EY753758

Overview
NameEY753758
Unique NameEY753758
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753758 vs. ExPASy Swiss-Prot
Match: RL13_METBF (50S ribosomal protein L13P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl13p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.346e-11
Identity = 49/140 (35.00%), Postives = 74/140 (52.86%), Query Frame = 1
Query:  100 VVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 516
            V+DA   +LGRLAS VAK+LL+G +++  V  E+  +SG       +Y R  R+R +T+   GP   + P +I  RT+RGM+P+K             Y GVP      + + I DA   +RL    KY  LG ++ ++G
Sbjct:    3 VIDANGLILGRLASTVAKQLLSGDEEIYIVNAEKAVISGSRATTLKEY-RETRERGSTE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPTELKDTETITIADA--DMRLLSSSKYIELGEVSQKMG 137          
BLAST of EY753758 vs. ExPASy Swiss-Prot
Match: RL13_METKA (50S ribosomal protein L13P OS=Methanopyrus kandleri GN=rpl13p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.759e-11
Identity = 45/142 (31.69%), Postives = 73/142 (51.41%), Query Frame = 1
Query:  100 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQK-GHK-YCLLGRLASEVGW 519
            V+DA + +LGRLAS+VAK +L G+++  +  E+  ++G   ++      +L+K     P  GP + R P  IF R VRGM+P KT            Y G P   ++    + P+ +    + + GH  Y  LG L+ E+G+
Sbjct:   17 VIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITG---KKNTIKEEWLQKIQRGDPKKGPFYPRRPDLIFRRVVRGMLPWKTKRGREAFKRLRAYIGTPRWVEEAN--IEPERVAEADMSRLGHLWYVTLGELSEELGY 153          
BLAST of EY753758 vs. ExPASy Swiss-Prot
Match: RL13_METMA (50S ribosomal protein L13P OS=Methanosarcina mazei GN=rpl13p PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.000e-11
Identity = 50/140 (35.71%), Postives = 73/140 (52.14%), Query Frame = 1
Query:  100 VVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 516
            V+DA+  +LGRLAS VAK+LL+G +KV  +  E+  +SG       +Y R  R R  T+   GP   + P +I  RT+RGM+P+K             Y GVP      +   I DA   +RL   +KY  LG ++ ++G
Sbjct:    3 VIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGSRAATLREY-RETRDRGATE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETTTIADA--DMRLLSSNKYVELGEVSQKMG 137          
BLAST of EY753758 vs. ExPASy Swiss-Prot
Match: RL13_PYRKO (50S ribosomal protein L13P OS=Pyrococcus kodakaraensis GN=rpl13p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.918e-11
Identity = 48/142 (33.80%), Postives = 71/142 (50.00%), Query Frame = 1
Query:  100 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNY 525
            +++A   +LGRLAS VAK LL G++VV V  E+  ++G       KY +    R  T P  GP + +   +I  RTVRGM+P KT            Y GVP  ++  +   I +A  + RL    KY  +G +A  +G  +
Sbjct:    3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAIITGNREDIFAKYKQRTELRTRTNPRRGPFYPKRSDEIVRRTVRGMLPWKTDRGRKAFKRLKVYVGVPKEFEGKEFETISEA-HMSRLAT-PKYVTVGEVAKFLGGKF 142          
BLAST of EY753758 vs. ExPASy Swiss-Prot
Match: RL13_PYRFU (50S ribosomal protein L13P OS=Pyrococcus furiosus GN=rpl13p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.728e-11
Identity = 47/142 (33.10%), Postives = 71/142 (50.00%), Query Frame = 1
Query:  100 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNY 525
            +++A   +LGRLAS VAK LL G++VV V  E+  ++G       KY +    R  T P  GP + +   +I  RT+RGM+P KT            Y G+P  +   +   I +A  V RL +  KY  +G +A  +G  +
Sbjct:    3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAVITGNRDVIFKKYKQRTELRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFQGKELETIIEA-HVSRLSR-PKYVTVGEVAKFLGGKF 142          
BLAST of EY753758 vs. ExPASy Swiss-Prot
Match: RL13_PYRAB (50S ribosomal protein L13P OS=Pyrococcus abyssi GN=rpl13p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.728e-11
Identity = 47/142 (33.10%), Postives = 71/142 (50.00%), Query Frame = 1
Query:  100 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNY 525
            +++A   +LGRLAS VAK LL G++VV V  E+  ++G       KY +    R  T P  GP + +   +I  RT+RGM+P KT            Y G+P  +   +   I +A  V RL +  KY  +G +A  +G  +
Sbjct:    3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA-HVSRLSR-PKYVTVGEVAKFLGGKF 142          
The following BLAST results are available for this feature:
BLAST of EY753758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL13_METBF1.346e-1135.0050S ribosomal protein L13P OS=Methanosarcina barke... [more]
RL13_METKA1.759e-1131.6950S ribosomal protein L13P OS=Methanopyrus kandler... [more]
RL13_METMA3.000e-1135.7150S ribosomal protein L13P OS=Methanosarcina mazei... [more]
RL13_PYRKO3.918e-1133.8050S ribosomal protein L13P OS=Pyrococcus kodakarae... [more]
RL13_PYRFU8.728e-1133.1050S ribosomal protein L13P OS=Pyrococcus furiosus ... [more]
RL13_PYRAB8.728e-1133.1050S ribosomal protein L13P OS=Pyrococcus abyssi GN... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-006-E11-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753758 ID=EY753758; Name=EY753758; organism=Citrus sinensis; type=EST; length=840bp
GAGAGAGTTAGAGCAGAAGAGGGAGAGAAAAAGCCACAAAATAGAGAGAG
AGGAACCCTAATAATGGTGTCGGGATCGGGAATCTGCGCGAAGCGAGTGG
TGGTGGACGCACGCCACCACATGCTGGGGCGGCTGGCGTCGATCGTGGCC
AAGGAGCTCCTCAACGGACAGAAAGTCGTCGCGGTCCGCTGCGAAGAGAT
TTGCATGTCCGGCGGCCTCGTCCGCCAGAAAATGAAGTACATGCGGTTCC
TTCGCAAGCGCATGAACACCAAGCCTTCTCACGGTCCCATCCACTTCCGC
GCCCCTGCCAAGATCTTCTGGCGCACCGTCCGCGGGATGATACCGCATAA
GACCAAGCGTGGAGCTGCAGCACTTGCTCGATTGAAGGCATATGAAGGGG
TCCCTGCACCTTATGACAAGGTGAAGAGAATGGTTATCCCCGACGCTCTC
AAGGTTTTGAGGCTTCAGAAGGGTCACAAGTACTGCTTGTTAGGTCGCCT
GGCATCTGAGGTTGGATGGAATTATTATGACACCATCAGGGAGCTTGAGA
AGAAGAGAAAGGAGAGGTCACAGGTGGCTTATGAGAGGAAGAAGCAGCTC
AACAAACTTAGGGCTAAGGCTGAGAAAGTTGCAAAAGAGAAACTTGGCTC
GCAATTGGACATCCTTGCTCCTGTCAATATTGATCAGNTAGCTTGGTGAG
AACATTTTGTTGGGCATTGGCTTGAATTNCCTTTGTGTTTCGACTTTGNT
CAGACTTTTANAACTAAGATTTGTACAACTTGATGATATCTTTTTTTTTC
CCACTAAACTGATGGGTGAGATGATTCGTATATTCTAATT
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