EY753755

Overview
NameEY753755
Unique NameEY753755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753755_ssr851 microsatellite EY753755_ssr851:851..862. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: DHR1_YEAST (Probable ATP-dependent RNA helicase DHR1 OS=Saccharomyces cerevisiae GN=ECM16 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.208e-21
Identity = 60/155 (38.71%), Postives = 82/155 (52.90%), Query Frame = 2
Query:   95 LPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVTRS------GSIGXXXXXXXXXXXXXXXXXXELGVRLGEEVGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSK 541
            LP+   E KI+E    N V ++ GETGSGK +   Q L+  G          G +G                  ELG   G +VGY IRF+    E T +K +TDG LLRE++ + +L+  S +I DEAHER++NTDIL+G++ R   LRA   K
Sbjct:  391 LPVFGEEHKIMEAIHHNDVVIICGETGSGKTTQVPQFLYEAGFGAEDSPDYPGMVGITQPRRVAAVSMAERVANELGDH-GHKVGYQIRFDSTAKEDTKVKFMTDGVLLREMMHDFKLTKYSSIIIDEAHERNINTDILIGMLSRCVRLRAKLHK 544          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: DHX35_HUMAN (Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens GN=DHX35 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.919e-21
Identity = 70/197 (35.53%), Postives = 96/197 (48.73%), Query Frame = 2
Query:   95 LPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVTRSGSI-GXXXXXXXXXXXXXXXXXXELGVRLGEEVGYAIRFEDRTSE-RTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLLFHRPT----------LNAPGKLDPVEILH 649
            LP+      I+   E     V++GETG GK +   Q L   G T  G + G                  E G  LG EVGY IRF+D T +  T IK LTDG L+RE++ +P L+  SV++ DEAHER+L TDI +GL+K+    R  + + +  SATLD +K         T          L   G+  PV+I +
Sbjct:   54 LPVFKLRNHILYLIENYQTVVIVGETGCGKSTQIPQYLAEAGWTAEGRVVGVTQPRRVAAVTVAGRVAEERGAVLGHEVGYCIRFDDCTDQLATRIKFLTDGMLVREMMVDPLLTKYSVIMLDEAHERTLYTDIAIGLLKKIQKKR-GDLRLIVASATLDADKFRDFFNQNETSDPARDTCVILTVEGRTFPVDIFY 249          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: DHX35_PONAB (Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.424e-21
Identity = 70/197 (35.53%), Postives = 96/197 (48.73%), Query Frame = 2
Query:   95 LPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVTRSGSI-GXXXXXXXXXXXXXXXXXXELGVRLGEEVGYAIRFEDRTSE-RTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLLFHRPT----------LNAPGKLDPVEILH 649
            LP+      I+   E     V++GETG GK +   Q L   G T  G + G                  E G  LG EVGY IRF+D T +  T IK LTDG L+RE++ +P L+  SV++ DEAHER+L TDI +GL+K+    R  + + +  SATLD +K         T          L   G+  PV+I +
Sbjct:   54 LPVFKLRNHILYLIENYQTVVIVGETGCGKSTQIPQYLAEAGWTAEGRVVGVTQPRRVAAVTVAGRVAEERGAVLGHEVGYCIRFDDCTDQLATRIKFLTDGMLVREMMVDPLLTKYSVIMLDEAHERTLYTDIAIGLLKKIQKKR-GDLRLIVASATLDADKFRDFFNQNETSDPARDTCVILTVGGRTFPVDIFY 249          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: RHA2_CAEEL (Putative ATP-dependent RNA helicase rha-2 OS=Caenorhabditis elegans GN=rha-2 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 9.277e-20
Identity = 63/169 (37.28%), Postives = 88/169 (52.07%), Query Frame = 2
Query:   74 VNGSMANLPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVTRSGSIGXXXXXXXXXXXXXXXXXXELGVRLG--EEVGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSL---TTSATL 565
            +  S A LPI   E +IVE   +N V VV GETGSGK +   Q L+  G    G +                    +GV L   +EV Y IR+E   SE T I  +TDG L++E+  +  L   SV++ DEAHERS+ +D+L+G++ R   LR+  ++ L     SATL
Sbjct:  229 IQKSRAELPIFAEEMRIVEAINENLVTVVCGETGSGKTTQIPQFLYEAGYASEGEL---IGITEPRRVAAIAMAQRVGVELAKPDEVSYQIRYEGTRSETTNILFMTDGVLMKEMEQDVMLKKYSVILIDEAHERSMYSDVLIGMLSRIVPLRSKTARPLRLVIMSATL 394          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: YK16_SCHPO (Putative ATP-dependent RNA helicase PB1A10.06c OS=Schizosaccharomyces pombe GN=SPAPB1A10.06c PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.067e-19
Identity = 72/195 (36.92%), Postives = 93/195 (47.69%), Query Frame = 2
Query:   68 PRVNGSMANLPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVT-----RSGSIGXXXXXXXXXXXXXXXXXXELGVRLGEEVGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKS---------LTTSATL--DGEKASKLLFHRP 604
            P +  S   LPI+  E++I+E    N V ++ G TGSGK +   Q L   G +       G I                   EL      +V Y IRF+   +  T IK +TDG LLRE+ S+  L+  S +I DEAHERS+NTDILLGL+ R   LR   SKS         +  SATL       +KLLF  P
Sbjct:  389 PEIQESRLALPIVAEEQRIMEQIFANDVVIICGATGSGKTTQLPQFLFEAGFSSPESENPGMIAITQPRRVAAVSIAKRVSEEL-TGFSSKVSYQIRFDSTINPDTAIKFMTDGILLRELSSDFLLTAYSAVIVDEAHERSVNTDILLGLLSRIVRLRREMSKSDQKVKPLKLIIMSATLRVTDFSENKLLFSVP 582          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: DHX34_MOUSE (Probable ATP-dependent RNA helicase DHX34 OS=Mus musculus GN=Dhx34 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 6.013e-19
Identity = 64/187 (34.22%), Postives = 91/187 (48.66%), Query Frame = 2
Query:   89 ANLPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVTRSGSIGXXXXXXXXXXXXXXXXXXELGVRLGEEVGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLLFHRPTLNAPGKLDPVEILH 649
            A LPI     +I++T +++ V VV G+TG GK +   Q L   G +    +                   E   + G +VGY IRFE   S  T I  LT G LLR+I   P L    VLI DE HER L+ D LLG+++R    R  + K +  SAT++    S    H P +  PG+L P+ +++
Sbjct:  162 AALPIAQYGNRILQTLKEHQVVVVAGDTGCGKSTQVPQYLLAAGFSH---VACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATKIVFLTVGLLLRQIQREPSLPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQR-PDLKVILMSATINISLFSSYFSHAPVVQVPGRLFPITVVY 344          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: DHX34_HUMAN (Probable ATP-dependent RNA helicase DHX34 OS=Homo sapiens GN=DHX34 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.648e-18
Identity = 63/185 (34.05%), Postives = 89/185 (48.11%), Query Frame = 2
Query:   89 ANLPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVTRSGSIGXXXXXXXXXXXXXXXXXXELGVRLGEEVGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLLFHRPTLNAPGKLDPVEI 643
            A LPI     +I++T +++ V VV G+TG GK +   Q L   G +    +                   E   + G +VGY IRFE   S  T I  LT G LLR+I   P L    VLI DE HER L+ D LLG+++R    R  + K +  SAT++    S    + P +  PG+L P+ +
Sbjct:  160 AALPIAQYGNRILQTLKEHQVVVVAGDTGCGKSTQVPQYLLAAGFSH---VACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATKIVFLTVGLLLRQIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTR-PDLKVILMSATINISLFSSYFSNAPVVQVPGRLFPITV 340          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: DHX29_MOUSE (ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.648e-18
Identity = 67/195 (34.36%), Postives = 92/195 (47.18%), Query Frame = 2
Query:   95 LPILHSEEKIVETAEQNPVAVVIGETGSGKIS-----LFSQILHRRGVTRSGSIGXXXXXXXXXXXXXXXXXXELGVRLGEE-----VGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLLFHRPTLNAPGKLDPVEILH 649
            LP+    + IVET +++ V VV GETGSGK +     L   +L      R  +I                   ELG   G        GY IR E R SE T + + T G LLR++  +  L+  S +I DE HERS+ +D LL ++K     R S+   +  SAT+D +K S    H P L   G+  PVE+ H
Sbjct:  571 LPVFKHRDSIVETLKRHRVVVVAGETGSGKSTQVPHFLLEDLLLDECGARKCNIVCTQPRRISAVSLATRVCEELGCESGPGGRNSLCGYQIRMESRASESTRLLYCTTGVLLRKLQEDGLLADVSHVIVDEVHERSVQSDFLLVILKEILQKR-SDLHLILMSATVDSDKFSTYFTHCPILRISGRSYPVEVFH 764          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: DHX29_HUMAN (ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.481e-17
Identity = 71/210 (33.81%), Postives = 95/210 (45.24%), Query Frame = 2
Query:   50 WQKTSKPRVNGSMANLPILHSEEKIVETAEQNPVAVVIGETGSGKIS-----LFSQILHRRGVTRSGSIGXXXXXXXXXXXXXXXXXXELGVRLGEE-----VGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLLFHRPTLNAPGKLDPVEILH 649
            +QK  K R       LP+    + IVET +++ V VV GETGSGK +     L   +L         +I                   ELG   G        GY IR E R  E T + + T G LLR++  +  LS  S +I DE HERS+ +D LL ++K     R S+   +  SAT+D EK S    H P L   G+  PVE+ H
Sbjct:  562 YQKLLKER-----QQLPVFKHRDSIVETLKRHRVVVVAGETGSGKSTQVPHFLLEDLLLNEWEASKCNIVCTQPRRISAVSLANRVCDELGCENGPGGRNSLCGYQIRMESRACESTRLLYCTTGVLLRKLQEDGLLSNVSHVIVDEVHERSVQSDFLLIILKEILQKR-SDLHLILMSATVDSEKFSTYFTHCPILRISGRSYPVEVFH 765          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: DHX29_XENLA (ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.254e-16
Identity = 66/206 (32.04%), Postives = 94/206 (45.63%), Query Frame = 2
Query:   71 RVNGSMANLPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVTRSGSIGXXXXXXXXXXXXXXXXXXELGVRLGEEVG-------------YAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLLFHRPTLNAPGKLDPVEILH 649
            R+      LP+      I+ET +++ V VV GETGSGK +   Q L    +   GS G                   L  R+ EE+G             Y IR E RT E T + + T G LLR++  +  L   S +I DE HER++ +D LL ++ R    + S+   +  SAT+D EK S    H P +   G+  PVE+ H
Sbjct:  558 RLLNDREQLPVFARGNFILETLKRHRVIVVAGETGSGKSTQVPQFLLEDLLFNGGSPGKCNIVCTQPRRISAM---SLATRVCEELGCDSGPGGKNSLCGYQIRMESRTGEATRLLYCTTGILLRKLQEDSMLKNISHIIVDEVHERTVQSDFLL-IILREILHKRSDLHLVLMSATVDCEKFSSYFTHCPIIRISGRTFPVEVFH 759          
The following BLAST results are available for this feature:
BLAST of EY753755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
DHR1_YEAST2.208e-2138.71Probable ATP-dependent RNA helicase DHR1 OS=Saccha... [more]
DHX35_HUMAN4.919e-2135.53Probable ATP-dependent RNA helicase DHX35 OS=Homo ... [more]
DHX35_PONAB6.424e-2135.53Probable ATP-dependent RNA helicase DHX35 OS=Pongo... [more]
RHA2_CAEEL9.277e-2037.28Putative ATP-dependent RNA helicase rha-2 OS=Caeno... [more]
YK16_SCHPO2.067e-1936.92Putative ATP-dependent RNA helicase PB1A10.06c OS=... [more]
DHX34_MOUSE6.013e-1934.22Probable ATP-dependent RNA helicase DHX34 OS=Mus m... [more]
DHX34_HUMAN6.648e-1834.05Probable ATP-dependent RNA helicase DHX34 OS=Homo ... [more]
DHX29_MOUSE6.648e-1834.36ATP-dependent RNA helicase Dhx29 OS=Mus musculus G... [more]
DHX29_HUMAN1.481e-1733.81ATP-dependent RNA helicase DHX29 OS=Homo sapiens G... [more]
DHX29_XENLA1.254e-1632.04ATP-dependent RNA helicase DHX29 OS=Xenopus laevis... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-006-E08-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753755 ID=EY753755; Name=EY753755; organism=Citrus sinensis; type=EST; length=935bp
TTCCAGGGCTGACCCACGCGTCCGCGCGATTNNGTCCGGGGCCCTNNTCT
GGCAAAAAACCTCCAAACCTCGAGTTAATGGATCGATGGCGAATCTTCCG
ATTCTCCACTCTGAAGAAAAGATAGTTGAAACGGCGGAGCAGAATCCAGT
GGCGGTGGTTATCGGCGAGACGGGGTCCGGCAAGATCTCGTTGTTCTCTC
AGATACTCCACCGACGGGGCGTCACCAGGTCCGGAAGTATCGGCGTTGCT
CAGCCTCGCCGAGTCGCTGCCGCCCCCGTTGCCAGACGAGTTGCACAGGA
ACTTGGTGTTCGGCTTGGGGAGGAAGTGGGCTATGCAATACGATTCGAGG
ATAGAACATCGGAGAGAACACTTATTAAACACCTTACTGATGGAGCTCTT
CTCCGAGAAATCCTGTCTAATCCAGAGCTTAGTCCGTGTTCGGTTCTCAT
ATCAGATGAAGCCCATGAGAGGAGTCTCAACACGGACATATTGCTGGGTC
TTGTGAAACGCTCGGCTAATCTGCGAGCCTCCAACTCAAAGAGTCTGACC
ACGTCAGCAACTCTTGATGGTGAAAAAGCCTCCAAGCTCTTGTTCCATCG
CCCCACGTTGAATGCCCCTGGAAAGCTCGATCCTGTGGAGATTTTGCACA
GCACGGCAGCGTCCTCCAAGCTGCCTTGCGTCTGCTTTGCAACCCGCGCT
CGATATACATGCGCCGCGACCAGCAGGTGACCGTGTCGCTCCCTCTGCCC
GCGCAGGGCGTTCACCAGAAGCCGCGCCCGCGGCTCCACCATCAAACCCC
ACCCGGCNCGCTGGGCCCTGCCTGGATGCCGCCTTCCTCCCCCTCAGGGG
CGCCCGCCCGCCGCGTGCGCGTCCGGTGGTTCTGGTCCCCACCTCCTACG
GGGGCGGATAATGGACACAAAACAACAAAGAAACA
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