EY753837

Overview
NameEY753837
Unique NameEY753837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753837 vs. ExPASy Swiss-Prot
Match: 4CL3_DICDI (Probable 4-coumarate--CoA ligase 3 OS=Dictyostelium discoideum GN=4cl3 PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.937e-16
Identity = 70/207 (33.82%), Postives = 99/207 (47.83%), Query Frame = 3
Query:  108 FRSKLPDIYIPKHLPLHSYCFENISKVASRPCLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQ-AKASGAKLIITKASYVDKVKDLEEV-----KIMCID--------------SPPDGCLHFSELTQADEKDLPHVDI-LPDDVVALPYSSGDTGLPKVSC 665
            F SK P+I IP+  P+     ++I     +  L++G T   Y+   V  T  K+A GLNKL I + DV+ ++LPN+PE+V  F G    G I +  NP +T  E     A  S   L +T A Y     DL+ V     K++ +D              S     + F++LT  + KD P V I L  D   +P+SSG TGL K  C
Sbjct:   11 FTSKYPNIIIPEK-PIPHLILKHIRYKPDQVLLVDGLTFKEYSSHFVADTIEKVACGLNKLNIKKGDVLGVILPNLPEYVPIFHGTLLMGGITSLVNPDYTIEELSHTLATVSPRYLAVTLAVYEKIKNDLKRVFPSVEKVILVDIAGQTLKEIDQLTLSSDGIVMSFNQLTNNNGKDYPIVRIDLTKDTAIIPFSSGTTGLFKGVC 216          
BLAST of EY753837 vs. ExPASy Swiss-Prot
Match: 4CL2_DICDI (Probable 4-coumarate--CoA ligase 2 OS=Dictyostelium discoideum GN=4cl2 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.530e-16
Identity = 70/209 (33.49%), Postives = 99/209 (47.37%), Query Frame = 3
Query:  102 IIFRSKLPDIYIPKHLPLHSYCFENISKVASRPCLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQ-AKASGAKLIITKASYVDKVKDLEEV-----KIMCID--------------SPPDGCLHFSELTQADEKDLPHVDI-LPDDVVALPYSSGDTGLPKVSC 665
            I F SK P+I IP+  P+     ++I     +  L++G T   Y+   V  T  K+A GLNKL I + DV+ ++LPN+PE+V  F G    G I +  NP +T  E     A  S   L +T A Y     DL+ V     K++ +D              S     + F++L   + KD P V I L  D   +P+SSG TGL K  C
Sbjct:    9 IYFTSKYPNIIIPEK-PIPHLILKHIRSKPDQVLLVDGLTFKEYSSHFVADTIEKVACGLNKLNIKKGDVLGVILPNLPEYVPIFHGTLLMGGITSLVNPDYTIEELSHTLATVSPRYLAVTLAVYEKIKNDLKRVFPSVEKVILVDIAGQTLKEIGQLTLSSDGIVMSFNQLINNNGKDYPIVRIDLKKDTAIIPFSSGTTGLFKGVC 216          
BLAST of EY753837 vs. ExPASy Swiss-Prot
Match: 4CL1_DICDI (Probable 4-coumarate--CoA ligase 1 OS=Dictyostelium discoideum GN=4cl1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.637e-16
Identity = 69/207 (33.33%), Postives = 98/207 (47.34%), Query Frame = 3
Query:  108 FRSKLPDIYIPKHLPLHSYCFENISKVASRPCLINGSTGDVYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQ-AKASGAKLIITKASYVDKVKDLEEV-----KIMCID--------------SPPDGCLHFSELTQADEKDLPHVDILP-DDVVALPYSSGDTGLPKVSC 665
            F SK P+I IP+  P+     ++I     +  L++G T   Y+   V  T  K+A GLNKL I + DV+ ++LPN+PE+V  F G    G I +  NP +T  E     A  S   L +T A Y     DL+ V     K++ +D              S     + F++L   + KD P V I P  D   +P+SSG TGL K  C
Sbjct:   11 FTSKYPNIIIPEK-PVPQLILKHIRSKPDQVLLVDGLTFKEYSSHFVADTIEKVACGLNKLNIKKGDVLGVILPNLPEYVPIFHGTLLMGGITSLVNPDYTIEELSHTLATVSPRYLAVTLAVYEKIKNDLKRVFPSVEKVILVDIAGQTLKEIDQLTLSSDGIVMSFNQLINNNGKDYPIVRIDPKKDTAIIPFSSGTTGLFKGVC 216          
BLAST of EY753837 vs. ExPASy Swiss-Prot
Match: 4CLL9_ORYSJ (4-coumarate--CoA ligase-like 9 OS=Oryza sativa subsp. japonica GN=4CLL9 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.362e-16
Identity = 60/192 (31.25%), Postives = 89/192 (46.35%), Query Frame = 3
Query:  105 IFRSKLPDIYIPKHLPLHSYCFENISKVASRPCLINGSTGD-VYTYGEVELTARKIASGLNKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDLEEVKIMCIDSPP-------DGCLHFSELTQADEKDLPHVDILPDDVVALPYSSGDTGLPK 656
            +FRS+ P + +P  + +  +  +     A R  L+  + G   YTYGEV     + A  L  +G+ +  V+++ LPN+  +    LG    GA+ +  NP    AE  KQ + S AKL++      DKVKD     I   D          DG L  ++ T A    +P       D+ ALPYSSG TG+ K
Sbjct:   19 VFRSRFPPVAVPDGVTVPEFVLDGAEAYADRVALVEAAAGGRSYTYGEVARDTARFARALRSVGVRKGHVVVVALPNLAVYPVVSLGIMSAGAVFSGVNPRALAAEIKKQVEDSEAKLVVANEVAFDKVKDAGVPVIGVGDRERMPGAISWDGLLAAADRTGAGV--VPVDAAQQSDLCALPYSSGTTGVSK 208          
BLAST of EY753837 vs. ExPASy Swiss-Prot
Match: 4CLL6_ARATH (4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana GN=4CLL6 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.096e-12
Identity = 56/190 (29.47%), Postives = 84/190 (44.21%), Query Frame = 3
Query:  105 IFRSKLPDIYIPKHLPLHSYCFENISKVASRPCLINGSTGDVYTYGEVELTARKIASGL-NKLGIGQRDVIMLLLPNVPEFVFSFLGASYRGAIATAANPFFTPAETCKQAKASGAKLIITKASYVDKVKDLEEVKIMCIDSPPDGCLH-----FSELTQADEKDLPHVDILPDDVVALPYSSGDTGLPK 656
            I+ SK P +++P    L +       K      LI+  TG   ++ E+++  + +A+G+ + LG+ Q DV+ L+LPN   F   FL     GAI T  NP  +  E  KQ       L  T    V+K+  L    I   +S     +      F  + +     +P   I  DDV A+ YSSG TG  K
Sbjct:   31 IYTSKFPSLHLPVDPNLDAVSALFSHKHHGDTALIDSLTGFSISHTELQIMVQSMAAGIYHVLGVRQGDVVSLVLPNSVYFPMIFLSLISLGAIVTTMNPSSSLGEIKKQVSECSVGLAFTSTENVEKLSSLGVSVISVSESYDFDSIRIENPKFYSIMKESFGFVPKPLIKQDDVAAIMYSSGTTGASK 220          

HSP 2 Score: 25.0238 bits (53), Expect = 1.096e-12
Identity = 9/16 (56.25%), Postives = 14/16 (87.50%), Query Frame = 2
Query:  647 ATKGVMLTHKGLVTSV 694
            A+KGV+LTH+ L+ S+
Sbjct:  218 ASKGVLLTHRNLIASM 233          
The following BLAST results are available for this feature:
BLAST of EY753837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
4CL3_DICDI1.937e-1633.82Probable 4-coumarate--CoA ligase 3 OS=Dictyosteliu... [more]
4CL2_DICDI2.530e-1633.49Probable 4-coumarate--CoA ligase 2 OS=Dictyosteliu... [more]
4CL1_DICDI5.637e-1633.33Probable 4-coumarate--CoA ligase 1 OS=Dictyosteliu... [more]
4CLL9_ORYSJ7.362e-1631.254-coumarate--CoA ligase-like 9 OS=Oryza sativa sub... [more]
4CLL6_ARATH1.096e-1229.474-coumarate--CoA ligase-like 6 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-007-E03-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753837 ID=EY753837; Name=EY753837; organism=Citrus sinensis; type=EST; length=877bp
AAAAAGCTTTTGTTCGTAATCATTTTCATCATACCAACTTTTTAGTTTCT
TCAATGGAGACTCAAACTCAAACACAAACACAAACCAAGCAACAAGAAGA
GATCATTTTCCGATCAAAGCTCCCCGATATTTACATCCCTAAACACCTCC
CTTTACACTCTTACTGCTTTGAAAACATCTCAAAGGTAGCTTCACGCCCT
TGTTTGATCAATGGCTCCACCGGCGACGTCTACACTTACGGGGAAGTCGA
GCTGACTGCGCGTAAAATCGCTTCTGGGTTAAACAAGCTGGGCATCGGAC
AACGCGATGTGATCATGCTCTTGCTCCCGAACGTGCCCGAGTTCGTGTTC
TCCTTCCTCGGAGCATCTTACCGCGGCGCCATTGCCACTGCGGCCAATCC
TTTCTTCACGCCGGCAGAGACATGCAAACAGGCCAAGGCCTCAGGCGCCA
AGCTCATAATTACAAAAGCTTCTTACGTTGATAAAGTCAAGGACTTAGAA
GAAGTGAAAATCATGTGCATTGACTCACCCCCGGATGGCTGCTTGCATTT
TTCGGAACTTACACAGGCCGACGAGAAAGATCTGCCCCACGTCGATATCT
TACCCGACGACGTCGTGGCGCTCCCGTACTCGTCGGGGGACACAGGGCTA
CCAAAGGTGTCATGCTAACGCACAAAGGGCTCGTCACAAGCGTGGCACAC
CAAGTCGATGGCGAGATCCAAACTGGACTTAACCAAAGAAGACGCGACCT
ATGTGTGGCGGCTTTGTTTACATATATGCTCTAAATTCATCTGGCTTGGG
GGTAAGAGCTGGGGAGCATCTTGATCATGCAAAATTTGAATCACTTTTTG
TAACACTTATGGGAGGCAAGTTACGGG
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