EY753874

Overview
NameEY753874
Unique NameEY753874
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753874 vs. ExPASy Swiss-Prot
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 31/80 (38.75%), Postives = 50/80 (62.50%), Query Frame = 2
Query:  158 ADNKLIVVDFTDSWCPPCMLMYPILSELAKKLPAVIFLKVDADELKSVSEEWAVEAMPTFVLTKECKLLQRIVGTKKDEL 397
            A +KL+VVDF+ +WC PC ++ P    L++K   V+FL+VD D+ + V+ E  V+ MPTF   K+ + +    G  K++L
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKL 97          
BLAST of EY753874 vs. ExPASy Swiss-Prot
Match: TRXL4_ARATH (Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 35/99 (35.35%), Postives = 53/99 (53.54%), Query Frame = 2
Query:  101 QVISCHTVES*NYQLQKGIADNKLIVVDFTDSWCPPCMLMYPILSELAKKLPAVIFLKVDADELKSVSEEWAVEAMPTFVLTKECKLLQRIVGTKKDEL 397
            +V+   + ES N+ + +    N  IV  FT  WC P + M     ELA      +FL VD DE+K V+ +  V+AMPTF+  K+   + ++VG   DE+
Sbjct:    3 RVVKIDSAESWNFYVSQAKNQNCPIVAHFTALWCIPSVFMNSFFEELAFNYKDALFLIVDVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEI 101          
BLAST of EY753874 vs. ExPASy Swiss-Prot
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 30/80 (37.50%), Postives = 50/80 (62.50%), Query Frame = 2
Query:  158 ADNKLIVVDFTDSWCPPCMLMYPILSELAKKLPAVIFLKVDADELKSVSEEWAVEAMPTFVLTKECKLLQRIVGTKKDEL 397
            A +KL+VVDF+ +WC PC ++ P    L++K   V+F++VD D+ K ++ E  V+ MPTF   K+ + +    G  K++L
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDDCKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKL 97          
BLAST of EY753874 vs. ExPASy Swiss-Prot
Match: THIO_BOVIN (Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 33/89 (37.08%), Postives = 53/89 (59.55%), Query Frame = 2
Query:  137 YQLQKGI--ADNKLIVVDFTDSWCPPCMLMYPILSELAKKLPAVIFLKVDADELKSVSEEWAVEAMPTFVLTKECKLLQRIVGTKKDEL 397
            Y  Q+ +  A  KL+VVDF+ +WC PC ++ P    L++K   V+FL+VD D+ + V+ E  V+ MPTF   K+ + +    G  K++L
Sbjct:    9 YAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKL 97          
BLAST of EY753874 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 30/77 (38.96%), Postives = 47/77 (61.04%), Query Frame = 2
Query:  167 KLIVVDFTDSWCPPCMLMYPILSELAKKLPAVIFLKVDADELKSVSEEWAVEAMPTFVLTKECKLLQRIVGTKKDEL 397
            K+I++DF  +WC PC  + P+  ELA     +IF KVD DE + +  ++ V+ MPTF+ TK    ++ + G  +DEL
Sbjct:   28 KIIILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDEL 104          
BLAST of EY753874 vs. ExPASy Swiss-Prot
Match: THIO_OPHHA (Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 3.620e-11
Identity = 29/80 (36.25%), Postives = 48/80 (60.00%), Query Frame = 2
Query:  158 ADNKLIVVDFTDSWCPPCMLMYPILSELAKKLPAVIFLKVDADELKSVSEEWAVEAMPTFVLTKECKLLQRIVGTKKDEL 397
            A +KLIVVDF+ +WC PC ++ P    + +K P V+F+++D D+ + V+    V+ MPTF   K  + +    G  K++L
Sbjct:   18 AGSKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKL 97          
BLAST of EY753874 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.620e-11
Identity = 30/88 (34.09%), Postives = 50/88 (56.82%), Query Frame = 2
Query:  134 NYQLQKGIADNKLIVVDFTDSWCPPCMLMYPILSELAKKLPAVIFLKVDADELKSVSEEWAVEAMPTFVLTKECKLLQRIVGTKKDEL 397
            +++ +   A  KL+VVDF+ +WC PC ++ P    L  K   V+F+++D D+ + V+    V+ MPTF   K  K +Q   G  K++L
Sbjct:   10 DFEAELKAAGEKLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKL 97          
BLAST of EY753874 vs. ExPASy Swiss-Prot
Match: TRXF_PEA (Thioredoxin F-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 30/84 (35.71%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  158 ADNKLIVVDFTDSWCPPCMLMYPILSELAKKLPAVIFLKVDAD-ELKSVSEEWAVEAMPTFVLTKECKLLQRIVGTKKDELLLA 406
            A +K +V+D    WC PC ++ P+  EL++K   V+FLK+D + + KS+++E  ++ +PTF + K+ K+++ + G K D+L+ A
Sbjct:   92 AGDKTVVLDMFTKWCGPCKVIAPLYEELSQKYLDVVFLKLDCNQDNKSLAKELGIKVVPTFKILKDNKIVKEVTGAKFDDLVAA 175          
BLAST of EY753874 vs. ExPASy Swiss-Prot
Match: THIO_CHLMU (Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 2
Query:  170 LIVVDFTDSWCPPCMLMYPILSELAKKLPAVIFLKVDADELKSVSEEWAVEAMPTFVLTKECKLLQRIVGTK-KDELL 400
            L++VDF   WC PC ++ P+L  LA +LP V  LK+D D     +E++ V ++PT +L K+ K ++R VG K KD L+
Sbjct:   18 LVLVDFFAEWCGPCKMLTPVLEALAAELPYVTILKLDIDASPRPAEQFGVSSIPTLILFKDGKEVERSVGLKDKDSLV 95          
BLAST of EY753874 vs. ExPASy Swiss-Prot
Match: THIO_ECHGR (Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 32/82 (39.02%), Postives = 50/82 (60.98%), Query Frame = 2
Query:  143 LQKGIADNKLIVVDFTDSWCPPCMLMYPILSELAKKLPAVIFLKVDADELKSVSEEWAVEAMPTFVLTKECKLLQRIVGTKK 388
            L+  I  +KL+V DF  +WC PC  + P L  +AK+   VIF+K+D DE + V+E++ V AMPT ++ K    +  +VG  +
Sbjct:   15 LEAAIKGDKLLVCDFFATWCGPCKSLAPKLDAMAKENEKVIFVKLDVDECQDVAEKYRVTAMPTLIVFKNGCEIGHVVGANE 96          
The following BLAST results are available for this feature:
BLAST of EY753874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
THIO_CALJA2.122e-1138.75Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3[more]
TRXL4_ARATH2.772e-1135.35Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g... [more]
THIO_RABIT2.772e-1137.50Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 S... [more]
THIO_BOVIN2.772e-1137.08Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3[more]
THIO1_CAEEL2.772e-1138.96Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]
THIO_OPHHA3.620e-1136.25Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3[more]
THIO_CHICK3.620e-1134.09Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2[more]
TRXF_PEA4.728e-1135.71Thioredoxin F-type, chloroplastic OS=Pisum sativum... [more]
THIO_CHLMU4.728e-1142.31Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV... [more]
THIO_ECHGR8.065e-1139.02Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-007-H09-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753874 ID=EY753874; Name=EY753874; organism=Citrus sinensis; type=EST; length=596bp
GNTCCGGNATTCCAAAGCCGACCCACGCGTCCGATATTAAATATATCAGA
ACAGACAACTAATTGAACTTGGGATCATAATTAAGATGGCCGAGGAGGGA
CAAGTGATCAGCTGCCACACTGTTGAATCCTGAAACTATCAGCTCCAAAA
GGGCATTGCGGACAACAAACTGATAGTGGTGGATTTTACGGATTCATGGT
GCCCGCCATGCATGTTGATGTATCCAATTTTGAGTGAATTGGCAAAGAAG
CTGCCCGCTGTCATATTCTTGAAAGTGGATGCTGATGAATTGAAGTCCGT
CTCTGAGGAATGGGCTGTGGAAGCCATGCCTACCTTTGTACTGACAAAAG
AATGCAAACTCCTGCAGAGGATTGTGGGAACGAAAAAAGATGAACTGCTG
CTGGCTGACCAAAACACCCAACAACTGTTGAGAATGCAACTACTGCTAAT
GCTTGATTGATGCATACATGAATCTCATTGCTCTTTTATTGAAAGGTGCG
TGTTCGTGGATGCTTAATGTAACAATATGGTACCATGTTTAACAGGCCTG
TATATACGAATAAATGACAATCTTCTAGCACACAAAAGAACTACTA
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