EY753823

Overview
NameEY753823
Unique NameEY753823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753823 vs. ExPASy Swiss-Prot
Match: GCSP_ROSDO (Glycine dehydrogenase [decarboxylating] OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=gcvP PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.154e-20
Identity = 64/173 (36.99%), Postives = 92/173 (53.18%), Query Frame = 1
Query:    4 IAQRVHGLAGTFALGLKKLG-TVEVQGLPFFDTVKVKCADAHA-IASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATN*MMPVTWPXFA 516
            IAQR+H  A   A GL++ G TV+ Q   FFDT+ V      A +  +A    +NLR V    V  S +E    + ++ ++  F        T A      +   P  + R S YLTHP+F+    E E++RY+  L  ++L+L  +MIPLGSCTMKLN+   MMPV+W  F+
Sbjct:  358 IAQRIHRKAVRLAKGLEEAGFTVDPQA--FFDTITVDVGPLQAAVMKSAVDEGINLRRVGETRVGISLNERCRPDTLEAVWRAFG------ITRADNDFRPDYRFPEEMLRTSDYLTHPIFHMNRAETEMMRYMRRLSDRDLALDRAMIPLGSCTMKLNSAAEMMPVSWRDFS 522          
BLAST of EY753823 vs. ExPASy Swiss-Prot
Match: GCSP_PROAC (Glycine dehydrogenase [decarboxylating] OS=Propionibacterium acnes GN=gcvP PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.500e-19
Identity = 60/172 (34.88%), Postives = 91/172 (52.91%), Query Frame = 1
Query:    4 IAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKC-ADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATN*MMPVTWPXFA 516
            IA++V   A   A  L+  G ++V    FFDT++++    A  + + A +    L +VD + +  S DET T +++ +L  +  G          +    + A P  L R S ++THPVF+ YHTE  ++RY+  L   +  L   MIPLGSCTMKLNA   M  +TWP F+
Sbjct:  375 IARQVTDRAHQLASALRAAG-LDVADQQFFDTIRIRTKGGAKELWNRAREGGYTLDLVDGDILQISVDETVTDDELRELTQLLGGSTD------EIRGPADRAWPEDLRRTSSFMTHPVFSSYHTETTMMRYLKRLADHDYGLDRGMIPLGSCTMKLNAAAEMEAMTWPAFS 539          
BLAST of EY753823 vs. ExPASy Swiss-Prot
Match: GCSP_SYNR3 (Glycine dehydrogenase [decarboxylating] OS=Synechococcus sp. (strain RCC307) GN=gcvP PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.828e-18
Identity = 64/173 (36.99%), Postives = 87/173 (50.29%), Query Frame = 1
Query:    4 IAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGG--KSVPFTAASLAEEVETAIPSGL-TRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATN*MMPVTWPXF 513
            IA+RV  L    A GL++LG ++V   P FDT++++    +           NL  +       S DE +   +V  L   FA G  ++ P  +  LA   +      L  R + +L   VF  Y +E ELLRYI  L SK+ SL H MIPLGSCTMKLNA   + PV+W  F
Sbjct:  354 IARRVQRLTAALAAGLQQLG-LDVAAAPAFDTLRLRLDQPNGWIERLEAAGFNLLPLPDGA-GISLDECSDEAEVQALLECFAAGCGRTAPAISELLAATPQAKSVGELPVRPAGWLPQAVFQLYRSETELLRYIQRLVSKDFSLVHGMIPLGSCTMKLNAAAELQPVSWAAF 524          
BLAST of EY753823 vs. ExPASy Swiss-Prot
Match: GCSP_MYCBT (Glycine dehydrogenase [decarboxylating] OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=gcvP PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.229e-18
Identity = 65/171 (38.01%), Postives = 87/171 (50.88%), Query Frame = 1
Query:    4 IAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATN*MMPVTWPXF 513
            IA+RVH  A   A     LG   V    +FDTV  +    A  + + A    +NL  VD++ V+ + DE TT   V  +   F    + P   A +A           TR S +LTHP F +Y TE  ++RY+  L  K+++L  SMIPLGSCTMKLNA   M  +TWP F
Sbjct:  360 IARRVHAHAEAIA---GALGDALVHD-KYFDTVLARVPGRADEVLARAKANGINLWRVDADHVSVACDEATTDTHVAVVLDAFGVAAAAP-AHADIA-----------TRTSEFLTHPAFTQYRTETSMMRYLRALADKDIALDRSMIPLGSCTMKLNAAAEMESITWPEF 514          
BLAST of EY753823 vs. ExPASy Swiss-Prot
Match: GCSP_MYCBP (Glycine dehydrogenase [decarboxylating] OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=gcvP PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.229e-18
Identity = 65/171 (38.01%), Postives = 87/171 (50.88%), Query Frame = 1
Query:    4 IAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATN*MMPVTWPXF 513
            IA+RVH  A   A     LG   V    +FDTV  +    A  + + A    +NL  VD++ V+ + DE TT   V  +   F    + P   A +A           TR S +LTHP F +Y TE  ++RY+  L  K+++L  SMIPLGSCTMKLNA   M  +TWP F
Sbjct:  360 IARRVHAHAEAIA---GALGDALVHD-KYFDTVLARVPGRADEVLARAKANGINLWRVDADHVSVACDEATTDTHVAVVLDAFGVAAAAP-AHADIA-----------TRTSEFLTHPAFTQYRTETSMMRYLRALADKDIALDRSMIPLGSCTMKLNAAAEMESITWPEF 514          
BLAST of EY753823 vs. ExPASy Swiss-Prot
Match: GCSP_MYCBO (Glycine dehydrogenase [decarboxylating] OS=Mycobacterium bovis GN=gcvP PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.229e-18
Identity = 65/171 (38.01%), Postives = 87/171 (50.88%), Query Frame = 1
Query:    4 IAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATN*MMPVTWPXF 513
            IA+RVH  A   A     LG   V    +FDTV  +    A  + + A    +NL  VD++ V+ + DE TT   V  +   F    + P   A +A           TR S +LTHP F +Y TE  ++RY+  L  K+++L  SMIPLGSCTMKLNA   M  +TWP F
Sbjct:  360 IARRVHAHAEAIA---GALGDALVHD-KYFDTVLARVPGRADEVLARAKANGINLWRVDADHVSVACDEATTDTHVAVVLDAFGVAAAAP-AHADIA-----------TRTSEFLTHPAFTQYRTETSMMRYLRALADKDIALDRSMIPLGSCTMKLNAAAEMESITWPEF 514          
BLAST of EY753823 vs. ExPASy Swiss-Prot
Match: GCSP_MYCTU (Probable glycine dehydrogenase [decarboxylating] OS=Mycobacterium tuberculosis GN=gcvP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.075e-17
Identity = 65/171 (38.01%), Postives = 87/171 (50.88%), Query Frame = 1
Query:    4 IAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATN*MMPVTWPXF 513
            IA+RVH  A   A     LG   V    +FDTV  +    A  + + A    +NL  VD++ V+ + DE TT   V  +   F         AA+     + A     TR S +LTHP F +Y TE  ++RY+  L  K+++L  SMIPLGSCTMKLNA   M  +TWP F
Sbjct:  360 IARRVHAHAEAIA---GALGDALVHD-KYFDTVLARVPGRADEVLARAKANGINLWRVDADHVSVACDEATTDTHVAVVLDAFG-------VAAAAPAHTDIA-----TRTSEFLTHPAFTQYRTETSMMRYLRALADKDIALDRSMIPLGSCTMKLNAAAEMESITWPEF 514          
BLAST of EY753823 vs. ExPASy Swiss-Prot
Match: GCSP_MYCTA (Glycine dehydrogenase [decarboxylating] OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=gcvP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.075e-17
Identity = 65/171 (38.01%), Postives = 87/171 (50.88%), Query Frame = 1
Query:    4 IAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATN*MMPVTWPXF 513
            IA+RVH  A   A     LG   V    +FDTV  +    A  + + A    +NL  VD++ V+ + DE TT   V  +   F         AA+     + A     TR S +LTHP F +Y TE  ++RY+  L  K+++L  SMIPLGSCTMKLNA   M  +TWP F
Sbjct:  360 IARRVHAHAEAIA---GALGDALVHD-KYFDTVLARVPGRADEVLARAKANGINLWRVDADHVSVACDEATTDTHVAVVLDAFG-------VAAAAPAHTDIA-----TRTSEFLTHPAFTQYRTETSMMRYLRALADKDIALDRSMIPLGSCTMKLNAAAEMESITWPEF 514          
BLAST of EY753823 vs. ExPASy Swiss-Prot
Match: GCSP_PROMT (Glycine dehydrogenase [decarboxylating] OS=Prochlorococcus marinus (strain NATL2A) GN=gcvP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.404e-17
Identity = 60/158 (37.97%), Postives = 84/158 (53.16%), Query Frame = 1
Query:   91 FDTVKVKCADAHAIASAAYKIEMNLRVV-------DSNTVTASFDETTTLEDVDKLFIVFAGGKSVP--------FTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATN*MMPVTWPXFAT 519
            FD+V V C++A  +   A +   NLRV+       ++     +FDE T  E++ KL  + A  K           F  ASL +     IP    RE  +L   VFN+Y +E +L+RYIH L SK+ SL   MIPLGSCTMKLNA   ++P+ W  F++
Sbjct:  387 FDSVDVYCSEASEVIQLASEEGYNLRVLPIGSDFENAKGFGVTFDELTCDEEIYKLHQILAQVKGKKTHDLSNFIFENASLID-----IP---LREKSWLEQSVFNQYQSETDLMRYIHCLVSKDFSLVQGMIPLGSCTMKLNAAAELLPIEWREFSS 536          
BLAST of EY753823 vs. ExPASy Swiss-Prot
Match: GCSP_PROM1 (Glycine dehydrogenase [decarboxylating] OS=Prochlorococcus marinus (strain NATL1A) GN=gcvP PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.647e-16
Identity = 52/150 (34.67%), Postives = 78/150 (52.00%), Query Frame = 1
Query:   91 FDTVKVKCADAHAIASAAYKIEMNLRVV-------DSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATN*MMPVTWPXFAT 519
            FD+V V C++A  +   A +   N RV+       ++     +FDE T  E++  L  + A  K       S       ++     RE  +L   VFN+Y +E +L+RYIH L SK+ SL   MIPLGSCTMKLN+   ++P+ W  F++
Sbjct:  387 FDSVDVYCSEASEVIQLASEEGYNFRVLPIGSDFENAKGFGVTFDELTCDEEIYTLHQILAQVKGKKAHDLSNFLNENASLVDIPLREKSWLEQSVFNQYQSETDLMRYIHSLVSKDFSLVQGMIPLGSCTMKLNSAAELLPIEWREFSS 536          
The following BLAST results are available for this feature:
BLAST of EY753823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 252
Match NameE-valueIdentityDescription
GCSP_ROSDO5.154e-2036.99Glycine dehydrogenase [decarboxylating] OS=Roseoba... [more]
GCSP_PROAC1.500e-1934.88Glycine dehydrogenase [decarboxylating] OS=Propion... [more]
GCSP_SYNR32.828e-1836.99Glycine dehydrogenase [decarboxylating] OS=Synecho... [more]
GCSP_MYCBT8.229e-1838.01Glycine dehydrogenase [decarboxylating] OS=Mycobac... [more]
GCSP_MYCBP8.229e-1838.01Glycine dehydrogenase [decarboxylating] OS=Mycobac... [more]
GCSP_MYCBO8.229e-1838.01Glycine dehydrogenase [decarboxylating] OS=Mycobac... [more]
GCSP_MYCTU1.075e-1738.01Probable glycine dehydrogenase [decarboxylating] O... [more]
GCSP_MYCTA1.075e-1738.01Glycine dehydrogenase [decarboxylating] OS=Mycobac... [more]
GCSP_PROMT1.404e-1737.97Glycine dehydrogenase [decarboxylating] OS=Prochlo... [more]
GCSP_PROM12.647e-1634.67Glycine dehydrogenase [decarboxylating] OS=Prochlo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-007-C11-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753823 ID=EY753823; Name=EY753823; organism=Citrus sinensis; type=EST; length=759bp
ACCATTGCTCAAAGAGTCCATGGACTAGCCGGGACTTTCGCCCTTGGGTT
AAAAAAGCTGGGGACAGTGGAAGTCCAGGGGCTTCCCTTCTTTGACACTG
TGAAGGTGAAGTGTGCGGATGCACATGCCATTGCCAGTGCTGCTTACAAG
ATTGAAATGAATCTTCGGGTTGTAGATTCCAACACCGTCACTGCTTCCTT
TGATGAAACAACCACCTTGGAGGATGTTGATAAGCTTTTCATAGTTTTCG
CTGGGGGCAAATCAGTTCCATTCACTGCTGCATCTCTGGCTGAAGAGGTT
GAGACTGCAATTCCGTCTGGATTAACAAGGGAGAGTCCGTATCTGACACA
TCCTGTTTTTAACAAATACCACACAGAGCATGAATTGCTTAGATACATTC
ATCTGTTACAATCAAAGGAGCTCTCACTATGCCATAGTATGATTCCATTG
GGATCTTGTACAATGAAATTGAATGCAACAAACTGAATGATGCCAGTGAC
ATGGCCTANCTTTGCTACATACACCCTTTTGCCCCTGCTGACCAGGCTCA
GGNTTATCANGAAATGTTTACAATCTGGGTGAGTGGCTGTGTACCATTAC
TGGGGCTTGACTCTTCTCTTGCACCAAATGCNTGTGCANCTGGTGAGTAT
GCTGGGCTCATGGNTATCCGCGCTTATCATAAGGCAAGAGAGACATCACG
GNATGTGGCATTATACCGTGTCAGCCATGGAACATNCTGCTCTGCTGCCA
TGTTGGATG
back to top