GE213205

Overview
NameGE213205
Unique NameGE213205
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length374
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.094e-17
Identity = 37/78 (47.44%), Postives = 54/78 (69.23%), Query Frame = -1
Query:  141 LAWSRPRCGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 374
            ++++R      P+ CC+GV+ L  AA++T D+Q AC CLK  A SI  +N+   +G+PG CGVS+P+ IS STDC+KV
Sbjct:   40 ISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.040e-17
Identity = 40/71 (56.34%), Postives = 50/71 (70.42%), Query Frame = -1
Query:  141 GPIPM-PCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 350
            GP P   CCNGVR L+  A+++ DRQT CNCLK  AR I +LNLNNAA +P  C V++PY IS   DCS++
Sbjct:   46 GPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.535e-16
Identity = 40/65 (61.54%), Postives = 45/65 (69.23%), Query Frame = -1
Query:  138 CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 332
            CC GV+ L   A+TT DRQ AC CLK AA S   L+L  AA LP  C V+IPYKIS STDCSKV+
Sbjct:   50 CCGGVKGLLGQAQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.005e-16
Identity = 43/79 (54.43%), Postives = 52/79 (65.82%), Query Frame = -1
Query:  141 LAWSRPRCGPIPMPCCNGVRSLNAAARTTPDRQTACNC-LKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 374
            LA++R         C +GVRSLNAAARTT DR+ ACNC LK AA  +  LN   A+ +PG CGV +PY IS S DCS+V
Sbjct:   15 LAYARGAGAAPSASCQSGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.005e-16
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = -1
Query:  141 CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 332
            CC+GVR+LN  A ++ DR+TAC+CLK  A S  +LN+ NAA +P  CGVS+ + ISTS DCSK+
Sbjct:   57 CCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.005e-16
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = -1
Query:  141 CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 332
            CC+GVR+LN  A ++ DR+TAC+CLK  A S  +LN+ NAA +P  CGVS+ + ISTS DCSK+
Sbjct:   57 CCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.619e-16
Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = -1
Query:  141 GPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 350
            GP+P  CC GV+SL   A+TTPDR+  C CLK A + I  LN +  A LP  CGVSIPY IS ST+C  +
Sbjct:   46 GPLPSQCCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.619e-16
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = -1
Query:  141 CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 332
            CC+GVR+LN+AA TT DRQT C CLKQ   ++  L  +  AG+P  CGV+IPY IS STDCS+V
Sbjct:   55 CCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.834e-16
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = -1
Query:  138 LAWSRPRCGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 374
            ++++R      P+ CC+GV+ L  AA++T D+Q AC C+K AA     LN   AAG+P  CGVS+PY IS S DCSK+R
Sbjct:   40 ISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAGG---LNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.834e-16
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = -1
Query:  138 LAWSRPRCGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 374
            ++++R      P+ CC+GV+ L  AA++T D+Q AC C+K AA     LN   AAG+P  CGVS+PY IS S DCSK+R
Sbjct:   40 ISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAGG---LNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
The following BLAST results are available for this feature:
BLAST of GE213205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
NLTP3_HORVU3.094e-1747.44Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]
NLTP1_HORVU4.040e-1756.34Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTP2_SOLCI1.535e-1661.54Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTP_ELECO2.005e-1654.43Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTP3_ORYSJ2.005e-1656.25Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI2.005e-1656.25Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTPC_ARATH2.619e-1654.29Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP4_ORYSJ2.619e-1659.38Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
NLT43_HORVU5.834e-1648.10Non-specific lipid-transfer protein 4.3 OS=Hordeum... [more]
NLT42_HORVU5.834e-1648.10Non-specific lipid-transfer protein 4.2 OS=Hordeum... [more]

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Properties
Property NameValue
Genbank description47 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213205 ID=GE213205; Name=GE213205; organism=Citrus sinensis; type=EST; length=374bp
ATTTCGAGCGGCCGCCCGGGCAGGTACAAAGTGTAGAGAGAGACTCATAA
ATCGGACACAAAAATGTCCTTATTATTATACATTTATTCTACTCCGTCAA
CTTAAACCTGAAAATCAACGGCCCAGATTCCTGTTCACCTGACCTTAGAG
CAGTCAGTGGAGGTGCTGATCTTGTAAGGAATGCTGACTCCACAAGCTCC
TGGAAGACCAGCAGCATTATTAAGGTTGAGGCTAGGGATTGATCTGGCGG
CTTGCTTCAAGCAGTTGCATGCAGTTTGGCGGTCAGGTGTGGTTCTGGCG
GCAGCGTTGAGAGACCTGACGCCGTTGCAGCATGGCATAGGTATAGGGCC
GCACCTCGGCCGCGACCACGCTAA
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