GE213205

Overview
NameGE213205
Unique NameGE213205
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length374
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.612e-21
Identity = 46/71 (64.79%), Postives = 53/71 (74.65%), Query Frame = -1
Query:  138 GPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 350
            GP+P  CC GV +LN  ARTTPDRQ AC CL  AA + P+LN   AAGLP ACGV+IPYKIS ST+C+ VR
Sbjct:   47 GPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.024e-21
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = -1
Query:  141 GPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 350
            GP+P  CCNGVR LN AA+TTPDRQTAC CLK    +   +NLNNA  LPG CG+SI YKI+ + DCSK+
Sbjct:   46 GPVPPACCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.027e-20
Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = -1
Query:  141 GPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 350
            GP+   CC G+++LNAAA TTPDR+TACNCLK AA +I  +N   AAGLPG CGV IPY IS ST+C+ V
Sbjct:   47 GPLGGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.027e-20
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = -1
Query:  141 CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 332
            CC+GVRSLN AARTT DR+ ACNCLK AA  +  LN  NAA +P  CGVSIPY ISTSTDCS+V
Sbjct:   56 CCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.027e-20
Identity = 48/78 (61.54%), Postives = 55/78 (70.51%), Query Frame = -1
Query:  141 LAWSRPRCGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 374
            L ++R   GP    CC+GVRSL AAA TT DR+TACNCLK AAR I  LN  NAA +P  CGVS+PY IS S DCS+V
Sbjct:   39 LTYARGGAGP-SAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.027e-20
Identity = 48/78 (61.54%), Postives = 55/78 (70.51%), Query Frame = -1
Query:  141 LAWSRPRCGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 374
            L ++R   GP    CC+GVRSL AAA TT DR+TACNCLK AAR I  LN  NAA +P  CGVS+PY IS S DCS+V
Sbjct:   39 LTYARGGAGP-SAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.027e-20
Identity = 46/72 (63.89%), Postives = 58/72 (80.56%), Query Frame = -1
Query:  138 GPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPS-LNLNNAAGLPGACGVSIPYKISTSTDCSKVR 350
            G IP  CC+GV++LN+ A+TTPDRQ ACNC++ AAR++ S LN   AAG+P ACGV+IPYKISTST+C  VR
Sbjct:   47 GVIPPACCSGVKNLNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.990e-20
Identity = 42/71 (59.15%), Postives = 53/71 (74.65%), Query Frame = -1
Query:  138 GPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 350
            G +P  CC G++SLN+AA+TTP RQ AC C+K AA  I  +N   A+GLPG CGV+IPYKIS STDC+ V+
Sbjct:   50 GAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.990e-20
Identity = 42/71 (59.15%), Postives = 53/71 (74.65%), Query Frame = -1
Query:  138 GPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 350
            G +P  CC G++SLN+AA+TTP RQ AC C+K AA  I  +N   A+GLPG CGV+IPYKIS STDC+ V+
Sbjct:   46 GAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.099e-20
Identity = 48/78 (61.54%), Postives = 55/78 (70.51%), Query Frame = -1
Query:  141 LAWSRPRCGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 374
            L+++R   GP    CC+GVRSLN+AA TT DR+TACNCLK  A SI  LN  NAA +P  CGVSIPY IS S DCS V
Sbjct:   41 LSYARGGSGP-SAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
The following BLAST results are available for this feature:
BLAST of GE213205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
NLTP1_BRANA4.612e-2164.79Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTP_GERHY6.024e-2162.86Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTP_SPIOL1.027e-2062.86Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP_MAIZE1.027e-2070.31Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP1_ORYSJ1.027e-2061.54Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI1.027e-2061.54Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ARATH1.027e-2063.89Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLTP2_GOSHI2.990e-2059.15Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI2.990e-2059.15Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP2_ORYSI5.099e-2061.54Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank description47 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213205 ID=GE213205; Name=GE213205; organism=Citrus sinensis; type=EST; length=374bp
ATTTCGAGCGGCCGCCCGGGCAGGTACAAAGTGTAGAGAGAGACTCATAA
ATCGGACACAAAAATGTCCTTATTATTATACATTTATTCTACTCCGTCAA
CTTAAACCTGAAAATCAACGGCCCAGATTCCTGTTCACCTGACCTTAGAG
CAGTCAGTGGAGGTGCTGATCTTGTAAGGAATGCTGACTCCACAAGCTCC
TGGAAGACCAGCAGCATTATTAAGGTTGAGGCTAGGGATTGATCTGGCGG
CTTGCTTCAAGCAGTTGCATGCAGTTTGGCGGTCAGGTGTGGTTCTGGCG
GCAGCGTTGAGAGACCTGACGCCGTTGCAGCATGGCATAGGTATAGGGCC
GCACCTCGGCCGCGACCACGCTAA
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