EY753862

Overview
NameEY753862
Unique NameEY753862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753862_ssr88 microsatellite EY753862_ssr88:88..99. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6299 contig Csv1_Contig6299:108..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI_VIBFM (Isopentenyl-diphosphate Delta-isomerase OS=Vibrio fischeri (strain MJ11) GN=idi PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.375e-15
Identity = 66/192 (34.38%), Postives = 90/192 (46.88%), Query Frame = 1
Query:  190 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFI-VRDVSVNPNPDEVAEYKYVNRGQL-KELLRKADAGEESLKLSPWFKLVVDNFL 750
            +LV+E    +G   K   H  EK     LLH AFSV L+       E LLQ+R+  K      W+NTCCSHP   E+         V  A  R+L +E+GI    V  ++F  LG  +Y+A  +    EHE DY+L     DVS   NP+EV++ ++ +   + KEL    D        S WF  V    L
Sbjct:    6 VLVNEQGDAIGTMEKLEAH--EK----GLLHLAFSVLLYRETDLGKEFLLQKRAECKYHSKNKWSNTCCSHPRVNEN---------VEAAGTRRLNEEIGITG--VLPEQFVNLGWFIYQAELENGLSEHEQDYILIANTPDVSFILNPEEVSDIQWWSEADIEKELKANPDT------FSVWFPTVYKKVL 174          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI_STRCO (Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces coelicolor GN=idi PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.087e-14
Identity = 62/184 (33.70%), Postives = 84/184 (45.65%), Query Frame = 1
Query:  193 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGK-WGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPWFKLVVD 741
            LVDEN   +G   K + H     +    LHRAFSVFLF+ +  LL+QQR+  K   P VW+NTCC HP   E+            AA R+  +ELG     V        G + Y  P       E E ++L   +    + P+P+EVA   +V+  +L E  R A         S WF  V+D
Sbjct:   24 LVDENGVTIGTAEKLSAH-----QPPGRLHRAFSVFLFDERGRLLIQQRALGKYHSPGVWSNTCCGHPYPGEAPFA---------AAARRTFEELG-----VSPSLLAEAGTVRYNHPDPASGLVEQEYNHLFVGLVQAELRPDPEEVAGTAFVSPAELTE--RHAQD-----TFSAWFMTVLD 181          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI_VIBF1 (Isopentenyl-diphosphate Delta-isomerase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=idi PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.420e-14
Identity = 65/192 (33.85%), Postives = 90/192 (46.88%), Query Frame = 1
Query:  190 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFI-VRDVSVNPNPDEVAEYKYVNRGQL-KELLRKADAGEESLKLSPWFKLVVDNFL 750
            +LV+E    +G   K   H  EK     LLH AFSV L+       E LLQ+R+  K      W+NTCCSHP   E+         V  A  R+L +E+GI    V  ++F  LG  +Y+A  +    EHE DY+L     DVS   NP+EV++ ++ +   + KE+    D        S WF  V    L
Sbjct:    6 VLVNEQGDAIGTMEKLEAH--EK----GLLHLAFSVLLYRETDLGKEFLLQKRAECKYHSKNKWSNTCCSHPRVNEN---------VEVAGTRRLNEEIGITG--VLPEQFVNLGWFIYQAELENGLSEHEQDYILIANTPDVSFILNPEEVSDIQWWSEADIEKEMKANPDT------FSVWFPTVYKKVL 174          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI_STRAW (Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces avermitilis GN=idi PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.048e-14
Identity = 60/184 (32.61%), Postives = 81/184 (44.02%), Query Frame = 1
Query:  193 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS-DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPWFKLVVD 741
            LVDEN   +G   K   H     +    LHRAFSVFLF+ +  LLLQQR+  K   P VW+NTCC HP   E+            AA R+  +ELG     V        G + Y  P  D    E E ++L   +    + P+ +E+ +  +V   +L E   K          S WF  V+D
Sbjct:   24 LVDENGTTIGTAEKLAAH-----QPPGQLHRAFSVFLFDEQGRLLLQQRALGKYHSPGVWSNTCCGHPYPGEAPFA---------AAARRTHEELG-----VSPSLLAEAGTVRYNHPDPDSGLVEQEFNHLFVGLVQSPLRPDAEEIGDTAFVTAAELAERHAKD-------PFSSWFMTVLD 181          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI_SACEN (Isopentenyl-diphosphate Delta-isomerase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=idi PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.793e-13
Identity = 58/194 (29.90%), Postives = 96/194 (49.48%), Query Frame = 1
Query:  181 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVN-RGQLKELLRKADAGEESLKLSPWFKLVVDNFLXKG 759
            ++ +L++++ + +G  +K   H ++       LH AFS ++FN + +LLL QR+  K T+P VWTNTCC HP  +E+         +  A  R+L +ELG+   D+ +     L R  Y+A       E+E+  +     D    PN +EVA   + +  G   E+L    AG  +  +SPW +  V   +  G
Sbjct:    2 EQVVLLNDSGQAIGVTDKATVHHLD-----TPLHLAFSCYVFNGRGQLLLTQRAHEKRTWPGVWTNTCCGHPAPQEA---------MPEAITRRLGEELGLTVRDLTL----VLPRFRYRAVMGNGVVENEICPVFAAFTDDEPAPNREEVAGTAWADWSGFSAEVL----AG--TTDISPWCRQQVAELVELG 171          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI_KLEP7 (Isopentenyl-diphosphate Delta-isomerase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=idi PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.736e-12
Identity = 64/193 (33.16%), Postives = 93/193 (48.19%), Query Frame = 1
Query:  172 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV-PVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVS-VNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPWFKLVVDN 744
            M  +  IL+DE D+  G   KY  H  +       LH AFS +LFN + +LL+ +RS  K  +P VWTN+ C HP  ++ E  E+       A  R+   ELG+   D+ PV    P  R  Y+A +     E+E+   ++  R VS V PN DEV +Y++V+   +   L            SPW  L  +N
Sbjct:    1 MAGEHVILLDEQDQPAGMLEKYAAHTFD-----TPLHLAFSCWLFNQQGQLLVTRRSLGKKAWPGVWTNSVCGHP--QQGETFEQ-------AVTRRCRFELGVEISDIAPVH---PAFR--YRAVAPNGIVENEV-CPVYAARVVSEVQPNDDEVMDYQWVDLATMLSAL-----AATPWAFSPWMVLEAEN 168          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI_KLEP3 (Isopentenyl-diphosphate Delta-isomerase OS=Klebsiella pneumoniae (strain 342) GN=idi PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.597e-12
Identity = 63/192 (32.81%), Postives = 94/192 (48.96%), Query Frame = 1
Query:  172 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVS-VNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPWFKLVVDN 744
            M  +  IL+DE D+  G   KY  H ++       LH AFS +LFN + + L+ +RS  K  +P VWTN+ C HP  ++ E  E+       A  R+   ELG+  E   +    P  R  Y+A +     E+E+   ++  R VS V PN DEV +Y++V+   L+ +L    A       SPW  L  +N
Sbjct:    1 MAGEHVILLDEQDQPAGMLEKYAAHTLD-----TPLHLAFSCWLFNQQGQFLVTRRSLGKKAWPGVWTNSVCGHP--QQGETFEQ-------AVTRRCRFELGV--EIADIAPIHPAFR--YRAVAPNGIVENEV-CPVYAARVVSQVQPNDDEVMDYQWVD---LETMLSALAA--TPWAFSPWMVLEAEN 168          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI_ENT38 (Isopentenyl-diphosphate Delta-isomerase OS=Enterobacter sp. (strain 638) GN=idi PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.507e-11
Identity = 56/186 (30.11%), Postives = 86/186 (46.24%), Query Frame = 1
Query:  169 LMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVS-VNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPW 723
            +  ++  ILV++   VVG + KY  H      S   LH AFS +LFN + + L+ +R+ +K+ +P VWTN+ C HP   E+            A  R+   E+G     V + + TP+         D           +F  + VS +  NPDEV +Y++V   +L  LLR  +A       SPW
Sbjct:    1 MSIQEHVILVNDQGEVVGTQEKYAAHT-----SHTSLHLAFSSWLFNDRGQCLVTRRALSKIAWPGVWTNSVCGHPQIGET---------TEQAIARRCRFEVG-----VEIAQLTPIAADFRYCEIDPSGIVENEICPVFAAQIVSPLKVNPDEVMDYQWV---ELTSLLRALEA--TPWAFSPW 162          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI_MYCVP (Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=idi PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.274e-11
Identity = 55/179 (30.73%), Postives = 89/179 (49.72%), Query Frame = 1
Query:  190 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDV-SVNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPW 723
            +L+D++ R +G   K   H      +   LH AFS +LF+    +LL +R+  K TFP +WTNTCC HP   E+         +++A  R++ +ELG+   D+       L    Y+A +     E+E+   +F  R V  V+P+ DEVA++ +V    ++       A E    +SPW
Sbjct:   11 VLLDDDGRTIGSAPKAQVH-----HASTPLHLAFSCYLFDDAGRVLLTRRAVHKRTFPGIWTNTCCGHPAPGEA---------LQDAVTRRVREELGVGITDLR----CVLPDFRYRAVAADGVVENEV-CPVFCGRAVGQVHPDRDEVADHVWVPWQHMRA------AAEFGWAISPW 164          
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI_CLAMS (Isopentenyl-diphosphate Delta-isomerase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=idi PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.276e-11
Identity = 48/159 (30.19%), Postives = 77/159 (48.43%), Query Frame = 1
Query:  190 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRGQL 666
            +L+D++   +G   K   H  +       LH AFS  +F+++  +L+ +R+  K+T+P VWTN+ C HP   E  L          A  R+   ELG+  E V +     L    Y+A       E+E+  +   V    V+P P+EV EY++V+  QL
Sbjct:    9 VLLDDDGETIGTAPKATVHTRD-----TALHLAFSCHVFDAEGRILVTRRAIGKLTWPGVWTNSFCGHPAPDEDML---------EAVHRRAEQELGLTLESVEL----VLPDFRYRATDAAGVVENEICPVFRAVAATPVDPRPEEVGEYQWVDPEQL 149          
The following BLAST results are available for this feature:
BLAST of EY753862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
IDI_VIBFM6.375e-1534.38Isopentenyl-diphosphate Delta-isomerase OS=Vibrio ... [more]
IDI_STRCO1.087e-1433.70Isopentenyl-diphosphate Delta-isomerase OS=Strepto... [more]
IDI_VIBF11.420e-1433.85Isopentenyl-diphosphate Delta-isomerase OS=Vibrio ... [more]
IDI_STRAW7.048e-1432.61Isopentenyl-diphosphate Delta-isomerase OS=Strepto... [more]
IDI_SACEN7.793e-1329.90Isopentenyl-diphosphate Delta-isomerase OS=Sacchar... [more]
IDI_KLEP71.736e-1233.16Isopentenyl-diphosphate Delta-isomerase OS=Klebsie... [more]
IDI_KLEP36.597e-1232.81Isopentenyl-diphosphate Delta-isomerase OS=Klebsie... [more]
IDI_ENT382.507e-1130.11Isopentenyl-diphosphate Delta-isomerase OS=Enterob... [more]
IDI_MYCVP3.274e-1130.73Isopentenyl-diphosphate Delta-isomerase OS=Mycobac... [more]
IDI_CLAMS4.276e-1130.19Isopentenyl-diphosphate Delta-isomerase OS=Claviba... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-007-G06-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753862 ID=EY753862; Name=EY753862; organism=Citrus sinensis; type=EST; length=887bp
CGTCTATTTTTCTCCTCTTCCCATTTCGCCCCTACGGTTTCTTCGATTCG
CAGGCCTCTGTCCTTGAGAGGTGCCTCTCGTTCTAGCTCTTCTTCTTCTT
CCGCTCGCGCAATCAGCACTATGGGTGACGCTACTACTGATGCCGGCATG
GACGCTGTCCAGCGCCGCCTCATGTTTGAAGACGAATGCATTTTGGTGGA
TGAGAATGATCGCGTTGTTGGTCATGAAAACAAATACAACTGTCACTTGA
TGGAAAAGATTGAGTCTTTGAATTTGCTACACAGAGCCTTCAGCGTATTT
TTGTTTAACTCAAAATATGAGCTACTCCTTCAGCAACGCTCTGGAACCAA
AGTTACCTTCCCTCTTGTGTGGACTAACACCTGCTGCAGCCATCCTCTGT
ACCGTGAATCTGAGCTTATTGAGGAGAACGCTCTTGGGGTGAGGAATGCT
GCACAAAGAAAGCTTTTGGATGAGCTGGGCATTTGTGCTGAAGATGTGCC
AGTTGATGAGTTCACTCCACTGGGTCGCATTCTGTACAAGGCCCCTTCTG
ATGGCAAGTGGGGGGAGCATGAACTTGACTACTTACTTTTCATTGTCCGA
GATGTTAGTGTTAACCCAAATCCTGATGAAGTAGCCGAGTATAAATATGT
CAACCGGGGACAGTTAAAAGAGCTTTTGAGGAAAGCAGATGCTGGAGAAG
AAAGTTTGAAGCTGTCTCCTTGGTTCAAACTGGTTGTGGACAATTTCTTG
NTCAAGGGGTGGGATCACCTCGAAAAAGGTACCCTTAACGAAGTCATTGA
CATTGAGACCTTTCACAGTTGACTTAATAAAGCCGCAGCCCTTGAAACCC
ANTATTTGGGGGCGGAACCTGTATTCCATAAGTTGGG
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