GE213205

Overview
NameGE213205
Unique NameGE213205
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length374
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.885e-13
Identity = 35/69 (50.72%), Postives = 43/69 (62.32%), Query Frame = -1 
Query:  141 PIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 347
            P PM CCNG+ SL AAA    DRQ ACNCLK  A +IP +N + A  LP  CGV+I    S + DC+ +
Sbjct:   51 PSPM-CCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118
[Close]
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.030e-12
Identity = 34/65 (52.31%), Postives = 44/65 (67.69%), Query Frame = -1 
Query:  147 CCNGVRSLNAAARTTPDRQTACNCLKQAARSI-PSLNLNNAAGLPGACGVSIPY--KISTSTDCS 332
            CCNGVR LN    TT DR+ AC C+K AAR++ P LN + AAG+P  CG+ IPY  +I  +T C+
Sbjct:   55 CCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119
The following BLAST results are available for this feature:
BLAST of GE213205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
NLTPB_ARATH7.885e-1350.72Non-specific lipid-transfer protein 11 OS=Arabidop... [more]
NLTP7_ARATH1.030e-1252.31Non-specific lipid-transfer protein 7 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank description47 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213205 ID=GE213205; Name=GE213205; organism=Citrus sinensis; type=EST; length=374bp
ATTTCGAGCGGCCGCCCGGGCAGGTACAAAGTGTAGAGAGAGACTCATAA
ATCGGACACAAAAATGTCCTTATTATTATACATTTATTCTACTCCGTCAA
CTTAAACCTGAAAATCAACGGCCCAGATTCCTGTTCACCTGACCTTAGAG
CAGTCAGTGGAGGTGCTGATCTTGTAAGGAATGCTGACTCCACAAGCTCC
TGGAAGACCAGCAGCATTATTAAGGTTGAGGCTAGGGATTGATCTGGCGG
CTTGCTTCAAGCAGTTGCATGCAGTTTGGCGGTCAGGTGTGGTTCTGGCG
GCAGCGTTGAGAGACCTGACGCCGTTGCAGCATGGCATAGGTATAGGGCC
GCACCTCGGCCGCGACCACGCTAA
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