EY753889

Overview
NameEY753889
Unique NameEY753889
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753889_ssr661 microsatellite EY753889_ssr661:661..672. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY753889 vs. ExPASy Swiss-Prot
Match: NGA4_ARATH (B3 domain-containing transcription factor NGA4 OS=Arabidopsis thaliana GN=NGA4 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.436e-33
Identity = 74/137 (54.01%), Postives = 92/137 (67.15%), Query Frame = 2
Query:  161 IKHGEGDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGD---------RQLYIDWKAR 544
            I+    D     + S+R    R+ +F+K +TPSDVGKLNRLVIPKQHAE  FPL+      G +L+F+D  GK+WRFRYSYWNSSQSYV+TKGWSRFVKEK L AGD VSF+R    D         + ++IDW+ R
Sbjct:   10 IRASSSDHTNYFYSSER----REHMFDKVLTPSDVGKLNRLVIPKQHAENFFPLEDNQN--GTVLDFQDKNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLFAGDTVSFYRGYIPDDNAQPERRRKIMFIDWRPR 140          
BLAST of EY753889 vs. ExPASy Swiss-Prot
Match: Y8577_ORYSJ (Putative B3 domain-containing protein Os08g0157700 OS=Oryza sativa subsp. japonica GN=Os08g0157700 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.138e-30
Identity = 74/159 (46.54%), Postives = 94/159 (59.12%), Query Frame = 2
Query:   68 QIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDGVATAFGSDRVLKA--RDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWK 538
            Q+ +   +    +E EQ+       A     +  G   GV    G   V+ A  R+ +F+K VTPSDVGKLNRLV+PKQHAE+ FP  +  T     L FED  G  WRFRYSYW SSQSYV+TKGWSRFV+   L AGD VSF R+  G  + +ID++
Sbjct:   13 QVEEATEEEEEEEEEEQALGQEPAPAAAAAALVLGRRHGVVVGGGGGGVVVAAEREHMFDKVVTPSDVGKLNRLVVPKQHAERFFPAAAAGTQ----LCFEDRAGTPWRFRYSYWGSSQSYVMTKGWSRFVRAARLSAGDTVSFSRAADG--RYFIDYR 165          
BLAST of EY753889 vs. ExPASy Swiss-Prot
Match: Y6078_ORYSJ (B3 domain-containing protein Os06g0107800 OS=Oryza sativa subsp. japonica GN=Os06g0107800 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 1.258e-29
Identity = 72/136 (52.94%), Postives = 91/136 (66.91%), Query Frame = 2
Query:  167 HGEGDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSK--GLLLNFEDVTG--KVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTGPVEN 562
            HG G G     G +R    R+ +FEK VTPSDVGKLNRLV+PK +AEK+FPL   + +   G +L FED  G    WRFRYSYW+SSQSYV+TKGWSR+V++K L AGD VSF R+     +L+ID + R   V +
Sbjct:   21 HGGGGGGG---GGER----REYMFEKVVTPSDVGKLNRLVVPKHYAEKYFPLGPAARTSPAGTVLCFEDARGGDSTWRFRYSYWSSSQSYVITKGWSRYVRDKRLAAGDTVSFCRA---GARLFIDCRKRAASVSS 146          
BLAST of EY753889 vs. ExPASy Swiss-Prot
Match: RAVL3_ARATH (AP2/ERF and B3 domain-containing transcription factor At1g51120 OS=Arabidopsis thaliana GN=At1g51120 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.669e-21
Identity = 53/97 (54.64%), Postives = 68/97 (70.10%), Query Frame = 2
Query:  230 QLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGS-----TSKGLL---LNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFH 496
            QLF+K +TPSDVGKLNRLVIPK++A K+ P  S       TS+G+    + F D   + W+FRY YW SSQS+V T+GW+ FVKEKNLK  DI+ F+
Sbjct:  176 QLFQKELTPSDVGKLNRLVIPKKYAVKYMPFISDDQSEKETSEGVEDVEVVFYDRAMRQWKFRYCYWRSSQSFVFTRGWNGFVKEKNLKEKDIIVFY 272          
BLAST of EY753889 vs. ExPASy Swiss-Prot
Match: RAVL2_ARATH (AP2/ERF and B3 domain-containing transcription factor At1g50680 OS=Arabidopsis thaliana GN=At1g50680 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.792e-21
Identity = 50/100 (50.00%), Postives = 67/100 (67.00%), Query Frame = 2
Query:  230 QLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSK-----------GLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFH 496
            QLF+K +TPSDVGKLNRLVIPK++A K+ P  S   S+            + + F D   + W+FRY YW SSQS+V T+GW+ FVKEKNLK  D+++F+
Sbjct:  155 QLFQKELTPSDVGKLNRLVIPKKYAVKYMPFISADQSEKEEGEIVGSVEDVEVVFYDRAMRQWKFRYCYWKSSQSFVFTRGWNSFVKEKNLKEKDVIAFY 254          
BLAST of EY753889 vs. ExPASy Swiss-Prot
Match: VAL1_ARATH (B3 domain-containing transcription repressor VAL1 OS=Arabidopsis thaliana GN=VAL1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.070e-12
Identity = 43/105 (40.95%), Postives = 65/105 (61.90%), Query Frame = 2
Query:  233 LFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYW--NSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKA 541
            LFEK ++ SD G++ RLV+PK  AE +FP    S S+G+ L  +DV G+ W F++ YW  N+S+ YVL +G +  ++   L+AGD V+F R   G + +    KA
Sbjct:  294 LFEKTLSASDAGRIGRLVLPKACAEAYFP--PISQSEGIPLKIQDVRGREWTFQFRYWPNNNSRMYVL-EGVTPCIQSMMLQAGDTVTFSRVDPGGKLIMGSRKA 395          
BLAST of EY753889 vs. ExPASy Swiss-Prot
Match: Y7633_ORYSJ (B3 domain-containing protein Os07g0563300 OS=Oryza sativa subsp. japonica GN=Os07g0563300 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.398e-12
Identity = 40/91 (43.96%), Postives = 62/91 (68.13%), Query Frame = 2
Query:  233 LFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYW--NSSQSYVLTKGWSRFVKEKNLKAGDIVSFHR 499
            LFEK ++ SD G++ RLV+PK+ AE +FP  + S ++GL L  +D TGK W F++ +W  N+S+ YVL +G +  ++   L+AGD V+F R
Sbjct:  452 LFEKMLSASDAGRIGRLVLPKKCAEAYFP--AISQAEGLPLKVQDATGKEWVFQFRFWPNNNSRMYVL-EGVTPCIQSMQLQAGDTVTFSR 539          
BLAST of EY753889 vs. ExPASy Swiss-Prot
Match: VAL2_ARATH (B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.936e-12
Identity = 39/92 (42.39%), Postives = 60/92 (65.22%), Query Frame = 2
Query:  233 LFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYW--NSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRS 502
            LFEK ++ SD G++ RLV+PK  AE +FP    S  +GL L  +D+ GK W F++ +W  N+S+ YVL +G +  ++   L+AGD V+F R+
Sbjct:  285 LFEKVLSASDAGRIGRLVLPKACAEAYFP--PISLPEGLPLKIQDIKGKEWVFQFRFWPNNNSRMYVL-EGVTPCIQSMQLQAGDTVTFSRT 373          
BLAST of EY753889 vs. ExPASy Swiss-Prot
Match: Y7797_ORYSJ (B3 domain-containing protein Os07g0679700 OS=Oryza sativa subsp. japonica GN=Os07g0679700 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.183e-11
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 2
Query:  233 LFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYW--NSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTGPVENP 565
            LFEK ++ SD G++ RLV+PK  AE +FP    S  +G  L  +D  GK W F++ +W  N+S+ YVL +G +  ++   L+AGD V+F R   G + L + ++  T  V  P
Sbjct:  362 LFEKVLSASDAGRIGRLVLPKACAEAYFP--PISQPEGRPLTIQDAKGKEWHFQFRFWPNNNSRMYVL-EGVTPCIQSLQLQAGDTVTFSRIEPGGK-LVMGFRKATNTVSLP 470          
BLAST of EY753889 vs. ExPASy Swiss-Prot
Match: Y2558_ORYSJ (B3 domain-containing protein Os02g0455800 OS=Oryza sativa subsp. japonica GN=Os02g0455800 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.872e-11
Identity = 43/107 (40.19%), Postives = 60/107 (56.07%), Query Frame = 2
Query:  206 DRVLKARDQLFEKAVTPSDV-GKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFED--VTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDR 517
            D+ +   + LFEK + PSD+      L IP++H  K F +         ++ F+D  V GK+W FRY  W S+  + LTKGW  FV+EK LKAGD +SF R +   R
Sbjct:   19 DKEVLEMEYLFEKFLMPSDLCSNTEWLGIPEEHVRK-FGMMLEDRDGYSVIFFQDGVVPGKLWCFRY--WKSNGVHGLTKGWRCFVREKGLKAGDTISFFRGSACGR 122          
The following BLAST results are available for this feature:
BLAST of EY753889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
NGA4_ARATH1.436e-3354.01B3 domain-containing transcription factor NGA4 OS=... [more]
Y8577_ORYSJ1.138e-3046.54Putative B3 domain-containing protein Os08g0157700... [more]
Y6078_ORYSJ1.258e-2952.94B3 domain-containing protein Os06g0107800 OS=Oryza... [more]
RAVL3_ARATH3.669e-2154.64AP2/ERF and B3 domain-containing transcription fac... [more]
RAVL2_ARATH4.792e-2150.00AP2/ERF and B3 domain-containing transcription fac... [more]
VAL1_ARATH1.070e-1240.95B3 domain-containing transcription repressor VAL1 ... [more]
Y7633_ORYSJ1.398e-1243.96B3 domain-containing protein Os07g0563300 OS=Oryza... [more]
VAL2_ARATH6.936e-1242.39B3 domain-containing transcription repressor VAL2 ... [more]
Y7797_ORYSJ1.183e-1138.05B3 domain-containing protein Os07g0679700 OS=Oryza... [more]
Y2558_ORYSJ5.872e-1140.19B3 domain-containing protein Os02g0455800 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-008-B02-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753889 ID=EY753889; Name=EY753889; organism=Citrus sinensis; type=EST; length=920bp
CCGGNATTCCAGAGCCGACCCACGCGTCCGATCGAAATGGCTTTCTTGAG
CTCCCACTCCAAGTCCGCAGATCGTCGATATGCTGAGGAAGCACACTTAC
AACGACGAGCTCGAGCAGAGCAAAAGAAACTACGGCCTCGATGCCAACGG
CAAGCGTGTAATCAAACACGGGGAAGGTGATGGTGTTGCCACTGCCTTCG
GTTCAGACCGGGTCCTTAAAGCGCGTGACCAGCTTTTTGAAAAGGCCGTT
ACCCCAAGTGACGTGGGGAAGCTGAACCGGCTCGTGATACCCAAGCAGCA
CGCGGAGAAGCACTTCCCTTTACAGAGCGGAAGCACTTCCAAGGGACTGC
TCTTGAACTTTGAGGATGTCACCGGCAAAGTTTGGAGGTTTAGGTACTCC
TACTGGAACAGCAGTCAAAGCTACGTTTTGACCAAAGGGTGGAGCCGGTT
CGTCAAGGAGAAGAATTTGAAAGCCGGTGACATTGTTAGCTTTCACAGAT
CGACCGGTGGGGATAGGCAGCTTTACATTGATTGGAAAGCCAGAACAGGA
CCGGTCGAGAACCCGGTCGAGCCGGTCCAGATGATGAGGCTATTTGGGGT
CAACATTTTCAAAATTCCTGGGAATGGTCTTGTTGGTGTCNATAAGATTG
GGTGGCACATTAATAATAATAACGACGGCCAAAGGCTTANAGAAATGGAG
CTCTTGTCTCTAGAGTGCCAGCAAAAACAAGAATGATTGGAGCTTCGAAA
CACCTTTTTTCTTTTTCTTCTTTTTTGAAATCCTATTCCTTGGGGGAATT
TTCCTTTTCTCTTTTCCTTTGGGGGTTTTGGGATTTTGAGGAGTTTAAGG
GGGAAAAAAAACTGGGGAAGGTGGGGCCCCTTTTTGCAGTTGCAAAGGAA
AGGAAGGGTTAATTGTAAAT
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