GE213243

Overview
NameGE213243
Unique NameGE213243
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB_CHLRE (Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinhardtii GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.038e-42
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 3 
Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230
            MWDAKNMM AADPR GRYLT SA+FRG+MSTKEVDEQM+NV+NK SSYFV+WIPNNVK
Sbjct:  293 MWDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVK 350

HSP 2 Score: 85.8853 bits (211), Expect = 7.038e-42
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 2 
Query:  233 SVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            SVCDIPP+GL M +TF GNST+IQ+MF+RVSEQF AMFRRKAFLHWY
Sbjct:  352 SVCDIPPKGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWY 398
[Close]
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB_CHLIN (Tubulin beta chain OS=Chlamydomonas incerta GN=TUBB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.038e-42
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 3 
Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230
            MWDAKNMM AADPR GRYLT SA+FRG+MSTKEVDEQM+NV+NK SSYFV+WIPNNVK
Sbjct:  293 MWDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVK 350

HSP 2 Score: 85.8853 bits (211), Expect = 7.038e-42
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 2 
Query:  233 SVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            SVCDIPP+GL M +TF GNST+IQ+MF+RVSEQF AMFRRKAFLHWY
Sbjct:  352 SVCDIPPKGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWY 398
[Close]
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB1_VOLCA (Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.038e-42
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 3 
Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230
            MWDAKNMM AADPR GRYLT SA+FRG+MSTKEVDEQM+NV+NK SSYFV+WIPNNVK
Sbjct:  293 MWDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVK 350

HSP 2 Score: 85.8853 bits (211), Expect = 7.038e-42
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 2 
Query:  233 SVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            SVCDIPP+GL M +TF GNST+IQ+MF+RVSEQF AMFRRKAFLHWY
Sbjct:  352 SVCDIPPKGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWY 398
[Close]
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB_NAEGR (Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.557e-41
Identity = 47/58 (81.03%), Postives = 54/58 (93.10%), Query Frame = 3 
Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230
            M+DAKNMM A+DPR GRYLT SAMFRG+MSTKEVDEQM+NV+NK SSYFV+WIPNN+K
Sbjct:  293 MFDAKNMMAASDPRHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIK 350

HSP 2 Score: 87.8113 bits (216), Expect = 1.557e-41
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 2 
Query:  233 SVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            SVCDIPPRGL M +TF GNST+IQ+MF+RVSEQF AMFRRKAFLHWY
Sbjct:  352 SVCDIPPRGLKMAATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWY 398
[Close]
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB5_ARATH (Tubulin beta-5 chain OS=Arabidopsis thaliana GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.557e-41
Identity = 46/58 (79.31%), Postives = 54/58 (93.10%), Query Frame = 3 
Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230
            MWD+KNMM AADPR GRYLT SA+FRG+MSTKEVDEQ++N++NK SSYFV+WIPNNVK
Sbjct:  294 MWDSKNMMCAADPRHGRYLTASAIFRGQMSTKEVDEQILNIQNKNSSYFVEWIPNNVK 351

HSP 2 Score: 88.5817 bits (218), Expect = 1.557e-41
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 2 
Query:  233 SVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            SVCDIPP+GL M +TF GNSTSIQ+MFRRVSEQF AMFRRKAFLHWY
Sbjct:  353 SVCDIPPKGLKMAATFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWY 399
[Close]
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB_EUPOC (Tubulin beta chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.619e-41
Identity = 47/58 (81.03%), Postives = 54/58 (93.10%), Query Frame = 3 
Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230
            M+DAKNMM A+DPR GRYLT SAMFRG+MSTKEVDEQM+NV+NK SSYFV+WIPNN+K
Sbjct:  293 MFDAKNMMSASDPRHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIK 350

HSP 2 Score: 85.5001 bits (210), Expect = 7.619e-41
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 2 
Query:  233 SVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            SVCDIPP+GL M STF GNST+IQ+MF+RV+EQF AMFRRKAFLHWY
Sbjct:  352 SVCDIPPKGLKMSSTFVGNSTAIQEMFKRVAEQFTAMFRRKAFLHWY 398
[Close]
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB1_CYAPA (Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.926e-41
Identity = 47/58 (81.03%), Postives = 54/58 (93.10%), Query Frame = 3 
Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230
            M+DAKNMM AADPR GRYLT SA+FRG+MSTKEVDEQM+NV+NK SSYFV+WIPNN+K
Sbjct:  293 MFDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIK 350

HSP 2 Score: 86.2705 bits (212), Expect = 9.926e-41
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 2 
Query:  227 EVSVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            + SVCDIPP+GL M +TF GNST+IQ+MF+RVSEQF AMFRRKAFLHWY
Sbjct:  350 KASVCDIPPKGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWY 398
[Close]
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB_EUPFO (Tubulin beta chain OS=Euplotes focardii PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.293e-40
Identity = 47/58 (81.03%), Postives = 54/58 (93.10%), Query Frame = 3 
Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230
            M+DAKNMM A+DPR GRYLT SAMFRG+MSTKEVDEQM+NV+NK SSYFV+WIPNN+K
Sbjct:  293 MFDAKNMMCASDPRHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIK 350

HSP 2 Score: 85.8853 bits (211), Expect = 1.293e-40
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 2 
Query:  233 SVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            SVCDIPP+GL M STF GNST+IQ+MF+RV+EQF AMFRRKAFLHWY
Sbjct:  352 SVCDIPPKGLKMSSTFIGNSTAIQEMFKRVAEQFTAMFRRKAFLHWY 398
[Close]
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB1_PHYPO (Tubulin beta-1 chain OS=Physarum polycephalum GN=BETA PE=1 SV=4)

HSP 1 Score: 103.605 bits (257), Expect = 1.684e-40
Identity = 47/58 (81.03%), Postives = 54/58 (93.10%), Query Frame = 3 
Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230
            M+DAKNMM A+DPR GRYLT SAMFRG+MSTKEVDEQM+NV+NK SSYFV+WIPNN+K
Sbjct:  293 MFDAKNMMAASDPRHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIK 350

HSP 2 Score: 84.3445 bits (207), Expect = 1.684e-40
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 2 
Query:  233 SVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            SVCDIPP+GL M  TF GNST+IQ++F+RVSEQF AMFRRKAFLHWY
Sbjct:  352 SVCDIPPKGLKMAVTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWY 398
[Close]
BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB_GIALA (Tubulin beta chain OS=Giardia lamblia PE=2 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 6.327e-40
Identity = 44/59 (74.58%), Postives = 54/59 (91.53%), Query Frame = 3 
Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVKL 233
            M+D KNMM A+DPR GRYLT +AMFRG+MSTKEVDEQM+N++NK SSYFV+WIPNN+K+
Sbjct:  293 MFDNKNMMAASDPRHGRYLTAAAMFRGRMSTKEVDEQMLNIQNKNSSYFVEWIPNNMKV 351

HSP 2 Score: 86.6557 bits (213), Expect = 6.327e-40
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 2 
Query:  227 EVSVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            +VSVCDIPPRGL M +TF GNST IQ++F+RV EQF AMFRRKAFLHWY
Sbjct:  350 KVSVCDIPPRGLKMAATFIGNSTCIQELFKRVGEQFSAMFRRKAFLHWY 398
The following BLAST results are available for this feature:
BLAST of GE213243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
TBB_CHLRE7.038e-4284.48Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinh... [more]
TBB_CHLIN7.038e-4284.48Tubulin beta chain OS=Chlamydomonas incerta GN=TUB... [more]
TBB1_VOLCA7.038e-4284.48Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3... [more]
TBB_NAEGR1.557e-4181.03Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1[more]
TBB5_ARATH1.557e-4179.31Tubulin beta-5 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB_EUPOC7.619e-4181.03Tubulin beta chain OS=Euplotes octocarinatus PE=3 ... [more]
TBB1_CYAPA9.926e-4181.03Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUB... [more]
TBB_EUPFO1.293e-4081.03Tubulin beta chain OS=Euplotes focardii PE=3 SV=1[more]
TBB1_PHYPO1.684e-4081.03Tubulin beta-1 chain OS=Physarum polycephalum GN=B... [more]
TBB_GIALA6.327e-4074.58Tubulin beta chain OS=Giardia lamblia PE=2 SV=3[more]

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Properties
Property NameValue
Genbank description92 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213243 ID=GE213243; Name=GE213243; organism=Citrus sinensis; type=EST; length=394bp
ATTACCAGGGTCCCGGCCGAGGTACCGTGCCTTGATTTTTTTTTTTTTTT
TTTTTTATGTGGGATGCCAAGAACATGATGGGTGCTGCCGACCCAAGGTT
TGGTCGTTACCTCACTGTTTCTGCCATGTTCAGGGGTAAAATGAGCACCA
AGGAAGTTGACGAGCAGATGATCAATGTTCGAAACAAATGCTCTTCCTAC
TTTGTGGATTGGATTCCAAACAATGTGAAGTTAGTGTTTGTGACATTCCT
CCCAGAGGTCTCTCCATGGTATCCACCTTCTTCGGGAACTCAACATCCAT
CCAAAAAATGTTCCGAAGAGTGAGTGAGCAATTCAAAGCTATGTTTAGGA
GAAAGGCCTTCCTTCACTGGTACCTGCCCGGGCGGCCGCTCGAA
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