EY753862

Overview
NameEY753862
Unique NameEY753862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753862_ssr88 microsatellite EY753862_ssr88:88..99. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6299 contig Csv1_Contig6299:108..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI1_PONAB (Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo abelii GN=IDI1 PE=2 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 5.322e-62
Identity = 125/232 (53.88%), Postives = 165/232 (71.12%), Query Frame = 1
Query:  121 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPWFKLVVDNFLXKGWDHLEKGTLNEVIDIETFH 816
            M +  TD  +D  Q +L+ E  CIL+DEND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+T P  +TNTCCSHPL    EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YKA SDG WGEHE+DY+L + ++V++NP+P+E+  Y YV++ +LKELL+KA +GE  +K++PWFK++ + FL K WD+L    LN+ +D E  +
Sbjct:    1 MPEINTDH-LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITLPGCFTNTCCSHPLSNPGELEENDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWFKIIAETFLFKWWDNLNH--LNQFVDHEKIY 225          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI1_MESAU (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesocricetus auratus GN=IDI1 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.641e-61
Identity = 120/223 (53.81%), Postives = 163/223 (73.09%), Query Frame = 1
Query:  148 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPWFKLVVDNFLXKGWDHLEKGTLNEVIDIETFH 816
            +D  Q +L+ E  CIL+DEND  +G + K NCHL E I+   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TN+CCSHPL    EL E +A+GV+ AAQR+L  ELGI  E+V  +E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y YV++ +LKEL++KA +GE  +KL+PWFK++VD FL K WD+L    L++ +D E  H
Sbjct:    9 LDEQQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLSNPGELEENDAIGVKRAAQRRLKAELGIPLEEVDPNEMHYLTRIYYKAQSDGIWGEHEIDYILFLKKNVTLNPDPNEIKSYCYVSKEELKELVKKAASGE--VKLTPWFKIIVDTFLFKWWDNLNH--LSQFVDHEKIH 225          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI1_MOUSE (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus musculus GN=Idi1 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.236e-60
Identity = 117/223 (52.47%), Postives = 162/223 (72.65%), Query Frame = 1
Query:  148 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPWFKLVVDNFLXKGWDHLEKGTLNEVIDIETFH 816
            +D  Q +L+ E  CIL+DEND  +G + K NCHL E I+   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TN+CCSHPL    EL E NA+GV+ AA+R+L  ELGI  E+V ++E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y YV++ +++E+L+KA +GE  +KL+PWFK++ D FL K WD+L    L+  +D E  H
Sbjct:    9 LDEKQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLSNPGELEENNAIGVKRAAKRRLKAELGIPLEEVDLNEMDYLTRIYYKAQSDGIWGEHEVDYILFLRKNVTLNPDPNEIKSYCYVSKEEVREILKKAASGE--IKLTPWFKIIADTFLFKWWDNLNH--LSPFVDHEKIH 225          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI1_RAT (Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattus norvegicus GN=Idi1 PE=2 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 4.981e-60
Identity = 117/225 (52.00%), Postives = 161/225 (71.56%), Query Frame = 1
Query:  142 AGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPWFKLVVDNFLXKGWDHLEKGTLNEVIDIETFH 816
            + +D  Q +L+ E  CIL+DEND  +G + K NCHL E I+   L+HRAFSVFLFN++ +LLLQQRS  K+TFP  +TN+CCSHPL    EL E +A+GV+ AAQR+L  ELGI  E+V ++E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y YV++ +LKE+L+K   GE  +KL+PWFK++ D FL K WD+L    L+  +D E  H
Sbjct:    7 SNLDEKQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLIHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLNNPGELEENDAMGVKRAAQRRLKAELGIPLEEVDLNEMNYLTRIYYKAQSDGIWGEHEIDYILFLRKNVTLNPDPNEIKSYCYVSKEELKEILKKEARGE--IKLTPWFKIIADAFLFKWWDNLNH--LSPFVDHEKIH 225          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI1_SCHPO (Isopentenyl-diphosphate Delta-isomerase OS=Schizosaccharomyces pombe GN=idi1 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.578e-50
Identity = 109/215 (50.70%), Postives = 137/215 (63.72%), Query Frame = 1
Query:  151 DAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE---LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPWFKLVVDNFLXKGW---DHLEK 777
            D  Q RLM E+ CI+VDEND  + +  K  CHLME I    LLHRAFS+F+F+ +  LLLQQR+  K+TFP +WTNTCCSHPL    E    + E   GV+NAAQRKL  ELGI A+ +P D+F  L RI Y APS G WGEHE+DY+LF    V ++ NP+EV  YKYV   +LKE+      G      +PWFKL+ ++F+ K W   DH  K
Sbjct:   11 DEEQLRLM-EEVCIVVDENDVPLRYGTKKECHLMENINK-GLLHRAFSMFIFDEQNRLLLQQRAEEKITFPSLWTNTCCSHPLDVAGERGNTLPEAVEGVKNAAQRKLFHELGIQAKYIPKDKFQFLTRIHYLAPSTGAWGEHEIDYILFFKGKVELDINPNEVQAYKYVTMEELKEMFSDPQYG-----FTPWFKLICEHFMFKWWQDVDHASK 218          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI2_HUMAN (Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo sapiens GN=IDI2 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.360e-49
Identity = 102/218 (46.79%), Postives = 146/218 (66.97%), Query Frame = 1
Query:  136 TDAGMDAVQRRLM--FEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPWFKLVVDNFLXKGWDHLEKGT 783
            +D  +D V RR +   E+  I+VDEND+V+G + K NCHL E IE   LLHRAFSV LFN+K  +L+QQRS TKVTFP  +T++C SHPLY  +EL E++A+GVR AAQR+L  ELGI  E +  ++   +    +KA SD  WGEHE+ YLL + ++V++NP+P E     Y+++ +L ELL +   GE  +K++PW + + + FL + W HL+  T
Sbjct:    2 SDINLDWVDRRQLQRLEEMLIVVDENDKVIGADTKRNCHLNENIEK-GLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNVTLNPDPSETKSILYLSQEELWELLEREARGE--VKVTPWLRTIAERFLYRWWPHLDDVT 216          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI1_PHARH (Isopentenyl-diphosphate Delta-isomerase OS=Phaffia rhodozyma GN=IDI PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 5.167e-49
Identity = 108/220 (49.09%), Postives = 138/220 (62.73%), Query Frame = 1
Query:  151 DAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIES-LNLLHRAFSVFLFN-SKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPWFKLVVDNFLXKGWDHL-----EKGTLN 789
            D  Q RLM E+ CILV+ +D   G  +K  CHLM  I +  +LLHRAFSVFLF  S   LLLQ+R+  K+TFP +WTNTCCSHPL  + E+ EEN +GVR AA RKL  ELG+     P D FT L RI Y APSDG WGEHE+DY+LF         NP+EV++ +YV + +L+ +       +ES   +PWFKL+  +FL   WD L     EKG ++
Sbjct:   23 DEEQVRLM-EERCILVNPDDVAYGEASKKTCHLMSNINAPKDLLHRAFSVFLFRPSDGALLLQRRADEKITFPGMWTNTCCSHPLSIKGEVKEENQIGVRRAASRKLEHELGVPTSSTPPDSFTYLTRIHYLAPSDGLWGEHEIDYILFSTTPTEHTGNPNEVSDTRYVTKPELQAMFE-----DESNSFTPWFKLIARDFLFGWWDQLLARRNEKGEVD 236          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI_DICDI (Isopentenyl-diphosphate Delta-isomerase OS=Dictyostelium discoideum GN=ipi PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.316e-47
Identity = 100/213 (46.95%), Postives = 150/213 (70.42%), Query Frame = 1
Query:  145 GMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLY-RESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS--DGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPWFKLVVDNFLXKGWDHL 771
            G + +Q  LM ++ECI+VD +D+ +   +K   HLM  I +  LLHRAFS+FLFN + +LLLQQR+  K+TFP  WTNT CSHPL+   SEL+EENA GV+ AA+RKL  ELG+  + V +D+FT + +I YK+ S  D +WGEHE+D++L + +D +++N  P+EV +YKYV++ +L +L +  D G+  +K++PWF+L+  N L   W++L
Sbjct:   15 GHNEIQIELM-KEECIVVDNDDKPIRPGSKKETHLMVNINN-GLLHRAFSIFLFNGEGKLLLQQRALEKITFPGYWTNTVCSHPLWIVGSELVEENAQGVKIAAKRKLNHELGVPLDQVNIDDFTFMTKIHYKSESKEDPQWGEHEIDHILIMQKDGITINAEPNEVMDYKYVSQEELDQLFKDEDEGK--VKVTPWFRLIALNHLKPWWNNL 223          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI1_YEAST (Isopentenyl-diphosphate Delta-isomerase OS=Saccharomyces cerevisiae GN=IDI1 PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 1.008e-44
Identity = 105/238 (44.12%), Postives = 146/238 (61.34%), Query Frame = 1
Query:  133 TTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESEL-----IEENALGVRNAAQRKLLDELGICAEDVPV-DEFTPLGRILYKAPSDGKWGEHELDYLLF----IVRDVSVNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPWFKLVVDNFLXKGWDHLEKGTLNEVIDIETFH 816
            T  +G D  Q +LM E+ CI++D +D  +G   K  CHLME IE   LLHRAFSVF+FN + ELLLQQR+  K+TFP +WTNTCCSHPL  + EL     +++   G   AA RKL  ELGI  ++     +F  L RI Y APS+  WGEHE+DY+LF       +++VNPN +EV ++K+V+   LK +       + S K +PWFK++ +N+L   W+ L+   L+EV +    H
Sbjct:   57 TCFSGHDEEQIKLMNEN-CIVLDWDDNAIGAGTKKVCHLMENIEK-GLLHRAFSVFIFNEQGELLLQQRATEKITFPDLWTNTCCSHPLCIDDELGLKGKLDDKIKGAITAAVRKLDHELGIPEDETKTRGKFHFLNRIHYMAPSNEPWGEHEIDYILFYKINAKENLTVNPNVNEVRDFKWVSPNDLKTMF-----ADPSYKFTPWFKIICENYLFNWWEQLD--DLSEVENDRQIH 285          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI_ERWCT (Isopentenyl-diphosphate Delta-isomerase OS=Erwinia carotovora subsp. atroseptica GN=idi PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.732e-20
Identity = 64/184 (34.78%), Postives = 95/184 (51.63%), Query Frame = 1
Query:  184 ECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI-CAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPWFKL 732
            E +LVDEND+  G   K   H+  +      LHRA +V++FNS+ +LLLQQR+  K     +W+NTCCSHP   E  L          AA R+L +E+G+ CA        TP+  + Y+   D    EHEL ++ F V D     NPDEV+ Y+Y +  ++ + +          + + WF+L
Sbjct:    5 EVVLVDENDKPTGVMEKQEAHVKGE------LHRAITVYIFNSRQQLLLQQRAEEKYHSGGLWSNTCCSHPAPGEETL---------QAAHRRLYEEMGLRCA-------LTPMFTLTYRLQLDNGLIEHELGHVYFGVTDDVPQINPDEVSSYEYQSIDEITQRMMMTPE-----QFTAWFQL 161          
The following BLAST results are available for this feature:
BLAST of EY753862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
IDI1_PONAB5.322e-6253.88Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo... [more]
IDI1_MESAU2.641e-6153.81Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesoc... [more]
IDI1_MOUSE2.236e-6052.47Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus m... [more]
IDI1_RAT4.981e-6052.00Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattu... [more]
IDI1_SCHPO3.578e-5050.70Isopentenyl-diphosphate Delta-isomerase OS=Schizos... [more]
IDI2_HUMAN1.360e-4946.79Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo ... [more]
IDI1_PHARH5.167e-4949.09Isopentenyl-diphosphate Delta-isomerase OS=Phaffia... [more]
IDI_DICDI6.316e-4746.95Isopentenyl-diphosphate Delta-isomerase OS=Dictyos... [more]
IDI1_YEAST1.008e-4444.12Isopentenyl-diphosphate Delta-isomerase OS=Sacchar... [more]
IDI_ERWCT1.732e-2034.78Isopentenyl-diphosphate Delta-isomerase OS=Erwinia... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-007-G06-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753862 ID=EY753862; Name=EY753862; organism=Citrus sinensis; type=EST; length=887bp
CGTCTATTTTTCTCCTCTTCCCATTTCGCCCCTACGGTTTCTTCGATTCG
CAGGCCTCTGTCCTTGAGAGGTGCCTCTCGTTCTAGCTCTTCTTCTTCTT
CCGCTCGCGCAATCAGCACTATGGGTGACGCTACTACTGATGCCGGCATG
GACGCTGTCCAGCGCCGCCTCATGTTTGAAGACGAATGCATTTTGGTGGA
TGAGAATGATCGCGTTGTTGGTCATGAAAACAAATACAACTGTCACTTGA
TGGAAAAGATTGAGTCTTTGAATTTGCTACACAGAGCCTTCAGCGTATTT
TTGTTTAACTCAAAATATGAGCTACTCCTTCAGCAACGCTCTGGAACCAA
AGTTACCTTCCCTCTTGTGTGGACTAACACCTGCTGCAGCCATCCTCTGT
ACCGTGAATCTGAGCTTATTGAGGAGAACGCTCTTGGGGTGAGGAATGCT
GCACAAAGAAAGCTTTTGGATGAGCTGGGCATTTGTGCTGAAGATGTGCC
AGTTGATGAGTTCACTCCACTGGGTCGCATTCTGTACAAGGCCCCTTCTG
ATGGCAAGTGGGGGGAGCATGAACTTGACTACTTACTTTTCATTGTCCGA
GATGTTAGTGTTAACCCAAATCCTGATGAAGTAGCCGAGTATAAATATGT
CAACCGGGGACAGTTAAAAGAGCTTTTGAGGAAAGCAGATGCTGGAGAAG
AAAGTTTGAAGCTGTCTCCTTGGTTCAAACTGGTTGTGGACAATTTCTTG
NTCAAGGGGTGGGATCACCTCGAAAAAGGTACCCTTAACGAAGTCATTGA
CATTGAGACCTTTCACAGTTGACTTAATAAAGCCGCAGCCCTTGAAACCC
ANTATTTGGGGGCGGAACCTGTATTCCATAAGTTGGG
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