EY753862

Overview
NameEY753862
Unique NameEY753862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753862_ssr88 microsatellite EY753862_ssr88:88..99. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6299 contig Csv1_Contig6299:108..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI1_AZOSE (Isopentenyl-diphosphate Delta-isomerase 1 OS=Azoarcus sp. (strain EbN1) GN=idi1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.262e-20
Identity = 68/192 (35.42%), Postives = 95/192 (49.48%), Query Frame = 1
Query:  178 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI-CAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPWFKLVVDNFL 750
            ED+ ILVDEND  +G E K   H          LHRA S+F+F+S   LLLQ+R+ +K     +W+NTCCSHP  RE             AA+R+L +E+GI C  DV           +Y+A       E+E D++ F   D    PNPDE  ++K+V+   L     +AD  E     S W +  +D  +
Sbjct:    2 EDQVILVDENDTEIGVEGKMIAHRSGS------LHRAISIFIFDSADRLLLQKRAASKYHSAGLWSNTCCSHPRPREE---------CARAARRRLREEMGIACELDVKFG-------FVYRAVLTNHLIENEFDHVFFGRHDGDPVPNPDEAEDWKWVDLAWL-----RADLNERPHAYSFWLEACIDRVI 166          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI_NOCFA (Isopentenyl-diphosphate Delta-isomerase OS=Nocardia farcinica GN=idi PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.266e-19
Identity = 67/185 (36.22%), Postives = 92/185 (49.73%), Query Frame = 1
Query:  193 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWG--EHELDYLLFIVRDVSVNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPWFKLVVD 741
            LVDE  R VG      C + E       LHRAFSV LF++   +LLQQR+  K  FPL+W NTCC HP   ES         V  AA  +L +ELG+ A        T +G   Y+A +D   G  EHE D++L    D + +P+P EVA  ++V   ++     +A    E    +PW   V++
Sbjct:    5 LVDEAGRAVGA-----CPVAEAHRDPGKLHRAFSVLLFDTAGRVLLQQRAAVKTRFPLLWANTCCGHPAPGES---------VEAAAATRLAEELGVAA------GLTEVGVFRYRA-ADTATGRVEHEWDHVLIGTLDTTPHPDPAEVANLRWVRPAEV-----RAKLAAEPAAYTPWLAEVLE 163          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI_SERP5 (Isopentenyl-diphosphate Delta-isomerase OS=Serratia proteamaculans (strain 568) GN=idi PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.504e-19
Identity = 62/187 (33.16%), Postives = 93/187 (49.73%), Query Frame = 1
Query:  178 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPWFKLVV 738
            ++  ILVD +D  +G ++K   H         LLHRAFS+F+F+S+  LLLQQR+ +K     +WTN+CC HP + ES L          AAQR+L +E+G  AE   V  FT      Y+A   G   EHE D++   + D      P+E   + + +  QL +     +      K + WF  ++
Sbjct:    2 DEMLILVDADDNAIGSQSKTRVHQQ------GLLHRAFSIFIFDSQGRLLLQQRAFSKYHSAGLWTNSCCGHPRWGESTLA---------AAQRRLQEEMGFSAELQQVSSFT------YQAAVPGDLIEHEFDHIYVGLFDGKPQGAPEEAHSWSWTDIQQLTD-----ETTRNPEKFTVWFLTIM 162          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI1_PHOLL (Isopentenyl-diphosphate Delta-isomerase 1 OS=Photorhabdus luminescens subsp. laumondii GN=idi1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.160e-18
Identity = 66/197 (33.50%), Postives = 99/197 (50.25%), Query Frame = 1
Query:  181 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPWFKLVVDNFLXKGWDHL 771
            +  +LVDEND  VG  NK + HL     + + LHRAFS F+ NSK E+ +QQR+ +K+ +P  W+N+ CSHP   E          + +A  R+  +ELGI   + P  +F  L +  YK        EHEL ++  +  D     NP EV+   ++N   ++E +      EE    +PWFK    + L   +D L
Sbjct:    2 ENVVLVDENDNRVGCINKIDAHL-----NGDHLHRAFSCFIINSKNEVYIQQRAQSKLLWPGYWSNSYCSHPRPDEE---------ISHAVMRRAEEELGIVINEEP--KF--LYKFQYKEKYKDVGYEHELCHVFVVFTDTPPTENPKEVSAGFFINIKDVQEYIHN---NEEF--CTPWFKKEWADILQNHFDKL 175          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI2_PHOLL (Isopentenyl-diphosphate Delta-isomerase 2 OS=Photorhabdus luminescens subsp. laumondii GN=idi2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.215e-17
Identity = 61/184 (33.15%), Postives = 96/184 (52.17%), Query Frame = 1
Query:  190 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPWFKLVVD 741
            +LVD++D  +G   K + H         +LHRAFS+F+F++K  LLLQ+R+ TK     +WTN+CC HP  R  E +E        AA R+L +E+G    D P+ +   +   +Y A       E+E D++     D     N DEV++YK+VN  +L+ L+  A         + WFK +++
Sbjct:    6 VLVDKHDNPIGSAGKADIH------QKGMLHRAFSIFVFDNKGNLLLQKRAATKYHSAGLWTNSCCGHP--RVGEALEA-------AAHRRLGEEMGF---DCPLKK---VSSFIYHAILPNNLIEYEYDHVFIGRFDKEPIINLDEVSDYKWVNLLKLRALINNAPD-----VYTVWFKKIIN 163          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI2_AZOSE (Isopentenyl-diphosphate Delta-isomerase 2 OS=Azoarcus sp. (strain EbN1) GN=idi2 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.162e-16
Identity = 58/169 (34.32%), Postives = 84/169 (49.70%), Query Frame = 1
Query:  178 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRGQLKELLRK 684
            ED+ ILVDE+D  VG   K   H          LHRA S+F+F+S   L+LQ+R+  K     +W+NTCCSHP   E            +AA+R+L +E+G+  E      F      +Y+        EHE D++ F   D     NPDE  ++K+V+  +L   +RK
Sbjct:    2 EDQVILVDEHDNKVGFAGKMAAH------QRGALHRAISIFVFDSHSRLMLQRRAAGKYHSGGLWSNTCCSHPRPNEES---------ADAARRRLREEMGVDCELKKAFSF------VYRTKFGSGLIEHEFDHVFFGNHDGRPVLNPDEADDWKWVDLTELTVDVRK 149          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI_BURM1 (Isopentenyl-diphosphate Delta-isomerase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=idi PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.982e-16
Identity = 61/188 (32.45%), Postives = 96/188 (51.06%), Query Frame = 1
Query:  178 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPWFKLVVD 741
            E+  ILVD +DR +G   K   H         LLHRAFS+F+F+S   LLLQQR+  K     +W+NTCC HP  RE+         + +A +R+L +E+G   E  PVD       ++Y+A  +    EHE  ++     D +V P+  EVA +++++   L E +      +E    + WF  +++
Sbjct:    2 EERLILVDTDDRPIGICEKMRAH------HEGLLHRAFSIFVFDSAGRLLLQQRALNKYHSGGLWSNTCCGHPRPREA---------LPDAVRRRLGEEMGFACELRPVD------ALVYRARFENDLIEHEFVHIHVGRFDGTVAPDFAEVAAWRWIDVPTLLEWM-----ADEPSAFTVWFHCMIE 163          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI_PHOPR (Isopentenyl-diphosphate Delta-isomerase OS=Photobacterium profundum GN=idi PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.284e-15
Identity = 61/194 (31.44%), Postives = 99/194 (51.03%), Query Frame = 1
Query:  169 LMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFI-VRDVSVNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPWFKLVV 738
            ++ E++ +LVD+  R +G + K   H          LH AFSV L+       E L+QQR+  K     +WTNTCCSHP  R+ E +E+       A  R+L +E+GI    V ++    +   +Y+A  D +  EHE D++L     ++++ PN +EV  Y++ ++  L+  L  AD  E     + WF  V+
Sbjct:    1 MIIEEQVVLVDQQGRALGLQEKMQAHRD------GALHLAFSVLLYRETTQGIEFLMQQRALGKYHSGGLWTNTCCSHP--RQGETLEQ-------AGLRRLTEEMGI----VGLESLDDIASFVYRAELDNQLIEHEWDHVLIANGTELAIIPNSEEVKSYRWWSKADLE--LGLADTPE---LFTAWFPQVL 170          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI_STRGG (Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=idi PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.191e-15
Identity = 61/184 (33.15%), Postives = 83/184 (45.11%), Query Frame = 1
Query:  193 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGK-WGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPWFKLVVD 741
            LVDEN   +G   K   H     ++   LHRAFSVFLF+ +  LLLQ+R+  K   P VW+NTCC HP   E+            AA R+  +ELG+             G + Y  P       E E ++L   +   +  P+P+EV E  +V   +L E   KA         S WF  V+D
Sbjct:   24 LVDENGTTIGTAEKLAAH-----QAPGQLHRAFSVFLFDEQGRLLLQRRALGKYHSPGVWSNTCCGHPYPGEAPFA---------AAARRTHEELGLSP-----SLLAEAGTVRYNHPDPASGLVEQEFNHLFVGLAQTAPKPDPEEVGETAFVTAAELAERHAKA-------PFSAWFMTVLD 181          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI_HALHL (Isopentenyl-diphosphate Delta-isomerase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=idi PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.881e-15
Identity = 60/197 (30.46%), Postives = 91/197 (46.19%), Query Frame = 1
Query:  181 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVN---PNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPWFKLVVDNFLXKGW 762
            +  ++VD   + VG E K   H          LH AF VF+FN + ELLLQ+R+ +K  F  +W+NTCC HP   E         GV  AA+R+L +E G      PV +FT      Y A  D   G  E +Y   ++     +   P+P E+  +++        L  +AD  +  L+ +PWF+ ++       W
Sbjct:    2 EHVVIVDPEGQRVGTEEKIRAHA-----DGGTLHLAFCVFVFNPRGELLLQRRADSKYHFSGLWSNTCCGHPRPGE---------GVTEAAERRLGEEFGFVTRLHPVAQFT------YHA-EDHHTGLAEYEYAHVLIGRAPTDQPAPDPLEIGAWEWA-----APLRIQADTQQYPLRYTPWFRRLIQEQPVADW 172          
The following BLAST results are available for this feature:
BLAST of EY753862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
IDI1_AZOSE2.262e-2035.42Isopentenyl-diphosphate Delta-isomerase 1 OS=Azoar... [more]
IDI_NOCFA3.266e-1936.22Isopentenyl-diphosphate Delta-isomerase OS=Nocardi... [more]
IDI_SERP59.504e-1933.16Isopentenyl-diphosphate Delta-isomerase OS=Serrati... [more]
IDI1_PHOLL6.160e-1833.50Isopentenyl-diphosphate Delta-isomerase 1 OS=Photo... [more]
IDI2_PHOLL5.215e-1733.15Isopentenyl-diphosphate Delta-isomerase 2 OS=Photo... [more]
IDI2_AZOSE1.162e-1634.32Isopentenyl-diphosphate Delta-isomerase 2 OS=Azoar... [more]
IDI_BURM11.982e-1632.45Isopentenyl-diphosphate Delta-isomerase OS=Burkhol... [more]
IDI_PHOPR1.284e-1531.44Isopentenyl-diphosphate Delta-isomerase OS=Photoba... [more]
IDI_STRGG2.191e-1533.15Isopentenyl-diphosphate Delta-isomerase OS=Strepto... [more]
IDI_HALHL4.881e-1530.46Isopentenyl-diphosphate Delta-isomerase OS=Halorho... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-007-G06-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753862 ID=EY753862; Name=EY753862; organism=Citrus sinensis; type=EST; length=887bp
CGTCTATTTTTCTCCTCTTCCCATTTCGCCCCTACGGTTTCTTCGATTCG
CAGGCCTCTGTCCTTGAGAGGTGCCTCTCGTTCTAGCTCTTCTTCTTCTT
CCGCTCGCGCAATCAGCACTATGGGTGACGCTACTACTGATGCCGGCATG
GACGCTGTCCAGCGCCGCCTCATGTTTGAAGACGAATGCATTTTGGTGGA
TGAGAATGATCGCGTTGTTGGTCATGAAAACAAATACAACTGTCACTTGA
TGGAAAAGATTGAGTCTTTGAATTTGCTACACAGAGCCTTCAGCGTATTT
TTGTTTAACTCAAAATATGAGCTACTCCTTCAGCAACGCTCTGGAACCAA
AGTTACCTTCCCTCTTGTGTGGACTAACACCTGCTGCAGCCATCCTCTGT
ACCGTGAATCTGAGCTTATTGAGGAGAACGCTCTTGGGGTGAGGAATGCT
GCACAAAGAAAGCTTTTGGATGAGCTGGGCATTTGTGCTGAAGATGTGCC
AGTTGATGAGTTCACTCCACTGGGTCGCATTCTGTACAAGGCCCCTTCTG
ATGGCAAGTGGGGGGAGCATGAACTTGACTACTTACTTTTCATTGTCCGA
GATGTTAGTGTTAACCCAAATCCTGATGAAGTAGCCGAGTATAAATATGT
CAACCGGGGACAGTTAAAAGAGCTTTTGAGGAAAGCAGATGCTGGAGAAG
AAAGTTTGAAGCTGTCTCCTTGGTTCAAACTGGTTGTGGACAATTTCTTG
NTCAAGGGGTGGGATCACCTCGAAAAAGGTACCCTTAACGAAGTCATTGA
CATTGAGACCTTTCACAGTTGACTTAATAAAGCCGCAGCCCTTGAAACCC
ANTATTTGGGGGCGGAACCTGTATTCCATAAGTTGGG
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