EY753755

Overview
NameEY753755
Unique NameEY753755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753755_ssr851 microsatellite EY753755_ssr851:851..862. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: DHX16_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 OS=Caenorhabditis elegans GN=mog-4 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 8.642e-34
Identity = 81/199 (40.70%), Postives = 116/199 (58.29%), Query Frame = 2
Query:   65 KPRVNGSMANLPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVTRSGS-IGXXXXXXXXXXXXXXXXXXELGVRLGEEVGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLLFHRPTLNAPGKLDPVEILHSTA 658
            K  +  +  +LP+    +  +E  +++ V ++ GETGSGK +   Q L+  G    G  IG                  E+G +LG +VGY+IRFED TSE+T++K++TDG LLRE L+ P+L+  SV++ DEAHER+L+TDIL GLVK  A  R  + K L +SATLD EK S      P    PG+  PV+I ++ A
Sbjct:  354 KMSIEETRKSLPVYAFRDAFIEAVKEHQVLIIEGETGSGKTTQLPQYLYEAGFCEGGKRIGCTQPRRVAAMSVAARVADEVGCKLGTQVGYSIRFEDCTSEKTVLKYMTDGMLLREFLNEPDLASYSVMMIDEAHERTLHTDILFGLVKDIARFR-KDLKLLISSATLDAEKFSSFFDDAPIFRIPGRRFPVDIYYTQA 551          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: CDC28_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 OS=Schizosaccharomyces pombe GN=cdc28 PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 9.632e-34
Identity = 81/194 (41.75%), Postives = 115/194 (59.28%), Query Frame = 2
Query:   74 VNGSMANLPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVTRSGS-IGXXXXXXXXXXXXXXXXXXELGVRLGEEVGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLLFHRPTLNAPGKLDPVEILHS 652
            +  S  +LP+   ++ +++   +  V +++ ETGSGK +   Q LH  G T+    I                   E+ VRLG+EVGY+IRFE+ TSE+T+IK+LTDG LLRE L+ P+L+  SV+I DEAHER+L+TDIL GLVK  A  R  + K L +SAT+D EK S      P    PG+  PV+I ++
Sbjct:  411 LESSRKSLPVYQYKDDLLKAINEYQVLLIVAETGSGKTTQLPQFLHEAGYTKGNKKICCTQPRRVAAMSVAARVAKEMDVRLGQEVGYSIRFENATSEKTVIKYLTDGMLLREFLTEPDLASYSVIIIDEAHERTLHTDILFGLVKDIARFR-PDLKVLISSATIDAEKFSAYFDEAPVFYVPGRRYPVDIYYT 603          

HSP 2 Score: 21.557 bits (44), Expect = 9.632e-34
Identity = 8/19 (42.11%), Postives = 12/19 (63.16%), Query Frame = 3
Query:  675 LASALQPALDIHAPRPAGD 731
            + +A+   L IH  +PAGD
Sbjct:  611 IQAAITTILQIHTTQPAGD 629          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: PRP22_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 OS=Saccharomyces cerevisiae GN=PRP22 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.925e-33
Identity = 77/200 (38.50%), Postives = 116/200 (58.00%), Query Frame = 2
Query:   53 QKTSKPRVNGSMANLPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVTRSGSIGXXXXXXXXXXXXXXXXXXELGVRLGEEVGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLLFHRPTLNAPGKLDPVEILHS 652
            ++TS P ++     LP+     ++++    N   V++GETGSGK +  +Q L   G +  G IG                  E+G ++G +VGY IRFED T   T IK++TDG L RE L +PE+S  SV++ DEAHER++ TD+L  L+K++A ++    K + TSATL+  K S+   + P +N PGK  PVE+L+S
Sbjct:  470 KRTSLP-ISAQRQTLPVYAMRSELIQAVRDNQFLVIVGETGSGKTTQITQYLDEEGFSNYGMIGCTQPRRVAAVSVAKRVAEEVGCKVGHDVGYTIRFEDVTGPDTRIKYMTDGMLQREALLDPEMSKYSVIMLDEAHERTVATDVLFALLKKAA-IKRPELKVIVTSATLNSAKFSEYFLNCPIINIPGKTFPVEVLYS 667          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: PRP22_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 OS=Schizosaccharomyces pombe GN=prp22 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.602e-33
Identity = 80/187 (42.78%), Postives = 111/187 (59.36%), Query Frame = 2
Query:   95 LPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVTR-SGSIGXXXXXXXXXXXXXXXXXXELGVRLGEEVGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLLFHRPTLNAPGKLDPVEILHS 652
            LP+    ++ +E   +N + V++GETGSGK +  +Q L   G T  S  IG                  E+G R+GEEVGY IRFED+TS  T IK++TDG L RE L +P LS  SV+I DEAHER++ TD+L GL+K +  L+  + K + TSATLD E+ S   +  P    PG+  PVEI+++
Sbjct:  510 LPVFKLRKQFLEAVSKNQILVLLGETGSGKTTQITQYLAEEGYTSDSKMIGCTQPRRVAAMSVAKRVAEEVGCRVGEEVGYTIRFEDKTSRMTQIKYMTDGMLQRECLVDPLLSKYSVIILDEAHERTVATDVLFGLLKGTV-LKRPDLKLIVTSATLDAERFSSYFYKCPIFTIPGRSYPVEIMYT 695          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: DHX16_PANTR (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Pan troglodytes GN=DHX16 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.602e-33
Identity = 81/203 (39.90%), Postives = 112/203 (55.17%), Query Frame = 2
Query:   53 QKTSKPRVNGSMANLPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVTRSG-SIGXXXXXXXXXXXXXXXXXXELGVRLGEEVGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLLFHRPTLNAPGKLDPVEILHSTA 658
            Q   K  +     +LP+    E+++     + V ++ GETGSGK +   Q L   G T  G  I                   E+GV+LG EVGY+IRFED TSERT+++++TDG LLRE LS P+L+  SV++ DEAHER+L+TDIL GL+K  A  R    K L  SAT+D  + S      P    PG+  PV+I ++ A
Sbjct:  388 QAQQKESIQAVRRSLPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIACTQPRRVAAMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLIKDVARFR-PELKVLVASATMDTARFSTFFDDAPVFRIPGRRFPVDIFYTKA 589          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: DHX16_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens GN=DHX16 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 5.602e-33
Identity = 81/203 (39.90%), Postives = 112/203 (55.17%), Query Frame = 2
Query:   53 QKTSKPRVNGSMANLPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVTRSG-SIGXXXXXXXXXXXXXXXXXXELGVRLGEEVGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLLFHRPTLNAPGKLDPVEILHSTA 658
            Q   K  +     +LP+    E+++     + V ++ GETGSGK +   Q L   G T  G  I                   E+GV+LG EVGY+IRFED TSERT+++++TDG LLRE LS P+L+  SV++ DEAHER+L+TDIL GL+K  A  R    K L  SAT+D  + S      P    PG+  PV+I ++ A
Sbjct:  385 QAQQKESIQAVRRSLPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIACTQPRRVAAMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLIKDVARFR-PELKVLVASATMDTARFSTFFDDAPVFRIPGRRFPVDIFYTKA 586          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: DHX15_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15 OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.780e-32
Identity = 77/191 (40.31%), Postives = 112/191 (58.64%), Query Frame = 2
Query:   95 LPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVTRSGS-IGXXXXXXXXXXXXXXXXXXELGVRLGEEVGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLLFHRPTLNAPGKLDPVEILHSTAAS 664
            LP+   +E  ++  ++N V +++GETGSGK +   Q +   G+ R G  +G                  E+   LGEEVGY+IRFE+ +S RT +K+LTDG LLRE +S+P L+   V+I DEAHER+L+TDIL GL+K     R  + K +  SATL+  K  K   + P +  PG+L PVEI ++  A+
Sbjct:   77 LPVWKQKEDFIKVIKENQVVILVGETGSGKTTQIPQFVVDAGLIRPGKMVGVTQPRRVAAISVAKRVSEEMDFELGEEVGYSIRFEELSSARTFMKYLTDGMLLRESMSDPTLNKYDVIILDEAHERTLSTDILFGLIKDILK-RRKDLKLIVMSATLEAGKFQKYFENAPLIKVPGRLHPVEIFYTEEAA 266          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: PRH1_SCHPO (Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces pombe GN=prh1 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 1.093e-28
Identity = 76/201 (37.81%), Postives = 109/201 (54.23%), Query Frame = 2
Query:   92 NLPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVTRSGSIGXXXXXXXXXXXXXXXXXXELGVRLGEEVGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLLFHRPTLNAPGKLDPVEILHSTAASSKLPCVCFAT 694
            NLPI  + + + +  + N V VV+GETGSGK +   Q L+     + G +                   E G RLGE+VGY+IRF+D TS++T IK+LTDG LLRE++++P LS    LI DEAHER+L TD+LLG VK+    R +  + +  SATL+ E+ S+           G+  PV+I ++          C  T
Sbjct:   95 NLPIWEAHDTLCQQIQDNRVIVVVGETGSGKSTQIPQFLNECPYAQEGCVAITQPRRVAAVNLAKRVAAEQGCRLGEQVGYSIRFDDTTSKKTRIKYLTDGMLLRELINDPILSQYHTLILDEAHERTLMTDMLLGFVKKIIKKRPA-LRVIIMSATLNAERFSEFFDGAEICYISGRQYPVQIHYTYTPEPDYLDACLRT 294          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: DHX15_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.428e-28
Identity = 74/193 (38.34%), Postives = 106/193 (54.92%), Query Frame = 2
Query:   92 NLPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVT------RSGSIGXXXXXXXXXXXXXXXXXXELGVRLGEEVGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLLFHRPTLNAPGKLDPVEILHS 652
            +LP+   ++  + T   N   +++GETGSGK +   Q +    V       R   +G                  E+ V +GEEVGY+IRFED TS RT++K+LTDG LLRE +++P L    V+I DEAHER+L TD+L GL+K     R  + K +  SATL+ EK  +     P +  PG+L PVEI ++
Sbjct:   64 DLPVWLQKDDFLNTLNSNQTLILVGETGSGKTTQIPQFVLDAVVADNSDKGRKWLVGCTQPRRVAAMSVSRRVADEMDVSIGEEVGYSIRFEDCTSSRTMLKYLTDGMLLREAMADPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNR-PDLKLVVMSATLEAEKFQEYFSGAPLMKVPGRLHPVEIFYT 255          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: DHX15_SCHPO (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43 OS=Schizosaccharomyces pombe GN=prp43 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.865e-28
Identity = 77/192 (40.10%), Postives = 106/192 (55.21%), Query Frame = 2
Query:   95 LPILHSEEKIVETAEQNPVAVVIGETGSGKIS------LFSQILHRRGVTRSGSIGXXXXXXXXXXXXXXXXXXELGVRLGEEVGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLLFHRPTLNAPGKLDPVEILHS 652
            LP+    E+ ++   +N + V +GETGSGK +      L+ ++ H         I                   E+ V LGEEVGY IRFED +   TL+K++TDG LLRE +++  LS  S +I DEAHER+L TDIL+GL+KR A  R  + K +  SATLD +K  K  F  P L  PG+  PVEI ++
Sbjct:   75 LPVYQQREEFLKIYHENQIIVFVGETGSGKTTQIPQFVLYDELPHLTNT----QIACTQPRRVAAMSVAKRVADEMDVDLGEEVGYNIRFEDCSGPNTLLKYMTDGMLLREAMTDHMLSRYSCIILDEAHERTLATDILMGLMKRLAT-RRPDLKIIVMSATLDAKKFQKYFFDAPLLAVPGRTYPVEIYYT 261          
The following BLAST results are available for this feature:
BLAST of EY753755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
DHX16_CAEEL8.642e-3440.70Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
CDC28_SCHPO9.632e-3441.75Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
PRP22_YEAST1.925e-3338.50Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
PRP22_SCHPO5.602e-3342.78Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX16_PANTR5.602e-3339.90Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX16_HUMAN5.602e-3339.90Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_DICDI2.780e-3240.31Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
PRH1_SCHPO1.093e-2837.81Probable ATP-dependent RNA helicase prh1 OS=Schizo... [more]
DHX15_ARATH1.428e-2838.34Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_SCHPO1.865e-2840.10Probable pre-mRNA-splicing factor ATP-dependent RN... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-006-E08-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753755 ID=EY753755; Name=EY753755; organism=Citrus sinensis; type=EST; length=935bp
TTCCAGGGCTGACCCACGCGTCCGCGCGATTNNGTCCGGGGCCCTNNTCT
GGCAAAAAACCTCCAAACCTCGAGTTAATGGATCGATGGCGAATCTTCCG
ATTCTCCACTCTGAAGAAAAGATAGTTGAAACGGCGGAGCAGAATCCAGT
GGCGGTGGTTATCGGCGAGACGGGGTCCGGCAAGATCTCGTTGTTCTCTC
AGATACTCCACCGACGGGGCGTCACCAGGTCCGGAAGTATCGGCGTTGCT
CAGCCTCGCCGAGTCGCTGCCGCCCCCGTTGCCAGACGAGTTGCACAGGA
ACTTGGTGTTCGGCTTGGGGAGGAAGTGGGCTATGCAATACGATTCGAGG
ATAGAACATCGGAGAGAACACTTATTAAACACCTTACTGATGGAGCTCTT
CTCCGAGAAATCCTGTCTAATCCAGAGCTTAGTCCGTGTTCGGTTCTCAT
ATCAGATGAAGCCCATGAGAGGAGTCTCAACACGGACATATTGCTGGGTC
TTGTGAAACGCTCGGCTAATCTGCGAGCCTCCAACTCAAAGAGTCTGACC
ACGTCAGCAACTCTTGATGGTGAAAAAGCCTCCAAGCTCTTGTTCCATCG
CCCCACGTTGAATGCCCCTGGAAAGCTCGATCCTGTGGAGATTTTGCACA
GCACGGCAGCGTCCTCCAAGCTGCCTTGCGTCTGCTTTGCAACCCGCGCT
CGATATACATGCGCCGCGACCAGCAGGTGACCGTGTCGCTCCCTCTGCCC
GCGCAGGGCGTTCACCAGAAGCCGCGCCCGCGGCTCCACCATCAAACCCC
ACCCGGCNCGCTGGGCCCTGCCTGGATGCCGCCTTCCTCCCCCTCAGGGG
CGCCCGCCCGCCGCGTGCGCGTCCGGTGGTTCTGGTCCCCACCTCCTACG
GGGGCGGATAATGGACACAAAACAACAAAGAAACA
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