EY753810

Overview
NameEY753810
Unique NameEY753810
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length471
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10820 contig Csv1_Contig10820:506..976. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY753810 vs. ExPASy Swiss-Prot
Match: RER1_CHICK (Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.892e-13
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 2
Query:    2 AFVLTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 139
            A   TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:  132 AMACTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of EY753810 vs. ExPASy Swiss-Prot
Match: RER1_CAEEL (Protein RER1 homolog OS=Caenorhabditis elegans GN=rer-1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.415e-13
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 2
Query:    2 AFVLTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 145
            A   TFF  FDVPVFWPIL+ Y+ +L  LT++RQI HMIKYRYIPF +
Sbjct:  127 AITCTFFEFFDVPVFWPILVMYFFILTFLTLKRQIMHMIKYRYIPFTV 174          
BLAST of EY753810 vs. ExPASy Swiss-Prot
Match: RER1_SCHPO (Protein rer1 OS=Schizosaccharomyces pombe GN=rer1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.875e-12
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 2
Query:    2 AFVLTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 145
            A V +FF +FDVPVFWPIL+ Y++VL     RRQI HM+KYRY+PF+I
Sbjct:  129 ALVASFFRIFDVPVFWPILVVYYLVLSFFCFRRQIQHMLKYRYVPFDI 176          
BLAST of EY753810 vs. ExPASy Swiss-Prot
Match: RER1_DICDI (Protein RER1 homolog OS=Dictyostelium discoideum GN=rer1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.707e-11
Identity = 27/44 (61.36%), Postives = 36/44 (81.82%), Query Frame = 2
Query:   14 TFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 145
            TF    D+PVFWPILL Y+I++F +TM++QI HMIKY+YIPF +
Sbjct:  135 TFIPFLDLPVFWPILLLYFIIIFSVTMKKQIKHMIKYKYIPFTV 178          
The following BLAST results are available for this feature:
BLAST of EY753810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RER1_CHICK2.892e-1369.57Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1[more]
RER1_CAEEL8.415e-1364.58Protein RER1 homolog OS=Caenorhabditis elegans GN=... [more]
RER1_SCHPO1.875e-1262.50Protein rer1 OS=Schizosaccharomyces pombe GN=rer1 ... [more]
RER1_DICDI2.707e-1161.36Protein RER1 homolog OS=Dictyostelium discoideum G... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-007-B07-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753810 ID=EY753810; Name=EY753810; organism=Citrus sinensis; type=EST; length=471bp
AGCTTTTGTATTGACATTCTTTTCTGTGTTTGATGTTCCTGTGTTTTGGC
CTATATTACTTTGTTACTGGATTGTTCTGTTTGTTCTTACAATGAGACGC
CAAATCGCACACATGATCAAATACAGATATATCCCGTTCAACATTGGAAA
ACAGAAGTATGGTGGTAAGAAACCTTCATCAAGTGGCGGTGGCTCCCGTG
GGGACTGAAGCAGAACTTATTCACAGAGCCAGTAGAAAAAGGACTGGATG
GGGATAAAAAAATAGGTTATGGGAAGATATTATAATTGAATTTTTTCCTT
TCAAGGGACATGCACTTGGTTATTATGAATGAAGCTTATAGTAGACATAA
AGTTCAATAGTGCGGGATTGCTAAAATGTTGCAGAATTGAAACTTTAATG
TTTACGCTCATGTTATGAAGATTCCAAGATTGTTGGCAATGTAAAAAAAA
AAAAAAAAAAAAAAAANNNNG
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