EY753759

Overview
NameEY753759
Unique NameEY753759
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753759 vs. ExPASy Swiss-Prot
Match: RL16_NEUCR (60S ribosomal protein L16 OS=Neurospora crassa GN=rpl-16 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.859e-23
Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = 2
Query:  311 GPFHFRAPAKIFWRSVRGLFPCTTLRVSASLARLWAFEGVLASYDPVLRLVIPVALVVSRLSPGPSFCLLCRLASVVWW 547
            GPFHFRAP++IF+++VRG+ P  T R +A+L RL  FEGV   YD   ++V+P AL V RL PG  FC + RL+S V W
Sbjct:   71 GPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALRVLRLQPGRKFCTVGRLSSEVGW 149          

HSP 2 Score: 42.743 bits (99), Expect = 5.859e-23
Identity = 23/47 (48.94%), Postives = 29/47 (61.70%), Query Frame = 1
Query:  124 VVVDALLHLLGRLASIAAIELLLFHXVVAVRCEYICLCGGLVRPNVK 264
            VV+D   HLLGRLASI A +LL    +V VRCE + + G   R  +K
Sbjct:    8 VVIDGKGHLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLK 54          
BLAST of EY753759 vs. ExPASy Swiss-Prot
Match: R13A4_ARATH (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.609e-23
Identity = 54/91 (59.34%), Postives = 64/91 (70.33%), Query Frame = 2
Query:  275 FLRMRMTTLPFHGPFHFRAPAKIFWRSVRGLFPCTTLRVSASLARLWAFEGVLASYDPVLRLVIPVALVVSRLSPGPSFCLLCRLASVVWW 547
            FLR RM T P HGP HFRAP+KIFWR+VRG+ P  T R +A+LARL  +EGV   YD + R+VIP AL V RL  G  +CLL RL+S V W
Sbjct:   62 FLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGW 152          

HSP 2 Score: 69.707 bits (169), Expect = 2.619e-11
Identity = 41/73 (56.16%), Postives = 45/73 (61.64%), Query Frame = 1
Query:  103 SGLCANPVVVDALLHLLGRLASIAAIELLLFHXVVAVRCEYICLCGGLVRPNVKCMRV--------PSHAHDH 297
            SG+C+  VVVDA  H+LGRLASI A ELL    VV VRCE ICL GGLVR  +K MR         PSH   H
Sbjct:    5 SGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIH 77          
BLAST of EY753759 vs. ExPASy Swiss-Prot
Match: RL13A_SPOFR (60S ribosomal protein L13a OS=Spodoptera frugiperda GN=RpL13A PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.624e-23
Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = 2
Query:  275 FLRMRMTTLPFHGPFHFRAPAKIFWRSVRGLFPCTTLRVSASLARLWAFEGVLASYDPVLRLVIPVALVVSRLSPGPSFCLLCRLASVVWW 547
            FLR R    P  GPFHFRAP+KI W++VRG+ P  T R  ++L RL A++G    YD   R+V+P AL V  L PG  +C + RL+  V W
Sbjct:   59 FLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKSALRRLRAYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGW 149          

HSP 2 Score: 43.5134 bits (101), Expect = 7.624e-23
Identity = 24/56 (42.86%), Postives = 32/56 (57.14%), Query Frame = 1
Query:  103 SGLCANPVVVDALLHLLGRLASIAAIELLLFHXVVAVRCEYICLCGGLVRPNVKCM 270
            +G     +V+D   HLLGRLA++ A  LL  + VV VRCE I + G   R  +K M
Sbjct:    2 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFM 57          
BLAST of EY753759 vs. ExPASy Swiss-Prot
Match: RL13A_PIG (60S ribosomal protein L13a (Fragment) OS=Sus scrofa GN=RPL13A PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.316e-22
Identity = 44/85 (51.76%), Postives = 54/85 (63.53%), Query Frame = 2
Query:  275 FLRMRMTTLPFHGPFHFRAPAKIFWRSVRGLFPCTTLRVSASLARLWAFEGVLASYDPVLRLVIPVALVVSRLSPGPSFCLLCRL 529
            FLR RM T P  GP+HFRAP++IFWR+VRG+ P  T R  A+L RL  F+G+   YD   R+V+P AL V RL     F  L RL
Sbjct:   53 FLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKLTGKFXYLGRL 137          

HSP 2 Score: 42.3578 bits (98), Expect = 1.316e-22
Identity = 23/47 (48.94%), Postives = 30/47 (63.83%), Query Frame = 1
Query:  124 VVVDALLHLLGRLASIAAIELLLFHXVVAVRCEYICLCGGLVRPNVK 264
            +V+D   HLLGRLA+I A ++LL   VV VRCE I + G   R  +K
Sbjct:    3 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLK 49          
BLAST of EY753759 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.923e-22
Identity = 53/91 (58.24%), Postives = 63/91 (69.23%), Query Frame = 2
Query:  275 FLRMRMTTLPFHGPFHFRAPAKIFWRSVRGLFPCTTLRVSASLARLWAFEGVLASYDPVLRLVIPVALVVSRLSPGPSFCLLCRLASVVWW 547
            FLR RM T P HGP HFRAP+KIFWR+VRG+ P  T R + +LARL  FEGV   YD + R+V+P AL V RL  G  +CLL RL+S V W
Sbjct:   62 FLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGW 152          

HSP 2 Score: 69.3218 bits (168), Expect = 3.420e-11
Identity = 39/73 (53.42%), Postives = 45/73 (61.64%), Query Frame = 1
Query:  103 SGLCANPVVVDALLHLLGRLASIAAIELLLFHXVVAVRCEYICLCGGLVRPNVKCMRV--------PSHAHDH 297
            SG+CA  VVVDA  H+LGRLAS+ A +LL    +V VRCE ICL GGLVR  +K MR         PSH   H
Sbjct:    5 SGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIH 77          
BLAST of EY753759 vs. ExPASy Swiss-Prot
Match: RL13A_DROME (60S ribosomal protein L13a OS=Drosophila melanogaster GN=RpL13A PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.842e-22
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 2
Query:  275 FLRMRMTTLPFHGPFHFRAPAKIFWRSVRGLFPCTTLRVSASLARLWAFEGVLASYDPVLRLVIPVALVVSRLSPGPSFCLLCRLASVVWWY 550
            +LR R    P  GPFHFRAP++IF+++VRG+ P  T R  A+LARL  F+G+ + YD   R+V+P+A+ V  L     +C + RL+  V W+
Sbjct:   59 YLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGWH 150          

HSP 2 Score: 43.1282 bits (100), Expect = 2.842e-22
Identity = 25/54 (46.30%), Postives = 30/54 (55.56%), Query Frame = 1
Query:  103 SGLCANPVVVDALLHLLGRLASIAAIELLLFHXVVAVRCEYICLCGGLVRPNVK 264
            +GL    VV+D   HLLGRLAS+ A  LL    V  VRCE + L G   R  +K
Sbjct:    2 TGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIK 55          
BLAST of EY753759 vs. ExPASy Swiss-Prot
Match: RL13A_PICMA (60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.595e-22
Identity = 54/100 (54.00%), Postives = 67/100 (67.00%), Query Frame = 2
Query:  275 FLRMRMTTLPFHGPFHFRAPAKIFWRSVRGLFPCTTLRVSASLARLWAFEGVLASYDPVLRLVIPVALVVSRLSPGPSFCLLCRLASVVWWYCSVSLWEL 574
            FLR RM T P HGP HFRAP++I WR++RG+ P  T R +A+LA L AFEGV   YD   R+VIP AL V RL PG  +CLL RL+  V W+   ++ EL
Sbjct:   62 FLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALATLRAFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHFDTITEL 161          

HSP 2 Score: 69.3218 bits (168), Expect = 3.420e-11
Identity = 40/73 (54.79%), Postives = 45/73 (61.64%), Query Frame = 1
Query:  103 SGLCANPVVVDALLHLLGRLASIAAIELLLFHXVVAVRCEYICLCGGLVRPNVKCMRV--------PSHAHDH 297
            SG+CA  VVVDA  H+LGRLASI A ELL    VV VRCE IC+ GGLVR  +K +R         PSH   H
Sbjct:    5 SGICAKEVVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIH 77          
BLAST of EY753759 vs. ExPASy Swiss-Prot
Match: RL13A_CHOPR (60S ribosomal protein L13a OS=Choristoneura parallela GN=RpL13A PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.263e-22
Identity = 42/91 (46.15%), Postives = 55/91 (60.44%), Query Frame = 2
Query:  275 FLRMRMTTLPFHGPFHFRAPAKIFWRSVRGLFPCTTLRVSASLARLWAFEGVLASYDPVLRLVIPVALVVSRLSPGPSFCLLCRLASVVWW 547
            FLR R    P  GPFHFRAP+KI W++VRG+ P  T R   +L RL +++G    YD   R+V+P AL V  L PG  +C + RL+  V W
Sbjct:   59 FLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKDALRRLRSYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGW 149          

HSP 2 Score: 42.743 bits (99), Expect = 6.263e-22
Identity = 23/56 (41.07%), Postives = 32/56 (57.14%), Query Frame = 1
Query:  103 SGLCANPVVVDALLHLLGRLASIAAIELLLFHXVVAVRCEYICLCGGLVRPNVKCM 270
            +G     +V+D   HLLGRLA++ A  LL  + VV VRCE + + G   R  +K M
Sbjct:    2 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQLNISGNFFRNKLKFM 57          
BLAST of EY753759 vs. ExPASy Swiss-Prot
Match: RL16B_SCHPO (60S ribosomal protein L16-B OS=Schizosaccharomyces pombe GN=rpl16b PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.337e-21
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 2
Query:  275 FLRMRMTTLPFHGPFHFRAPAKIFWRSVRGLFPCTTLRVSASLARLWAFEGVLASYDPVLRLVIPVALVVSRLSPGPSFCLLCRLASVVWW 547
            +LR      P  G FHFRAP++IF ++VRG+ P  T R  A+L  L A EG+   +D   R+V+P AL V RL PG  +C + RL+S V W
Sbjct:   58 YLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGW 148          

HSP 2 Score: 43.5134 bits (101), Expect = 2.337e-21
Identity = 24/47 (51.06%), Postives = 30/47 (63.83%), Query Frame = 1
Query:  124 VVVDALLHLLGRLASIAAIELLLFHXVVAVRCEYICLCGGLVRPNVK 264
            VV+DA  HLLGRLAS+ A +LL    VV VRCE + + G   R  +K
Sbjct:    8 VVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLK 54          
BLAST of EY753759 vs. ExPASy Swiss-Prot
Match: RL16A_SCHPO (60S ribosomal protein L16-A OS=Schizosaccharomyces pombe GN=rpl16a PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.337e-21
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 2
Query:  275 FLRMRMTTLPFHGPFHFRAPAKIFWRSVRGLFPCTTLRVSASLARLWAFEGVLASYDPVLRLVIPVALVVSRLSPGPSFCLLCRLASVVWW 547
            +LR      P  G FHFRAP++IF ++VRG+ P  T R  A+L  L A EG+   +D   R+V+P AL V RL PG  +C + RL+S V W
Sbjct:   58 YLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGW 148          

HSP 2 Score: 43.5134 bits (101), Expect = 2.337e-21
Identity = 24/47 (51.06%), Postives = 30/47 (63.83%), Query Frame = 1
Query:  124 VVVDALLHLLGRLASIAAIELLLFHXVVAVRCEYICLCGGLVRPNVK 264
            VV+DA  HLLGRLAS+ A +LL    VV VRCE + + G   R  +K
Sbjct:    8 VVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLK 54          
The following BLAST results are available for this feature:
BLAST of EY753759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL16_NEUCR5.859e-2353.1660S ribosomal protein L16 OS=Neurospora crassa GN=... [more]
R13A4_ARATH6.609e-2359.3460S ribosomal protein L13a-4 OS=Arabidopsis thalia... [more]
RL13A_SPOFR7.624e-2347.2560S ribosomal protein L13a OS=Spodoptera frugiperd... [more]
RL13A_PIG1.316e-2251.7660S ribosomal protein L13a (Fragment) OS=Sus scrof... [more]
R13A1_ARATH1.923e-2258.2460S ribosomal protein L13a-1 OS=Arabidopsis thalia... [more]
RL13A_DROME2.842e-2243.4860S ribosomal protein L13a OS=Drosophila melanogas... [more]
RL13A_PICMA5.595e-2254.0060S ribosomal protein L13a OS=Picea mariana GN=RPL... [more]
RL13A_CHOPR6.263e-2246.1560S ribosomal protein L13a OS=Choristoneura parall... [more]
RL16B_SCHPO2.337e-2145.0560S ribosomal protein L16-B OS=Schizosaccharomyces... [more]
RL16A_SCHPO2.337e-2145.0560S ribosomal protein L16-A OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-006-E12-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753759 ID=EY753759; Name=EY753759; organism=Citrus sinensis; type=EST; length=909bp
GGNATTAAAAAACTCGACCCACGCGTCCGGGNGCATCTCGTTCCTGTNAG
TTGTGAAAAATCCTCCNATTTNTNTAGAGGGCTCTCCTGGTGGGGTCCGG
CATCGGGGCTCTGCGCGAATCCAGTGGTGGTGGACGCACTCCTTCACCTG
CTGGGGCGGCTGGCTTCCATCGCGGCCATCGAGCTTCTCTTGTTTCATNN
AGTCGTCGCGGTCCGCTGCGAATACATTTGCTTGTGCGGCGGCCTCGTCC
GCCCGAATGTGAAGTGCATGCGTGTTCCTTCGCATGCGCATGACCACGCT
GCCTTTTCACGGTCCCTTTCACTTCCGCGCCCCTGCCAAGATCTTCTGGC
GCTCCGTGCGTGGGCTGTTTCCGTGTACGACCCTGCGGGTATCTGCTTCT
CTTGCTCGCTTGTGGGCATTTGAGGGGGTCCTTGCATCTTATGACCCCGT
GTTGAGACTGGTTATCCCCGTCGCTCTCGTGGTTTCGCGGCTTTCCCCCG
GTCCCTCGTTCTGCCTGTTGTGCCGCCTGGCCTCCGTGGTGTGGTGGTAC
TGTTCTGTCTCCCTCTGGGAGCTCGGGTTGACATTTGGGACCTGTTTCAT
GTGGCCTCTGTGGCGAAGACTCCGCTCTTCTTTCTTAGGGCCTAAGCTGC
GAAGGTTGTCCTTTAGATTCTTGTCTCGCTNTTGGGCCTCCTTGCCCCTG
CCTTTTTTGACCCGTCCTCTCGTTGGCTACCCTTCTGGTGGGCCTGGTCT
TGGCTTCCCTTGGGCTTTCGCTTTGTTCCNGCTTTTTCTTGCTCGGATTT
GTTCCGCTGGGTGATTTTCCTTCTTCCTCCCCCCTCTACTGTGGTTGTCA
AATGTTGCGTTTCTCTCTTAATTTCCGCGGGTTAAACCTTACCTGAAAAA
GGGCGCCTT
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