EY753759

Overview
NameEY753759
Unique NameEY753759
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753759 vs. ExPASy Swiss-Prot
Match: RL16C_SCHPO (60S ribosomal protein L16-C OS=Schizosaccharomyces pombe GN=rpl16c PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.493e-20
Identity = 40/91 (43.96%), Postives = 54/91 (59.34%), Query Frame = 2
Query:  275 FLRMRMTTLPFHGPFHFRAPAKIFWRSVRGLFPCTTLRVSASLARLWAFEGVLASYDPVLRLVIPVALVVSRLSPGPSFCLLCRLASVVWW 547
            +LR      P  G FHFRAP++IF ++VRG+ P  T R + +L  L A EG+   +D   RLV+P AL V RL P   +C + RL+S V W
Sbjct:   58 YLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVGW 148          

HSP 2 Score: 41.9726 bits (97), Expect = 2.493e-20
Identity = 22/47 (46.81%), Postives = 29/47 (61.70%), Query Frame = 1
Query:  124 VVVDALLHLLGRLASIAAIELLLFHXVVAVRCEYICLCGGLVRPNVK 264
            V++DA  HL+GRLAS  A +LL    VV VRCE + + G   R  +K
Sbjct:    8 VIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLK 54          
BLAST of EY753759 vs. ExPASy Swiss-Prot
Match: RL13A_DICDI (60S ribosomal protein L13a OS=Dictyostelium discoideum GN=rpl13a PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.302e-20
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 2
Query:  275 FLRMRMTTLPFHGPFHFRAPAKIFWRSVRGLFPCTTLRVSASLARLWAFEGVLASYDPVLRLVIPVALVVSRLSPGPSFCLLCRLASVVWW 547
            FL + M T    G  H R+P+KIFWR+VRG+ P  T R  A+L  +  FEGV A YD V R+V+P AL V +L+    + +L RL+  V W
Sbjct:   57 FLNLTMNTNHARGHRHGRSPSKIFWRAVRGMLPHKTPRGQAALDNMKVFEGVPAPYDKVKRVVVPSALRVVKLNTTRKYTVLSRLSQEVGW 147          

HSP 2 Score: 42.3578 bits (98), Expect = 9.302e-20
Identity = 22/47 (46.81%), Postives = 29/47 (61.70%), Query Frame = 1
Query:  124 VVVDALLHLLGRLASIAAIELLLFHXVVAVRCEYICLCGGLVRPNVK 264
            +V+D   HLLGRLAS+ A  LL    +V VRCE + + G L R  +K
Sbjct:    7 IVIDGKGHLLGRLASVVAKSLLSGQKIVVVRCEELNISGPLSRNKLK 53          
BLAST of EY753759 vs. ExPASy Swiss-Prot
Match: RL13A_CAEEL (60S ribosomal protein L13a OS=Caenorhabditis elegans GN=rpl-16 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.041e-19
Identity = 42/91 (46.15%), Postives = 51/91 (56.04%), Query Frame = 2
Query:  275 FLRMRMTTLPFHGPFHFRAPAKIFWRSVRGLFPCTTLRVSASLARLWAFEGVLASYDPVLRLVIPVALVVSRLSPGPSFCLLCRLASVVWW 547
            FLR R    P  G FH+RAP KIFWR+VRG+ P  T R + +L  L A+EGV A Y     L  P A    RL P   FC++ RL+  V W
Sbjct:   58 FLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASRF-RLQPRRKFCVVGRLSHEVGW 147          

HSP 2 Score: 42.743 bits (99), Expect = 2.041e-19
Identity = 24/55 (43.64%), Postives = 31/55 (56.36%), Query Frame = 1
Query:  106 GLCANPVVVDALLHLLGRLASIAAIELLLFHXVVAVRCEYICLCGGLVRPNVKCM 270
            GL    +++D   HLLGRLASI A +LL    VV +R E I + G   R  +K M
Sbjct:    2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYM 56          
BLAST of EY753759 vs. ExPASy Swiss-Prot
Match: RL16A_YEAST (60S ribosomal protein L16-A OS=Saccharomyces cerevisiae GN=RPL16A PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.285e-18
Identity = 40/91 (43.96%), Postives = 55/91 (60.44%), Query Frame = 2
Query:  275 FLRMRMTTLPFHGPFHFRAPAKIFWRSVRGLFPCTTLRVSASLARLWAFEGVLASYDPVLRLVIPVALVVSRLSPGPSFCLLCRLASVVWW 547
            FLR         GPFHFRAP++IF++++RG+    T R  A+L RL  FEG+   YD   R+V+P AL V RL PG  +  L +L++ V W
Sbjct:   57 FLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGW 147          

HSP 2 Score: 37.3502 bits (85), Expect = 1.285e-18
Identity = 20/47 (42.55%), Postives = 28/47 (59.57%), Query Frame = 1
Query:  124 VVVDALLHLLGRLASIAAIELLLFHXVVAVRCEYICLCGGLVRPNVK 264
            VV+D   HL+GRLAS+ A +LL    +V VR E + + G   R  +K
Sbjct:    7 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLK 53          
BLAST of EY753759 vs. ExPASy Swiss-Prot
Match: RL16B_YEAST (60S ribosomal protein L16-B OS=Saccharomyces cerevisiae GN=RPL16B PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 6.217e-18
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 2
Query:  275 FLRMRMTTLPFHGPFHFRAPAKIFWRSVRGLFPCTTLRVSASLARLWAFEGVLASYDPVLRLVIPVALVVSRLSPGPSFCLLCRLASVVWW 547
            FLR         GPFHFRAP++I ++++RG+    T R  A+L RL  FEG+   YD   R+V+P AL V RL PG  +  L +L++ V W
Sbjct:   56 FLRKATAFNKTRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGW 146          

HSP 2 Score: 36.965 bits (84), Expect = 6.217e-18
Identity = 21/47 (44.68%), Postives = 28/47 (59.57%), Query Frame = 1
Query:  124 VVVDALLHLLGRLASIAAIELLLFHXVVAVRCEYICLCGGLVRPNVK 264
            VV+DA  HLLGRLAS  A ++L    +V VR E + + G   R  +K
Sbjct:    6 VVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLK 52          
BLAST of EY753759 vs. ExPASy Swiss-Prot
Match: RL13A_LUPLU (60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.426e-17
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 2
Query:  275 FLRMRMTTLPFHGPFHFRAPAKIFWRSVRGLFPCTTLRVSASLARLWAFEGVLASYDPVLRLVIPVALVVSRLSPGPSFCLLCRLASVVWW 547
            FLR RM T P HGP H  AP+KIFWR+VRG+ P  T R   +LARL  +EG+   +D   RLV+P AL V RL  G  +CLL +L+S V W
Sbjct:   62 FLRKRMNTKPSHGPIHC-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQKRLVVPDALKVLRLQKGHKYCLLGQLSSEVGW 151          
The following BLAST results are available for this feature:
BLAST of EY753759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL16C_SCHPO2.493e-2043.9660S ribosomal protein L16-C OS=Schizosaccharomyces... [more]
RL13A_DICDI9.302e-2045.0560S ribosomal protein L13a OS=Dictyostelium discoi... [more]
RL13A_CAEEL2.041e-1946.1560S ribosomal protein L13a OS=Caenorhabditis elega... [more]
RL16A_YEAST1.285e-1843.9660S ribosomal protein L16-A OS=Saccharomyces cerev... [more]
RL16B_YEAST6.217e-1842.8660S ribosomal protein L16-B OS=Saccharomyces cerev... [more]
RL13A_LUPLU1.426e-1752.7560S ribosomal protein L13a OS=Lupinus luteus GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-006-E12-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753759 ID=EY753759; Name=EY753759; organism=Citrus sinensis; type=EST; length=909bp
GGNATTAAAAAACTCGACCCACGCGTCCGGGNGCATCTCGTTCCTGTNAG
TTGTGAAAAATCCTCCNATTTNTNTAGAGGGCTCTCCTGGTGGGGTCCGG
CATCGGGGCTCTGCGCGAATCCAGTGGTGGTGGACGCACTCCTTCACCTG
CTGGGGCGGCTGGCTTCCATCGCGGCCATCGAGCTTCTCTTGTTTCATNN
AGTCGTCGCGGTCCGCTGCGAATACATTTGCTTGTGCGGCGGCCTCGTCC
GCCCGAATGTGAAGTGCATGCGTGTTCCTTCGCATGCGCATGACCACGCT
GCCTTTTCACGGTCCCTTTCACTTCCGCGCCCCTGCCAAGATCTTCTGGC
GCTCCGTGCGTGGGCTGTTTCCGTGTACGACCCTGCGGGTATCTGCTTCT
CTTGCTCGCTTGTGGGCATTTGAGGGGGTCCTTGCATCTTATGACCCCGT
GTTGAGACTGGTTATCCCCGTCGCTCTCGTGGTTTCGCGGCTTTCCCCCG
GTCCCTCGTTCTGCCTGTTGTGCCGCCTGGCCTCCGTGGTGTGGTGGTAC
TGTTCTGTCTCCCTCTGGGAGCTCGGGTTGACATTTGGGACCTGTTTCAT
GTGGCCTCTGTGGCGAAGACTCCGCTCTTCTTTCTTAGGGCCTAAGCTGC
GAAGGTTGTCCTTTAGATTCTTGTCTCGCTNTTGGGCCTCCTTGCCCCTG
CCTTTTTTGACCCGTCCTCTCGTTGGCTACCCTTCTGGTGGGCCTGGTCT
TGGCTTCCCTTGGGCTTTCGCTTTGTTCCNGCTTTTTCTTGCTCGGATTT
GTTCCGCTGGGTGATTTTCCTTCTTCCTCCCCCCTCTACTGTGGTTGTCA
AATGTTGCGTTTCTCTCTTAATTTCCGCGGGTTAAACCTTACCTGAAAAA
GGGCGCCTT
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