EY753862

Overview
NameEY753862
Unique NameEY753862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753862_ssr88 microsatellite EY753862_ssr88:88..99. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6299 contig Csv1_Contig6299:108..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI_CLAM3 (Isopentenyl-diphosphate Delta-isomerase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=idi PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.585e-11
Identity = 48/159 (30.19%), Postives = 78/159 (49.06%), Query Frame = 1 
Query:  190 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRGQL 666
            +L+D++   +G   K   H  +       LH AFS  +F+++  +L+ +R+  K+T+P VWTN+ C HP   E          +R A  R+   ELG+  E V +     L    Y+A       E+E+  +   V    V+P P+EV EY++V+  QL
Sbjct:    9 VLLDDDGETIGTAPKATVHTRD-----TALHLAFSCHVFDAQGRILVTRRAIGKLTWPGVWTNSFCGHPAPDED---------MREAVHRRAEQELGLELESVEL----VLPDFRYRATDAAGVVENEICPVFRAVAASPVDPRPEEVGEYQWVDPEQL 149
[Close]
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI_MYCTU (Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium tuberculosis GN=idi PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.294e-11
Identity = 54/181 (29.83%), Postives = 89/181 (49.17%), Query Frame = 1 
Query:  181 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPW 723
            +  +L+++     G  +K   H  +       LH AFS ++F+   +LL+ +R+ TK T+P VWTN+CC HPL  ES         +  A +R+L  ELG+  +   VD   P  R  Y+A       E+E+  +  +  D    PN DEV   ++++    ++ +R   AG  +  +SPW
Sbjct:   12 ERVVLLNDRGDATGVADKATVHTGD-----TPLHLAFSSYVFDLHDQLLITRRAATKRTWPAVWTNSCCGHPLPGES---------LPGAIRRRLAAELGLTPD--RVDLILPGFR--YRAAMADGTVENEICPVYRVQVDQQPRPNSDEVDAIRWLS---WEQFVRDVTAGVIA-PVSPW 170
[Close]
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI_MYCTA (Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=idi PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.294e-11
Identity = 54/181 (29.83%), Postives = 89/181 (49.17%), Query Frame = 1 
Query:  181 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPW 723
            +  +L+++     G  +K   H  +       LH AFS ++F+   +LL+ +R+ TK T+P VWTN+CC HPL  ES         +  A +R+L  ELG+  +   VD   P  R  Y+A       E+E+  +  +  D    PN DEV   ++++    ++ +R   AG  +  +SPW
Sbjct:   12 ERVVLLNDRGDATGVADKATVHTGD-----TPLHLAFSSYVFDLHDQLLITRRAATKRTWPAVWTNSCCGHPLPGES---------LPGAIRRRLAAELGLTPD--RVDLILPGFR--YRAAMADGTVENEICPVYRVQVDQQPRPNSDEVDAIRWLS---WEQFVRDVTAGVIA-PVSPW 170
[Close]
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI_MYCBT (Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=idi PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.294e-11
Identity = 54/181 (29.83%), Postives = 89/181 (49.17%), Query Frame = 1 
Query:  181 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPW 723
            +  +L+++     G  +K   H  +       LH AFS ++F+   +LL+ +R+ TK T+P VWTN+CC HPL  ES         +  A +R+L  ELG+  +   VD   P  R  Y+A       E+E+  +  +  D    PN DEV   ++++    ++ +R   AG  +  +SPW
Sbjct:   12 ERVVLLNDRGDATGVADKATVHTGD-----TPLHLAFSSYVFDLHDQLLITRRAATKRTWPAVWTNSCCGHPLPGES---------LPGAIRRRLAAELGLTPD--RVDLILPGFR--YRAAMADGTVENEICPVYRVQVDQQPRPNSDEVDAIRWLS---WEQFVRDVTAGVIA-PVSPW 170
[Close]
BLAST of EY753862 vs. ExPASy Swiss-Prot
Match: IDI_MYCBP (Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=idi PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.294e-11
Identity = 54/181 (29.83%), Postives = 89/181 (49.17%), Query Frame = 1 
Query:  181 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNRGQLKELLRKADAGEESLKLSPW 723
            +  +L+++     G  +K   H  +       LH AFS ++F+   +LL+ +R+ TK T+P VWTN+CC HPL  ES         +  A +R+L  ELG+  +   VD   P  R  Y+A       E+E+  +  +  D    PN DEV   ++++    ++ +R   AG  +  +SPW
Sbjct:   12 ERVVLLNDRGDATGVADKATVHTGD-----TPLHLAFSSYVFDLHDQLLITRRAATKRTWPAVWTNSCCGHPLPGES---------LPGAIRRRLAAELGLTPD--RVDLILPGFR--YRAAMADGTVENEICPVYRVQVDQQPRPNSDEVDAIRWLS---WEQFVRDVTAGVIA-PVSPW 170
The following BLAST results are available for this feature:
BLAST of EY753862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
IDI_CLAM35.585e-1130.19Isopentenyl-diphosphate Delta-isomerase OS=Claviba... [more]
IDI_MYCTU7.294e-1129.83Isopentenyl-diphosphate Delta-isomerase OS=Mycobac... [more]
IDI_MYCTA7.294e-1129.83Isopentenyl-diphosphate Delta-isomerase OS=Mycobac... [more]
IDI_MYCBT7.294e-1129.83Isopentenyl-diphosphate Delta-isomerase OS=Mycobac... [more]
IDI_MYCBP7.294e-1129.83Isopentenyl-diphosphate Delta-isomerase OS=Mycobac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-007-G06-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753862 ID=EY753862; Name=EY753862; organism=Citrus sinensis; type=EST; length=887bp
CGTCTATTTTTCTCCTCTTCCCATTTCGCCCCTACGGTTTCTTCGATTCG
CAGGCCTCTGTCCTTGAGAGGTGCCTCTCGTTCTAGCTCTTCTTCTTCTT
CCGCTCGCGCAATCAGCACTATGGGTGACGCTACTACTGATGCCGGCATG
GACGCTGTCCAGCGCCGCCTCATGTTTGAAGACGAATGCATTTTGGTGGA
TGAGAATGATCGCGTTGTTGGTCATGAAAACAAATACAACTGTCACTTGA
TGGAAAAGATTGAGTCTTTGAATTTGCTACACAGAGCCTTCAGCGTATTT
TTGTTTAACTCAAAATATGAGCTACTCCTTCAGCAACGCTCTGGAACCAA
AGTTACCTTCCCTCTTGTGTGGACTAACACCTGCTGCAGCCATCCTCTGT
ACCGTGAATCTGAGCTTATTGAGGAGAACGCTCTTGGGGTGAGGAATGCT
GCACAAAGAAAGCTTTTGGATGAGCTGGGCATTTGTGCTGAAGATGTGCC
AGTTGATGAGTTCACTCCACTGGGTCGCATTCTGTACAAGGCCCCTTCTG
ATGGCAAGTGGGGGGAGCATGAACTTGACTACTTACTTTTCATTGTCCGA
GATGTTAGTGTTAACCCAAATCCTGATGAAGTAGCCGAGTATAAATATGT
CAACCGGGGACAGTTAAAAGAGCTTTTGAGGAAAGCAGATGCTGGAGAAG
AAAGTTTGAAGCTGTCTCCTTGGTTCAAACTGGTTGTGGACAATTTCTTG
NTCAAGGGGTGGGATCACCTCGAAAAAGGTACCCTTAACGAAGTCATTGA
CATTGAGACCTTTCACAGTTGACTTAATAAAGCCGCAGCCCTTGAAACCC
ANTATTTGGGGGCGGAACCTGTATTCCATAAGTTGGG
back to top