EY753808
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY753808 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2) HSP 1 Score: 127.872 bits (320), Expect = 7.670e-29 Identity = 82/188 (43.62%), Postives = 96/188 (51.06%), Query Frame = 1 Query: 142 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTRXXXXXXXXXXXXXXXXXXXXXXXXXXVPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMXXXXXXXXXXXXALRAAY 705 IFVKTL G++F++EVKP D V DVK IETV+G++ YPAA+QMLI+QGKVLKD+TTLEEN V ENSF+VIML+K K ST VP VYG AASNLVAG LE +QQILDM ALRAA+ Sbjct: 3 IFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTKASPSGASTASAPAPSATQPQTVATPQVSAPTASVPVP-------------TSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAF 176
BLAST of EY753808 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2) HSP 1 Score: 125.176 bits (313), Expect = 4.971e-28 Identity = 60/84 (71.43%), Postives = 74/84 (88.10%), Query Frame = 1 Query: 142 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGST 393 IFVKTLKGT F++EVKPED+V DVK IE+VQG+DVYPAA+QMLI+QGKVLKD+TT+EENKVAENSF+VIM+ K+K + S+ Sbjct: 3 IFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMMNKSKPASAAASS 86
BLAST of EY753808 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 2.642e-21 Identity = 65/186 (34.95%), Postives = 85/186 (45.70%), Query Frame = 1 Query: 148 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTRXXXXXXXXXXXXXXXXXXXXXXXXXXVPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMXXXXXXXXXXXXALRAAY 705 VKTLKG+ F++ V P DT+ VK IE Q D YP QQ+LI+ GKVLKD+TTL ENKV E F+V+ML+K+K + G + VP YG AAS LV+G+++E +QQI++M ALRAAY Sbjct: 5 VKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVMLSKSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSIAVP----------------ASNSTPVQEQPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAY 174
BLAST of EY753808 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 1.311e-20 Identity = 51/76 (67.11%), Postives = 59/76 (77.63%), Query Frame = 1 Query: 142 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 369 I VKTLKG++F +EV V DVK IET QG +YPA QQMLI+QGKVLKDDTTL+ENKV ENSF+VIML + K Sbjct: 3 ISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQGK 78
BLAST of EY753808 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3) HSP 1 Score: 91.2781 bits (225), Expect = 7.955e-18 Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 1 Query: 148 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 369 VKTLKG+ F++ V P DT+ VK IE QG D YP QQ+LI+ GKVLKD+T+L ENKV E F+V+ML+K+K Sbjct: 5 VKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSK 78
BLAST of EY753808 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14 Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 1 Query: 142 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT 378 + +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVT 81
BLAST of EY753808 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14 Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 1 Query: 142 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT 378 + +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVT 81
BLAST of EY753808 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.834e-14 Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 1 Query: 142 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 369 + +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78
BLAST of EY753808 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.395e-14 Identity = 37/79 (46.84%), Postives = 56/79 (70.89%), Query Frame = 1 Query: 142 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT 378 + +KTL+ +F +++ P++TV +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T Sbjct: 3 VTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVT 81
BLAST of EY753808 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.717e-12 Identity = 35/84 (41.67%), Postives = 57/84 (67.86%), Query Frame = 1 Query: 142 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGST 393 I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + + ++ E +FVV+M+TK K G+G++ Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK--AGQGTS 86 The following BLAST results are available for this feature:
BLAST of EY753808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >EY753808 ID=EY753808; Name=EY753808; organism=Citrus sinensis; type=EST; length=881bpback to top |