EY753716

Overview
NameEY753716
Unique NameEY753716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753716_ssr380 microsatellite EY753716_ssr380:380..391. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY753716 vs. ExPASy Swiss-Prot
Match: IF5A2_CAEEL (Eukaryotic translation initiation factor 5A-2 OS=Caenorhabditis elegans GN=iff-2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.362e-25
Identity = 55/86 (63.95%), Postives = 67/86 (77.91%), Query Frame = 2
Query:   80 MSDEEH---HFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDV 328
            MSD+ H   HF +  D+GA+ TFP+Q   +RKN +++IKGRPCK+VE+STSKTGKHGHAK H V IDIF  KKLEDI PS+HN DV
Sbjct:    1 MSDDHHDDEHFHT-GDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTSKKLEDICPSTHNMDV 85          
BLAST of EY753716 vs. ExPASy Swiss-Prot
Match: IF5A1_CAEEL (Eukaryotic translation initiation factor 5A-1 OS=Caenorhabditis elegans GN=iff-1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.531e-24
Identity = 52/83 (62.65%), Postives = 66/83 (79.52%), Query Frame = 2
Query:   89 EEHHFESK---ADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDV 328
            E+HH E +   A++GA+ TFP+Q   +RKN +++I+GRPCK+VE+STSKTGKHGHAK H V IDIF  KKLEDI PS+HN DV
Sbjct:    3 EDHHDEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTTKKLEDICPSTHNMDV 85          
BLAST of EY753716 vs. ExPASy Swiss-Prot
Match: IF5A_DICDI (Eukaryotic translation initiation factor 5A OS=Dictyostelium discoideum GN=eif5a PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 7.110e-22
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 2
Query:  107 SKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDV 328
            ++A +GAS TFP Q   +RKNG++VIKG PCK+V++STSKTGKHGHAK +   IDIF GKK E+I PS+HN DV
Sbjct:   13 AQAGSGASLTFPIQCSALRKNGFVVIKGFPCKIVDMSTSKTGKHGHAKVNITAIDIFTGKKYEEICPSTHNIDV 86          
BLAST of EY753716 vs. ExPASy Swiss-Prot
Match: IF5A_SCHMA (Eukaryotic translation initiation factor 5A (Fragment) OS=Schistosoma mansoni PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.537e-13
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:  116 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVG 265
            D GASKT P+Q   +RK G++V+K RPCK+VE+STSKTGKHG AK H VG
Sbjct:    3 DFGASKTLPKQCSALRKGGHVVMKDRPCKIVEMSTSKTGKHGSAKVHLVG 52          
BLAST of EY753716 vs. ExPASy Swiss-Prot
Match: IF5A_THEPD (Translation initiation factor 5A OS=Thermofilum pendens (strain Hrk 5) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.994e-12
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 2
Query:  134 TFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVLIYASLSA 352
            T P++AG I+   +IVI G PCKVVEV  SKTGKHG AK   VGI  F+G K   +VP+    +V I    +A
Sbjct:    3 TRPEEAGNIKVGSFIVIDGEPCKVVEVEKSKTGKHGSAKARIVGIGFFDGGKRSIVVPTDARVEVPIIKKFTA 75          
The following BLAST results are available for this feature:
BLAST of EY753716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
IF5A2_CAEEL2.362e-2563.95Eukaryotic translation initiation factor 5A-2 OS=C... [more]
IF5A1_CAEEL1.531e-2462.65Eukaryotic translation initiation factor 5A-1 OS=C... [more]
IF5A_DICDI7.110e-2263.51Eukaryotic translation initiation factor 5A OS=Dic... [more]
IF5A_SCHMA3.537e-1366.00Eukaryotic translation initiation factor 5A (Fragm... [more]
IF5A_THEPD2.994e-1249.32Translation initiation factor 5A OS=Thermofilum pe... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-006-A11-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753716 ID=EY753716; Name=EY753716; organism=Citrus sinensis; type=EST; length=893bp
CCACGCGTCCGGGTATAGTTCGATTCTACCAAAATTTGGTTGTCGAAGCT
CTAATTGTGAATCGCAGGAACCAGACGATATGTCGGACGAAGAGCACCAC
TTTGAGTCGAAGGCCGACGCCGGCGCCTCCAAGACATTTCCTCAGCAGGC
CGGAACCATCCGCAAAAACGGTTATATCGTCATCAAAGGTCGTCCTTGCA
AGGTTGTTGAGGTTTCAACTTCCAAGACTGGAAAGCACGGTCATGCTAAG
TGTCACTTTGTAGGAATTGACATCTTCAATGGCAAGAAGCTTGAGGATAT
TGTTCCCTCTTCCCACAACTGTGATGTATTGATTTATGCTTCTTTGAGTG
CATTTAACTTTATAATTTTTTACTTCTTTTAAATAAATAAAAAAATTCGC
GTGAGGTTAATGTGTTTTATTTCACTTTATAGGTTCCTCATGTCACTCGC
ACTGACTACCAGCTGATTGATATCTCTGAGGATGGATTTGTATGTTCTTA
CTTTGTTTTGTCATGTTCATTTTACTTGTCTTTTTTGCTGTAAATGCGAT
TAGTTAATTTCTGTTACTCTAATAAATTGCAGGTTAGCCTGCTGACTGAG
AATGGGCATACCAAGGATGACCTGAGACTTCCAACTGATGAAAATCTGCT
TTCCAGGTTAGTTGACTGATTTCCATTTTTACAAGGGACCCCATGTTGCA
GTGTGTTATAATTTTANTGTCGTTATGGTTTGGAGGTATGAAAAAAAAAT
GGGATGCTGGGTTCTATTACTGNNCCATCTGTCAAATTAAAGGTGAATCT
TGTTTGATCATAATGGCAACTAACAAAATTTTCATGGTTGAATTTGAAGT
TTAAAACCTGGGATCGNCGGTTTTGATTTTGCCATTGAACTTT
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