), Query Frame = 3
Query:   60 WDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230
            ++  +MM   DPR G+Y+    M+RG +  K+V+  + +++ K +  FVDW P   K
Sbjct:  296 FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVASIKTKRTIQFVDWCPTGFK 352          

HSP 2 Score: 40.4318 bits (93), Expect = 6.943e-11
Identity = 16/41 (39.02%), Postives = 28/41 (68.29%), Query Frame = 2
Query:  254 RGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWYL 376
            R + M+S    NSTS+ ++F R+  +F  M+ ++AF+HWY+
Sbjct:  373 RAVCMIS----NSTSVAEVFSRIDHKFDLMYAKRAFIHWYV 409          
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBAE_PHYPO (Tubulin alpha-2B chain OS=Physarum polycephalum GN=ALTBE PE=2 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 9.011e-11
Identity = 23/70 (32.86%), Postives = 36/70 (51.43%), Query Frame = 3
Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVKLVFVTFLPEVSP 266
            ++D  +MM   DPR G+Y+    M+RG +  K+V+  +  ++ K +  FVDW P   K       P V P
Sbjct:  295 VFDPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAVIKTKRTIQFVDWCPTGFKCGINYQPPSVVP 364          

HSP 2 Score: 39.2762 bits (90), Expect = 9.011e-11
Identity = 16/41 (39.02%), Postives = 28/41 (68.29%), Query Frame = 2
Query:  254 RGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWYL 376
            R L M+S    N+T+I ++F R+  +F  M+ ++AF+HWY+
Sbjct:  373 RALCMIS----NTTAIAEVFSRIDHKFDLMYAKRAFVHWYV 409          
The following BLAST results are available for this feature:
BLAST of GE213243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
TBB2_SUIBO1.775e-1238.64Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 P... [more]
TBA_TETTH1.451e-1134.78Tubulin alpha chain OS=Tetrahymena thermophila PE=... [more]
TBA_TETPY1.884e-1136.21Tubulin alpha chain OS=Tetrahymena pyriformis PE=3... [more]
TBAN_GUITH5.350e-1135.09Tubulin alpha chain, nucleomorph OS=Guillardia the... [more]
TBA_PLAYO6.941e-1135.09Tubulin alpha chain OS=Plasmodium yoelii yoelii GN... [more]
TBA_PLAFK6.941e-1135.09Tubulin alpha chain OS=Plasmodium falciparum (isol... [more]
TBA2_GOSHI6.943e-1133.33Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 S... [more]
TBAE_PHYPO9.011e-1132.86Tubulin alpha-2B chain OS=Physarum polycephalum GN... [more]

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Properties
Property NameValue
Genbank description92 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213243 ID=GE213243; Name=GE213243; organism=Citrus sinensis; type=EST; length=394bp
ATTACCAGGGTCCCGGCCGAGGTACCGTGCCTTGATTTTTTTTTTTTTTT
TTTTTTATGTGGGATGCCAAGAACATGATGGGTGCTGCCGACCCAAGGTT
TGGTCGTTACCTCACTGTTTCTGCCATGTTCAGGGGTAAAATGAGCACCA
AGGAAGTTGACGAGCAGATGATCAATGTTCGAAACAAATGCTCTTCCTAC
TTTGTGGATTGGATTCCAAACAATGTGAAGTTAGTGTTTGTGACATTCCT
CCCAGAGGTCTCTCCATGGTATCCACCTTCTTCGGGAACTCAACATCCAT
CCAAAAAATGTTCCGAAGAGTGAGTGAGCAATTCAAAGCTATGTTTAGGA
GAAAGGCCTTCCTTCACTGGTACCTGCCCGGGCGGCCGCTCGAA
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